genome.fa.s5851.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005851.1 Hibiscus syriacus cultivar Beakdansim tig00013734_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  112027

Tables:   1   

This is table  1  of  1  ( 96 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12094--12158	10	6.3	10	81	13	78	80	0	20	0	0.72
12099--12158	14	4.3	14	81	8	77	80	0	20	0	0.72
12111--12159	15	3.0	17	72	22	59	77	0	22	0	0.77
12098--12159	32	1.9	32	93	6	108	79	0	20	0	0.74
12486--12530	18	2.6	18	89	6	67	31	6	6	55	1.52
13421--13662	50	4.8	50	99	0	475	25	13	21	38	1.91
13271--13511	133	1.8	133	98	0	464	29	14	20	36	1.92
14225--14646	113	3.7	113	94	3	708	39	12	20	28	1.89
14900--14978	3	26.7	3	87	2	115	34	3	0	62	1.14
16526--16578	17	3.1	18	72	10	56	54	0	5	39	1.24
25739--26633	6	153.5	6	93	5	1563	50	16	0	33	1.46
28328--28417	35	2.5	35	87	1	135	28	21	15	34	1.94
30779--30834	19	2.9	19	82	12	62	21	26	21	30	1.98
30802--30855	19	2.9	18	78	8	54	22	27	18	31	1.97
32185--32227	21	2.0	21	81	0	50	27	30	25	16	1.97
32255--32292	20	1.9	20	88	0	58	23	34	31	10	1.89
33149--33181	4	8.2	4	93	0	57	30	0	21	48	1.50
33356--33429	31	2.4	31	84	4	87	28	16	18	36	1.93
33367--33448	31	2.6	31	78	0	92	28	15	23	32	1.95
33434--33566	30	4.4	30	97	0	239	24	20	23	31	1.98
49442--49519	35	2.2	34	82	11	86	48	3	0	47	1.20
49508--49555	20	2.5	19	83	6	60	45	2	4	47	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49697--49810	29	3.9	29	94	0	183	17	33	27	21	1.96
49862--49933	33	2.2	33	89	0	108	13	36	25	25	1.93
49862--50006	10	13.1	10	68	18	65	12	33	30	23	1.92
49937--49986	20	2.5	20	100	0	100	10	30	36	24	1.88
49973--50000	14	2.0	14	100	0	56	7	28	42	21	1.79
51835--51864	15	2.0	15	100	0	60	26	6	20	46	1.75
53577--53704	60	2.1	60	77	8	136	36	13	11	38	1.81
57678--57716	18	2.2	18	86	4	53	53	0	0	46	1.00
58231--58583	137	2.6	135	79	8	365	46	12	12	29	1.78
58231--58510	136	2.0	137	82	6	334	46	13	12	28	1.79
60107--60151	23	2.0	23	90	0	72	24	26	26	22	2.00
60127--60433	149	2.1	149	93	1	526	35	21	16	27	1.94
61063--61105	2	21.5	2	100	0	86	48	0	0	51	1.00
61872--62032	64	2.5	63	85	8	200	26	21	18	33	1.96
65353--65397	23	2.0	23	90	0	72	24	26	26	22	2.00
66278--66321	2	22.0	2	100	0	88	50	0	0	50	1.00
66972--67132	64	2.5	63	85	8	200	26	21	18	33	1.96
70852--71025	30	5.5	30	79	14	181	46	0	3	49	1.23
70852--71000	45	3.2	45	86	7	192	47	0	2	49	1.17
70852--70999	15	9.5	15	82	10	172	47	0	2	50	1.17
71002--71044	22	2.0	22	95	0	77	37	0	11	51	1.39
70979--71108	32	4.4	32	80	18	181	36	0	10	53	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70897--71054	69	2.3	67	85	8	205	43	0	5	50	1.30
70979--71830	54	16.1	54	72	17	541	33	0	13	52	1.42
70979--71444	86	5.7	82	72	15	344	34	0	12	52	1.43
71197--71293	31	3.4	29	70	24	91	36	1	13	49	1.49
71056--71590	185	2.8	186	86	6	695	33	0	13	52	1.43
71326--71427	32	3.5	31	71	25	105	38	0	7	52	1.37
71405--71615	22	9.0	22	72	19	153	32	0	13	53	1.40
71468--71568	40	2.9	32	83	16	123	29	0	14	55	1.40
71468--71564	18	5.4	18	72	20	96	27	0	15	56	1.39
71429--71665	119	2.0	119	94	1	413	31	0	14	54	1.40
71627--71669	22	2.0	22	100	0	86	34	0	13	51	1.42
71649--71893	32	6.6	33	72	27	176	32	0	15	52	1.43
71784--71831	22	2.4	18	73	23	51	33	0	14	52	1.42
71539--71910	80	4.6	80	90	8	572	32	0	14	52	1.45
71939--71998	31	1.9	31	93	0	102	43	10	6	40	1.64
72993--73049	29	1.9	30	89	3	89	43	35	3	17	1.66
72981--73074	30	3.1	30	83	4	109	36	38	5	20	1.75
75621--75720	46	2.2	46	82	7	114	29	20	15	36	1.92
80389--80434	21	2.2	21	100	0	92	8	17	32	41	1.80
81521--81620	44	2.3	44	87	0	137	31	20	20	29	1.97
82032--82068	18	2.1	18	90	5	58	18	0	13	67	1.23
83454--83540	36	2.3	38	90	3	133	21	0	21	56	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83485--83539	25	2.1	26	80	12	60	18	0	21	60	1.37
84249--84300	19	2.7	19	93	0	86	30	28	21	19	1.97
84186--84346	84	1.9	83	87	3	234	27	24	18	29	1.98
84184--84365	84	2.2	83	82	10	228	26	24	18	29	1.98
88574--88634	29	2.1	30	90	9	99	62	4	0	32	1.17
88566--88644	28	2.9	25	77	15	77	65	3	1	29	1.17
97628--97668	2	20.5	2	100	0	82	51	0	0	48	1.00
103624--103672	11	4.6	11	73	19	50	22	8	0	69	1.14
103665--103707	19	2.3	18	80	11	50	39	2	0	58	1.11
103714--103775	29	2.1	29	81	0	70	59	8	0	32	1.26
103730--103825	31	3.2	29	78	7	102	66	2	1	30	1.10
103793--103859	29	2.3	29	82	5	73	59	0	5	34	1.22
103730--103952	30	7.7	29	73	10	136	56	1	5	36	1.30
104376--104409	13	2.4	14	90	9	52	47	2	5	44	1.42
105399--105491	21	4.5	21	78	4	100	39	18	24	17	1.91
105416--105496	21	3.9	21	80	4	101	39	17	24	18	1.92
105480--105614	20	6.7	19	76	12	74	32	23	17	25	1.97
105399--105491	41	2.3	41	100	0	186	39	18	24	17	1.91
105477--105614	41	3.4	41	75	11	131	34	23	17	25	1.96
105782--105825	22	2.0	22	90	0	70	20	43	15	20	1.88
106089--106135	20	2.3	20	81	0	58	19	19	25	36	1.95
107463--107507	18	2.5	18	88	0	72	26	44	15	13	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107988--108054	20	3.4	20	81	2	73	38	23	22	14	1.92
108043--108100	14	3.9	14	79	16	71	48	25	17	8	1.75
108027--108117	32	2.8	33	94	3	166	47	23	18	10	1.80
107988--108122	19	7.6	19	71	19	85	42	23	20	12	1.86
108134--108191	14	3.9	14	79	16	71	8	17	25	48	1.75
108129--108207	32	2.4	33	95	2	142	10	18	24	46	1.80
108192--108247	20	2.8	19	86	7	76	16	25	23	35	1.94
110802--110855	24	2.2	24	90	0	81	24	16	20	38	1.92

Tables:   1

The End!