Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005861.1 Hibiscus syriacus cultivar Beakdansim tig00013777_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44993

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
171--227
21
2.7
21
100
0
114
45
29
21
3
1.68
3273--3306
2
17.0
2
100
0
68
50
0
0
50
1.00
3497--3540
22
2.0
22
95
0
79
25
31
15
27
1.96
7103--7243
39
3.6
39
92
0
221
19
24
10
46
1.81
7181--7599
123
3.4
121
86
4
544
23
20
15
40
1.90
7666--7747
42
2.0
42
90
0
128
32
21
20
24
1.98
10437--10660
86
2.6
84
86
6
276
35
12
20
31
1.90
14712--14753
17
2.5
17
96
0
75
50
23
11
14
1.76
14990--15023
17
1.9
17
94
5
59
73
0
5
20
1.04
15010--15059
26
2.0
25
84
4
64
66
6
8
20
1.40
15862--15913
2
26.0
2
100
0
104
50
0
0
50
1.00
19078--19110
15
2.2
15
89
10
50
48
0
3
48
1.17
20656--20734
22
3.5
22
67
11
61
37
16
5
40
1.70
23660--24282
258
2.4
255
87
7
846
26
12
20
40
1.89
24649--24695
18
2.7
18
90
3
69
25
29
8
36
1.86
25432--25482
18
2.9
17
77
8
57
27
29
5
37
1.80
26253--26354
39
2.6
40
84
4
138
51
9
12
25
1.70
30060--30111
26
2.0
26
88
0
77
38
19
13
28
1.89
36122--36149
14
2.0
14
100
0
56
57
7
0
35
1.26
36243--36312
29
2.3
30
81
11
90
48
0
4
47
1.21
36255--36435
30
5.6
34
70
22
115
47
4
1
46
1.32
40535--40585
18
2.8
18
90
0
75
25
35
21
17
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43029--43161
69
1.9
69
92
0
221
39
33
12
15
1.84
43459--43542
44
1.9
44
92
0
141
28
16
9
45
1.79
44808--44854
2
25.0
2
87
12
73
51
0
0
48
1.00

Tables:   1

The End!