Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01005857.1 Hibiscus syriacus cultivar Beakdansim tig00013755_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 51475
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.35
Found at i:841 original size:2 final size:2
Alignment explanation
Indices: 834--872 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
824 TCAAGTTTTC
834 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
873 CATAATTTTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:1693 original size:3 final size:3
Alignment explanation
Indices: 1685--1709 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
1675 CCCATTCCCA
1685 TTC TTC TTC TTC TTC TTC TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC T
1710 ATTCATTCCC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:3787 original size:33 final size:34
Alignment explanation
Indices: 3723--3787 Score: 89
Period size: 33 Copynumber: 1.9 Consensus size: 34
3713 TGAATTATAT
*
3723 TTATTTTATTTTTTATTATGTTTTCATAATTTAA
1 TTATTTTATTTTTTATTATGTTTTCAAAATTTAA
*
3757 TTATTTTGTTTGTTTATT-T-TTTTCAAAATTT
1 TTATTTTATTT-TTTATTATGTTTTCAAAATTT
3788 TGATGCCAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
33 11 0.39
34 11 0.39
35 6 0.21
ACGTcount: A:0.23, C:0.03, G:0.05, T:0.69
Consensus pattern (34 bp):
TTATTTTATTTTTTATTATGTTTTCAAAATTTAA
Found at i:5314 original size:23 final size:23
Alignment explanation
Indices: 5267--5314 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
5257 TATGTTATTC
* * * *
5267 AAATTTTCAATCTCATGTTATTT
1 AAATTTTCAATATCAAGTAAATT
5290 AAATTTTCAATATCAAGTAAATT
1 AAATTTTCAATATCAAGTAAATT
5313 AA
1 AA
5315 TCTTTTATAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.42, C:0.10, G:0.04, T:0.44
Consensus pattern (23 bp):
AAATTTTCAATATCAAGTAAATT
Found at i:5696 original size:18 final size:17
Alignment explanation
Indices: 5673--5711 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 17
5663 AATATTATTG
*
5673 TTATTATAATTTTGGTTA
1 TTATTATAAGTTTGG-TA
5691 TTATTATAAGTTTGGTA
1 TTATTATAAGTTTGGTA
5708 TTAT
1 TTAT
5712 GTAGTTATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 6 0.30
18 14 0.70
ACGTcount: A:0.28, C:0.00, G:0.13, T:0.59
Consensus pattern (17 bp):
TTATTATAAGTTTGGTA
Found at i:9261 original size:18 final size:18
Alignment explanation
Indices: 9236--9299 Score: 83
Period size: 18 Copynumber: 3.4 Consensus size: 18
9226 CAAACAATAT
*
9236 TCCTTCGGGACATAGTGG
1 TCCTTCGGAACATAGTGG
* *
9254 TTCTTCGGAACAATCATTGG
1 TCCTTCGGAAC-AT-AGTGG
9274 TCCTTCGGAACATAGTGG
1 TCCTTCGGAACATAGTGG
9292 TCCTTCGG
1 TCCTTCGG
9300 GACAAATATT
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
18 21 0.54
19 4 0.10
20 14 0.36
ACGTcount: A:0.19, C:0.23, G:0.27, T:0.31
Consensus pattern (18 bp):
TCCTTCGGAACATAGTGG
Found at i:11505 original size:19 final size:19
Alignment explanation
Indices: 11481--11522 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
11471 TATTATAAAC
11481 TCAAAATCTCACAACTTCA
1 TCAAAATCTCACAACTTCA
* * *
11500 TCAAAATCTTATAATTTCA
1 TCAAAATCTCACAACTTCA
11519 TCAA
1 TCAA
11523 TGGTAATTTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.43, C:0.24, G:0.00, T:0.33
Consensus pattern (19 bp):
TCAAAATCTCACAACTTCA
Found at i:13482 original size:32 final size:32
Alignment explanation
Indices: 13441--13504 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
13431 TCAATGCCTT
13441 AGGAAATGTAGAAAGATGCAAAAAAAAGTGGC
1 AGGAAATGTAGAAAGATGCAAAAAAAAGTGGC
13473 AGGAAATGTAGAAAGATGCAAAAAAAAGTGGC
1 AGGAAATGTAGAAAGATGCAAAAAAAAGTGGC
13505 TAGCATAGCA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.53, C:0.06, G:0.28, T:0.12
Consensus pattern (32 bp):
AGGAAATGTAGAAAGATGCAAAAAAAAGTGGC
Found at i:18342 original size:136 final size:131
Alignment explanation
Indices: 18105--18371 Score: 392
Period size: 136 Copynumber: 2.0 Consensus size: 131
18095 AAGAAGAAGT
* *
18105 ATGAAGACTTACCGATCCAACATAGCAAACGACTTATAAGAAAAAGTATGAAAATCTTTATTATT
1 ATGAAAACTTACCGATCCAACATAGAAAACGACTTATAAG--AAAGTATGAAAATCTTTATTATT
*
18170 CTCTCCTCACCCTCTACAAGATAATTAGTCATAACTCTCAACCTAAATTAAAAAATTATTGAAGA
64 CTCTCCTCACCCTCTACAAGATAATTAGGCATAACTCTCAACCTAAATTAAAAAATTATTGAAGA
18235 TAA
129 TAA
* *
18238 ATGAAAACTTACCGATCCGACATAGAAAATGACTTATAAG-AAGTATGAAAATCTTTAGTGTGTC
1 ATGAAAACTTACCGATCCAACATAGAAAACGACTTATAAGAAAGTATGAAAATCTTTA-----T-
* *
18302 TATTCTCTTCTCTCCCTCTACAAGATAATTAGGCATAACTCTCAACCTAAATTAAAAAATTATTG
60 TATTCTCTCCTCACCCTCTACAAGATAATTAGGCATAACTCTCAACCTAAATTAAAAAATTATTG
18367 AAGAT
125 AAGAT
18372 CTCCGCAACC
Statistics
Matches: 121, Mismatches: 7, Indels: 9
0.88 0.05 0.07
Matches are distributed among these distances:
130 17 0.14
133 36 0.30
135 1 0.01
136 67 0.55
ACGTcount: A:0.41, C:0.19, G:0.10, T:0.30
Consensus pattern (131 bp):
ATGAAAACTTACCGATCCAACATAGAAAACGACTTATAAGAAAGTATGAAAATCTTTATTATTCT
CTCCTCACCCTCTACAAGATAATTAGGCATAACTCTCAACCTAAATTAAAAAATTATTGAAGATA
A
Found at i:24151 original size:12 final size:13
Alignment explanation
Indices: 24125--24149 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
24115 AAGTCATAAT
24125 TATTTTAAAAAAA
1 TATTTTAAAAAAA
24138 TATTTTAAAAAA
1 TATTTTAAAAAA
24150 TAAAAAATGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (13 bp):
TATTTTAAAAAAA
Found at i:25093 original size:12 final size:13
Alignment explanation
Indices: 25067--25091 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
25057 AAGTCATAAT
25067 TATTTTAAAAAAA
1 TATTTTAAAAAAA
25080 TATTTTAAAAAA
1 TATTTTAAAAAA
25092 TAAAAAATGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (13 bp):
TATTTTAAAAAAA
Found at i:26230 original size:13 final size:13
Alignment explanation
Indices: 26212--26245 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
26202 TAAGATTTTC
*
26212 TTTGAAAATCATT
1 TTTGAAAATCAAT
26225 TTTG-AAATCAAT
1 TTTGAAAATCAAT
26237 TTTGAAAAT
1 TTTGAAAAT
26246 TACTCCCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
12 11 0.58
13 8 0.42
ACGTcount: A:0.41, C:0.06, G:0.09, T:0.44
Consensus pattern (13 bp):
TTTGAAAATCAAT
Found at i:28033 original size:13 final size:12
Alignment explanation
Indices: 28000--28035 Score: 54
Period size: 12 Copynumber: 2.9 Consensus size: 12
27990 TAATGGGCAA
28000 AATTTTGAAAAC
1 AATTTTGAAAAC
*
28012 TATTTTGAAAAC
1 AATTTTGAAAAC
28024 AATATTTGAAAA
1 AAT-TTTGAAAA
28036 ATCATAATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
12 13 0.62
13 8 0.38
ACGTcount: A:0.50, C:0.06, G:0.08, T:0.36
Consensus pattern (12 bp):
AATTTTGAAAAC
Found at i:32252 original size:21 final size:20
Alignment explanation
Indices: 32211--32253 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
32201 TTAAACTCAT
* *
32211 TTAATTTGATTTTCAATTCA
1 TTAATTTGACTTTCAAATCA
*
32231 TTAATTTTACTTTCAAGATCA
1 TTAATTTGACTTTCAA-ATCA
32252 TT
1 TT
32254 GTTGGTCTTG
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 14 0.74
21 5 0.26
ACGTcount: A:0.30, C:0.12, G:0.05, T:0.53
Consensus pattern (20 bp):
TTAATTTGACTTTCAAATCA
Found at i:34388 original size:54 final size:54
Alignment explanation
Indices: 34324--34437 Score: 201
Period size: 54 Copynumber: 2.1 Consensus size: 54
34314 ATGTGCATCG
* *
34324 GTACATAAAATGCATTCGATGTTGGTGTGTATCGATGTATTCAAGAGTGTATCA
1 GTACATAAAATGCATTCGATGTTGGTGTGTATCAATGCATTCAAGAGTGTATCA
*
34378 GTACATAAAATGCATTCGATGTTGGTGTGTATCAATGCATTCAAGAGTGTATCG
1 GTACATAAAATGCATTCGATGTTGGTGTGTATCAATGCATTCAAGAGTGTATCA
34432 GTACAT
1 GTACAT
34438 CCCTTTGTAA
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
54 57 1.00
ACGTcount: A:0.30, C:0.12, G:0.24, T:0.34
Consensus pattern (54 bp):
GTACATAAAATGCATTCGATGTTGGTGTGTATCAATGCATTCAAGAGTGTATCA
Found at i:35973 original size:15 final size:15
Alignment explanation
Indices: 35953--35984 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
35943 GTGATAGTGT
*
35953 GGTATTTCGGGTTGA
1 GGTATTTAGGGTTGA
35968 GGTATTTAGGGTTGA
1 GGTATTTAGGGTTGA
35983 GG
1 GG
35985 GGGTGTGTTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.16, C:0.03, G:0.44, T:0.38
Consensus pattern (15 bp):
GGTATTTAGGGTTGA
Found at i:36771 original size:32 final size:32
Alignment explanation
Indices: 36730--36826 Score: 140
Period size: 32 Copynumber: 3.0 Consensus size: 32
36720 ATTTGGTGAT
*
36730 AGAAACTTTTCATTGATATATCACTTCATTTC
1 AGAAACTTTTCAGTGATATATCACTTCATTTC
* *
36762 AGAAACTTTTCAGTGATATATAACTTCATTTT
1 AGAAACTTTTCAGTGATATATCACTTCATTTC
* * *
36794 AGAAAATTTTCAGTGATATGTCATTTCATTTC
1 AGAAACTTTTCAGTGATATATCACTTCATTTC
36826 A
1 A
36827 AAAAATGGCA
Statistics
Matches: 57, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
32 57 1.00
ACGTcount: A:0.33, C:0.14, G:0.09, T:0.43
Consensus pattern (32 bp):
AGAAACTTTTCAGTGATATATCACTTCATTTC
Found at i:36933 original size:32 final size:32
Alignment explanation
Indices: 36897--36968 Score: 117
Period size: 32 Copynumber: 2.2 Consensus size: 32
36887 ATTACTTTAC
36897 TTTAGAAACTTTTCAATGATATATAACTTCAT
1 TTTAGAAACTTTTCAATGATATATAACTTCAT
* *
36929 TTTAGAAACTTTTCAATGATATATCACTTTAT
1 TTTAGAAACTTTTCAATGATATATAACTTCAT
*
36961 TTCAGAAA
1 TTTAGAAA
36969 AAACGGCATT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
32 37 1.00
ACGTcount: A:0.38, C:0.12, G:0.07, T:0.43
Consensus pattern (32 bp):
TTTAGAAACTTTTCAATGATATATAACTTCAT
Found at i:37028 original size:140 final size:140
Alignment explanation
Indices: 36752--37110 Score: 528
Period size: 140 Copynumber: 2.6 Consensus size: 140
36742 TTGATATATC
* * *
36752 ACTTCATTTCAGAAACTTTTCAGTGATATATAACTTCATTTTAGAAAATTTTCAGTGATATGTCA
1 ACTTCACTTCAGAAACTTTTCAGTGATATATAACTTCATTTTAGAAACTTTTCAGTGATATATCA
*
36817 -TTTCATTTC--AAAAAATGGCATTTTCTCATAGACCATTTAATGCACAATGACAAAAAAATTTC
66 CTTT-ATTTCAGAAAAAACGGCATTTTCTCATAGACCATTTAATGCACAATGACAAAAAAATTTC
36879 AGTACCCAATT
130 AGTACCCAATT
* * * *
36890 ACTTTACTTTAGAAACTTTTCAATGATATATAACTTCATTTTAGAAACTTTTCAATGATATATCA
1 ACTTCACTTCAGAAACTTTTCAGTGATATATAACTTCATTTTAGAAACTTTTCAGTGATATATCA
*
36955 CTTTATTTCAGAAAAAACGGCATTTTCTCAT-GCACCATTTAATGCGCAATGACAAAAAAATTTC
66 CTTTATTTCAGAAAAAACGGCATTTTCTCATAG-ACCATTTAATGCACAATGACAAAAAAATTTC
**
37019 AGTGTCCAATT
130 AGTACCCAATT
* * * *
37030 ACTTCACTTCAGAAACTTTTTAGTGATATATAACTTCATTTCAAAAACTTTTCGGTGATATATCA
1 ACTTCACTTCAGAAACTTTTCAGTGATATATAACTTCATTTTAGAAACTTTTCAGTGATATATCA
*
37095 CTTCATTTCAGAAAAA
66 CTTTATTTCAGAAAAA
37111 CATCATTTTC
Statistics
Matches: 197, Mismatches: 20, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
138 63 0.32
139 4 0.02
140 130 0.66
ACGTcount: A:0.36, C:0.17, G:0.09, T:0.37
Consensus pattern (140 bp):
ACTTCACTTCAGAAACTTTTCAGTGATATATAACTTCATTTTAGAAACTTTTCAGTGATATATCA
CTTTATTTCAGAAAAAACGGCATTTTCTCATAGACCATTTAATGCACAATGACAAAAAAATTTCA
GTACCCAATT
Found at i:37078 original size:32 final size:32
Alignment explanation
Indices: 37030--37109 Score: 106
Period size: 32 Copynumber: 2.5 Consensus size: 32
37020 GTGTCCAATT
* * *
37030 ACTTCACTTCAGAAACTTTTTAGTGATATATA
1 ACTTCATTTCAAAAACTTTTCAGTGATATATA
* *
37062 ACTTCATTTCAAAAACTTTTCGGTGATATATC
1 ACTTCATTTCAAAAACTTTTCAGTGATATATA
37094 ACTTCATTTCAGAAAA
1 ACTTCATTTCA-AAAA
37110 ACATCATTTT
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
32 38 0.90
33 4 0.10
ACGTcount: A:0.35, C:0.17, G:0.09, T:0.39
Consensus pattern (32 bp):
ACTTCATTTCAAAAACTTTTCAGTGATATATA
Found at i:37624 original size:20 final size:20
Alignment explanation
Indices: 37599--37636 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
37589 ATGGACAAAT
37599 TTGGTATCGATACCATGGTG
1 TTGGTATCGATACCATGGTG
*
37619 TTGGTATCGATACTATGG
1 TTGGTATCGATACCATGG
37637 GTGAGTATCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.21, C:0.13, G:0.29, T:0.37
Consensus pattern (20 bp):
TTGGTATCGATACCATGGTG
Found at i:39017 original size:3 final size:3
Alignment explanation
Indices: 39009--39162 Score: 238
Period size: 3 Copynumber: 51.0 Consensus size: 3
38999 GAAACTCCAA
*
39009 AAG AAG AAGG AAT AAG TAAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AA-G AAG AAG -AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
* * * *
39056 AAT AAG AAG AAT AAG AAG AAT AAG AAT AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
39104 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
39152 AAG AAG -AG AAG
1 AAG AAG AAG AAG
39163 GATAAGGAAC
Statistics
Matches: 138, Mismatches: 10, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
2 2 0.01
3 130 0.94
4 6 0.04
ACGTcount: A:0.66, C:0.00, G:0.31, T:0.04
Consensus pattern (3 bp):
AAG
Found at i:41050 original size:21 final size:20
Alignment explanation
Indices: 41007--41056 Score: 55
Period size: 21 Copynumber: 2.5 Consensus size: 20
40997 CATGGTGTTG
**
41007 GTATCGATATTTGTGGGTGA
1 GTATCGATATTTGTGAATGA
*
41027 GTATCGATATTATTTGAATGA
1 GTATCGATATT-TGTGAATGA
*
41048 GTATTGATA
1 GTATCGATA
41057 CCAATAGTTA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
20 11 0.44
21 14 0.56
ACGTcount: A:0.28, C:0.04, G:0.26, T:0.42
Consensus pattern (20 bp):
GTATCGATATTTGTGAATGA
Found at i:42297 original size:36 final size:36
Alignment explanation
Indices: 42211--42325 Score: 117
Period size: 37 Copynumber: 3.1 Consensus size: 36
42201 GTGTGTGTAA
* * * * *
42211 GGTTTATTGTATTTATGTCCTTAACGTAATGTGTTA-
1 GGTTTGTTGTTTTTATCTTCTTAATGTAATGT-TTAT
*
42247 GGTTTTGTTTTTTTTATCTTCTTAATGTAATGTTTAT
1 GG-TTTGTTGTTTTTATCTTCTTAATGTAATGTTTAT
*
42284 GGTTTGTTGTTTTTATC-TCTTTAATGTAATATTTTAT
1 GGTTTGTTGTTTTTATCTTC-TTAATGTAAT-GTTTAT
42321 GGTTT
1 GGTTT
42326 AGGGTTTAAT
Statistics
Matches: 67, Mismatches: 8, Indels: 7
0.82 0.10 0.09
Matches are distributed among these distances:
35 2 0.03
36 29 0.43
37 36 0.54
ACGTcount: A:0.18, C:0.06, G:0.17, T:0.59
Consensus pattern (36 bp):
GGTTTGTTGTTTTTATCTTCTTAATGTAATGTTTAT
Found at i:43765 original size:2 final size:2
Alignment explanation
Indices: 43758--43807 Score: 100
Period size: 2 Copynumber: 25.0 Consensus size: 2
43748 GTAATTGGAT
43758 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
43800 TA TA TA TA
1 TA TA TA TA
43808 CTAACCGGAT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 48 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:50505 original size:36 final size:36
Alignment explanation
Indices: 50465--50572 Score: 135
Period size: 36 Copynumber: 3.0 Consensus size: 36
50455 TCGAGTTAGT
* * **
50465 TTTTCTTCATCATAAATTCAAAATTGATATGACCTC
1 TTTTCTTCATCATAAATCCAAAATTAATACAACCTC
* *
50501 TTTTCTTCATCATAAATCCAAATTTAATCCAACCTC
1 TTTTCTTCATCATAAATCCAAAATTAATACAACCTC
* * *
50537 ATTTCTTCATCATAAATCCAAATTTAATCCAACCTC
1 TTTTCTTCATCATAAATCCAAAATTAATACAACCTC
50573 CTTAAAATAA
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
36 65 1.00
ACGTcount: A:0.34, C:0.25, G:0.02, T:0.39
Consensus pattern (36 bp):
TTTTCTTCATCATAAATCCAAAATTAATACAACCTC
Done.