genome.fa.s5862.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005862.1 Hibiscus syriacus cultivar Beakdansim tig00013780_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42751

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2232--2260	15	1.9	15	100	0	58	58	13	6	20	1.58
6602--6631	12	2.4	13	88	11	53	60	0	0	40	0.97
6698--6757	19	3.2	18	72	9	57	75	1	1	21	0.99
6778--6828	2	26.5	2	92	7	88	52	0	0	47	1.00
8273--8355	35	2.4	35	92	4	134	44	9	4	40	1.58
8311--8335	12	2.1	12	100	0	50	44	8	8	40	1.63
8246--8361	35	3.5	33	81	9	128	40	7	6	44	1.60
8407--8432	2	13.0	2	100	0	52	50	0	0	50	1.00
8976--9726	248	3.0	245	79	5	816	24	20	24	30	1.98
8976--9726	165	4.6	165	87	3	883	24	20	24	30	1.98
8976--9748	329	2.3	327	83	3	926	24	20	24	30	1.99
14774--14803	12	2.4	13	88	11	53	60	0	0	40	0.97
14866--14922	4	15.0	4	72	17	50	73	0	1	24	0.92
14870--14923	19	2.9	18	76	10	63	74	0	1	24	0.92
14857--14922	23	3.0	22	72	16	64	69	0	4	25	1.07
14946--14980	2	17.5	2	100	0	70	51	0	0	48	1.00
16306--16388	34	2.4	36	78	11	93	46	6	0	46	1.27
16396--16511	36	3.4	34	78	12	107	40	7	6	44	1.60
16332--16448	60	2.0	59	81	5	137	41	5	5	47	1.50
16423--16493	36	2.0	36	94	0	124	45	9	5	39	1.61
16462--16486	12	2.1	12	100	0	50	44	8	8	40	1.63
16556--16602	2	24.0	2	95	4	87	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22805--22867	25	2.5	25	84	7	74	19	4	3	73	1.15
26644--28213	105	15.1	104	88	4	2239	33	25	18	22	1.97
27574--27728	43	3.4	43	70	13	141	34	25	18	21	1.96
29953--30007	26	2.2	25	86	3	74	18	5	3	72	1.18
30729--30787	24	2.3	26	81	18	72	16	8	1	72	1.17
34677--35468	106	7.6	106	91	4	1299	33	25	17	23	1.96
35029--35182	43	3.4	43	71	10	155	34	25	18	20	1.96
34684--35413	304	2.4	307	96	3	1313	34	25	17	23	1.96
34706--35468	410	1.9	410	94	0	1348	33	25	17	23	1.96
35955--35997	14	3.0	14	75	18	52	34	4	2	58	1.32
39726--39769	21	2.1	21	86	0	61	29	0	15	54	1.42

Tables:   1

The End!