genome.fa.s5854.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005854.1 Hibiscus syriacus cultivar Beakdansim tig00013747_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67618

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1463--1498	15	2.4	15	85	0	54	33	33	5	27	1.80
4320--4350	3	10.3	3	100	0	62	67	0	0	32	0.91
6991--7040	14	3.6	14	86	5	66	26	24	20	30	1.98
9975--10030	27	2.1	27	93	0	94	44	21	12	21	1.85
10686--10722	18	2.0	19	94	5	67	35	21	0	43	1.53
12837--13180	54	6.3	54	86	2	460	32	13	17	36	1.89
12837--13216	108	3.5	108	89	2	530	32	13	17	36	1.89
16666--16970	60	5.1	60	82	4	328	30	21	12	35	1.90
16666--16970	120	2.5	120	84	4	373	30	21	12	35	1.90
17380--17441	22	2.8	22	92	0	97	27	17	16	38	1.91
17483--17530	20	2.5	19	86	6	62	31	29	12	27	1.93
21972--22406	54	8.0	55	86	4	589	32	12	17	37	1.88
21991--22418	108	3.9	108	91	1	660	32	13	17	36	1.89
24314--24354	15	2.7	15	96	0	73	24	41	0	34	1.55
25511--25621	49	2.3	48	85	10	147	62	14	6	17	1.52
25536--25640	49	2.2	48	88	8	151	56	19	7	17	1.64
25735--25772	16	2.4	16	90	0	58	57	7	5	28	1.49
29343--29477	30	4.6	28	66	22	71	62	3	2	31	1.25
29423--29465	18	2.5	17	81	7	52	67	2	2	27	1.15
29878--29946	34	2.0	34	94	0	120	31	14	11	42	1.82
30495--31220	105	7.0	105	90	2	1061	23	17	25	33	1.96
31863--32255	65	5.8	65	72	12	213	38	11	20	29	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31995--32275	36	8.0	35	77	12	263	39	14	20	25	1.90
31943--32256	138	2.3	137	84	1	414	39	13	20	27	1.90
32137--32309	36	4.8	36	85	4	172	39	16	20	23	1.91
33205--33253	22	2.2	22	92	0	80	28	14	24	32	1.94
33217--33260	22	2.0	22	86	0	61	31	13	22	31	1.93
33909--33978	8	9.1	7	77	20	61	0	15	7	77	0.98
33903--33957	16	3.4	17	78	7	53	0	16	9	74	1.06
33934--33984	15	3.2	16	79	17	54	0	13	7	78	0.96
35083--35122	8	5.0	8	84	0	53	60	10	15	15	1.60
37660--37697	2	19.0	2	94	0	67	52	0	0	47	1.00
38206--38248	18	2.5	17	85	7	61	67	2	4	25	1.22
38659--38727	34	2.0	34	94	0	120	31	14	11	42	1.82
41395--41457	3	21.0	3	80	6	74	34	0	1	63	1.04
42858--42888	16	1.9	16	93	0	53	38	3	3	54	1.32
45349--45377	13	2.3	13	94	5	51	24	13	6	55	1.63
48514--48543	13	2.2	14	94	5	53	53	40	0	6	1.27
53604--53644	21	2.0	21	90	4	66	39	17	31	12	1.86
55043--55085	17	2.6	16	78	10	50	60	4	9	25	1.47
60652--60687	18	2.0	18	94	0	63	44	25	11	19	1.83
63976--64070	50	1.9	49	80	4	111	18	20	25	35	1.95

Tables:   1

The End!