Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005852.1 Hibiscus syriacus cultivar Beakdansim tig00013735_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80427

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
837--890
20
2.7
20
91
5
83
33
14
22
29
1.94
1432--1468
18
2.1
18
85
14
51
51
5
10
32
1.60
1845--1881
18
2.1
18
85
14
51
51
5
10
32
1.60
1198--2857
409
4.0
413
94
3
2887
45
14
12
28
1.80
2254--2290
18
2.1
18
85
14
51
51
5
10
32
1.60
4173--4205
12
2.6
13
90
4
50
45
6
12
36
1.66
4665--4741
23
3.6
21
80
14
86
31
16
19
32
1.94
20390--20462
32
2.3
32
97
0
137
42
26
13
17
1.87
25295--25322
2
14.0
2
100
0
56
50
0
0
50
1.00
26135--26177
23
1.9
23
85
4
61
37
6
32
23
1.82
26742--27142
101
3.9
98
73
10
275
33
16
10
38
1.83
27042--27312
67
4.1
66
87
2
384
31
15
12
40
1.84
27312--27723
137
3.0
137
86
0
574
26
28
16
27
1.97
27909--27952
3
14.7
3
95
0
79
34
2
0
63
1.07
28519--28556
19
2.1
19
90
9
62
36
13
34
15
1.87
29593--29622
16
1.9
16
93
6
53
13
23
10
53
1.69
34152--34225
30
2.5
31
72
12
82
37
8
10
43
1.69
34311--34374
28
2.3
26
79
10
65
37
7
7
46
1.62
34950--35099
41
3.6
41
65
16
112
30
19
21
28
1.97
34878--35080
83
2.5
83
85
4
252
31
18
20
30
1.96
34946--35215
124
2.2
123
83
2
342
31
18
20
29
1.96
34990--35248
124
2.1
121
78
6
284
31
18
18
31
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35226--35316
42
2.1
42
84
6
112
30
13
17
38
1.88
35726--35849
61
2.0
61
100
0
248
23
32
7
37
1.82
37395--37423
11
2.5
12
94
5
51
0
13
0
86
0.58
60197--60241
21
2.1
21
91
0
72
33
24
15
26
1.95
61878--61917
20
2.0
21
95
5
73
32
22
20
25
1.98
67708--67742
2
17.5
2
100
0
70
51
0
0
48
1.00
68374--68431
3
20.0
3
78
7
66
37
3
0
58
1.15
68374--68430
17
3.3
17
80
11
62
38
3
0
57
1.16
68374--68431
20
2.9
20
86
0
80
37
3
0
58
1.15
68533--68580
16
3.0
16
96
0
87
25
43
16
14
1.86
69230--69276
20
2.3
20
81
0
58
27
12
36
23
1.91
75791--75988
5
37.8
5
73
17
120
76
0
22
0
0.82
75786--75989
16
12.6
16
72
22
119
76
0
22
0
0.81
75822--75864
1
43.0
1
85
0
59
93
0
6
0
0.37
75787--75860
26
3.0
24
80
9
85
82
0
17
0
0.67
75788--75990
19
10.8
18
77
11
110
77
0
22
0
0.81
75786--75969
33
6.2
28
77
16
96
77
0
21
0
0.80
75830--75989
7
24.6
7
80
16
150
76
0
22
0
0.82
77219--77400
51
3.6
51
87
1
240
34
16
24
24
1.95
77896--78001
54
2.0
54
94
0
185
36
11
25
26
1.90
79020--80424
177
7.9
177
90
1
2219
32
17
20
29
1.96

Tables:   1

The End!