genome.fa.s586.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000586.1 Hibiscus syriacus cultivar Beakdansim tig00001142_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  115265

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4914--4966	24	2.2	25	83	10	65	52	0	1	45	1.11
9031--9146	60	1.9	60	94	0	205	28	43	2	25	1.67
9166--9206	10	4.1	10	84	12	57	31	29	0	39	1.57
9329--9550	111	2.0	111	96	0	408	36	8	11	44	1.71
11444--11483	21	1.9	21	100	0	80	30	20	37	12	1.89
27021--27051	15	2.1	15	100	0	62	32	6	41	19	1.77
47388--47424	20	1.9	20	88	5	58	81	2	2	13	0.92
47388--47431	19	2.3	20	88	7	65	77	4	4	13	1.08
47670--47772	31	3.3	31	63	18	79	39	14	21	24	1.91
47663--47848	63	3.0	63	98	0	354	37	16	21	25	1.93
48812--48893	41	2.0	41	97	0	155	45	2	15	36	1.60
53444--53502	23	2.7	21	82	14	75	30	28	18	22	1.97
53458--53504	23	2.0	23	95	0	85	31	25	19	23	1.98
54414--54464	21	2.5	20	84	9	68	33	27	9	29	1.89
55766--55822	25	2.2	27	78	15	66	59	0	1	38	1.08
55773--55821	25	1.9	26	88	12	75	57	0	2	40	1.10
55773--55830	25	2.3	25	82	8	64	51	3	1	43	1.28
66261--66312	24	2.1	25	82	3	61	50	5	3	40	1.45
74422--74510	29	3.1	29	100	0	178	13	31	37	17	1.89
74532--74568	18	2.1	18	100	0	74	37	24	21	16	1.93
74550--74640	43	2.1	44	97	2	175	27	14	41	16	1.87
74612--74791	15	11.1	15	72	17	128	21	7	52	17	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74599--74725	65	1.9	66	95	3	229	23	9	50	16	1.74
74677--74818	51	2.8	51	94	3	245	21	7	52	18	1.69
75230--75278	21	2.3	21	82	3	62	32	0	16	51	1.45
75255--75315	28	2.2	28	93	0	104	32	0	11	55	1.36
75277--75386	48	2.4	45	81	14	129	40	0	8	50	1.38
75820--75864	21	2.2	21	84	4	56	35	0	8	55	1.31
76117--76175	26	2.3	25	75	18	66	47	8	3	40	1.51
76818--76908	45	2.0	47	87	8	134	46	12	0	41	1.41
76839--76977	41	3.3	40	76	14	111	46	11	0	41	1.45
77131--77169	4	9.5	4	83	5	51	0	33	0	66	0.92
77120--77169	25	2.0	25	100	0	100	0	36	0	64	0.94
77231--77282	25	2.1	25	92	0	86	28	32	9	28	1.89
77403--77449	23	2.0	23	100	0	94	21	8	44	25	1.80
77436--77467	13	2.5	13	94	0	55	31	3	46	18	1.65
77468--77576	29	3.8	29	91	2	166	22	30	32	15	1.95
77571--77734	43	3.9	43	74	15	187	18	34	24	22	1.96
77631--77762	41	3.2	41	66	19	119	16	31	28	23	1.96
77588--77765	84	2.1	84	97	0	338	17	32	27	22	1.97
77741--77853	35	3.2	35	100	0	226	19	20	33	26	1.96
81174--81217	22	2.0	22	100	0	88	45	13	9	31	1.75
87281--87394	42	2.7	42	88	0	165	21	15	42	20	1.88
87281--87407	42	3.0	41	85	4	130	22	14	42	19	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94206--94249	20	2.3	19	80	7	54	47	9	20	22	1.78
94399--94429	15	2.1	15	93	0	53	54	0	0	45	0.99
96538--96699	84	1.9	84	98	0	315	56	16	11	16	1.66
97561--97608	24	2.0	24	95	0	87	18	12	22	45	1.83
100493--100559	25	2.7	25	92	0	116	41	1	0	56	1.08
100773--100821	25	2.0	25	91	0	80	48	14	8	28	1.72
102011--102051	10	3.9	11	81	9	50	58	0	0	41	0.98
105144--105202	29	2.0	29	96	0	109	52	13	0	33	1.41
105495--105523	14	2.1	14	100	0	58	44	13	13	27	1.82

Tables:   1

The End!