Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005855.1 Hibiscus syriacus cultivar Beakdansim tig00013750_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71945

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3427--3472
21
2.2
21
88
7
67
26
10
6
56
1.58
3947--3971
13
1.9
13
100
0
50
48
0
8
44
1.32
5523--5628
51
2.1
51
96
0
194
36
18
22
21
1.95
6563--6723
65
2.5
64
89
4
261
28
17
22
31
1.97
6564--6765
65
3.1
64
83
10
243
27
17
23
31
1.97
9514--9654
64
2.2
63
82
5
167
34
17
21
26
1.95
9642--9699
20
2.6
22
86
10
75
29
22
22
25
1.99
10594--10639
19
2.4
19
85
0
56
39
0
19
41
1.52
10949--11020
30
2.4
30
85
2
90
20
19
25
34
1.96
11515--11555
2
20.5
2
100
0
82
0
0
48
51
1.00
18438--18465
14
2.0
14
100
0
56
21
14
14
50
1.78
18495--18599
45
2.3
46
90
1
158
32
17
20
30
1.95
20453--20535
2
41.5
2
100
0
166
50
0
0
49
1.00
21333--21417
38
2.3
37
82
9
95
12
12
35
38
1.82
21158--21617
256
1.8
250
90
3
751
25
12
25
37
1.91
22141--22173
17
1.9
17
88
11
50
30
0
0
69
0.88
22346--22392
18
2.7
18
87
6
71
29
29
6
34
1.82
24001--24040
19
2.0
20
85
4
55
32
0
2
65
1.06
24020--24055
17
2.1
17
89
0
54
47
0
0
52
1.00
31834--31918
41
2.1
41
100
0
170
44
23
8
23
1.80
32371--32395
3
8.3
3
100
0
50
32
0
0
68
0.90
41654--41698
21
2.1
21
87
0
63
28
28
24
17
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41894--41948
13
4.2
13
75
13
58
49
12
3
34
1.59
41934--42032
33
3.0
33
91
1
155
45
14
7
33
1.71
42027--42068
21
2.0
21
95
0
75
47
7
14
30
1.71
44276--44319
12
3.5
12
79
11
52
15
20
15
47
1.82
44404--44462
29
2.1
29
84
9
77
23
16
11
47
1.80
51563--51646
32
2.7
31
73
14
82
27
33
22
16
1.96
51791--51882
12
7.7
12
71
4
78
54
15
15
15
1.72
56832--57054
43
5.1
44
75
8
161
52
5
14
26
1.64
56846--57054
44
4.8
45
75
10
166
54
5
14
26
1.61
61448--61497
24
2.1
23
82
10
57
24
0
60
16
1.36
61456--61505
24
2.1
24
85
14
68
22
2
60
16
1.46
61475--61547
33
2.2
33
80
4
85
16
8
58
16
1.60
63222--64764
777
2.0
761
83
7
1911
28
17
20
32
1.96
68145--68176
2
17.0
2
87
12
50
53
0
0
46
1.00

Tables:   1

The End!