genome.fa.s5863.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005863.1 Hibiscus syriacus cultivar Beakdansim tig00013782_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  126647

Tables:   1   

This is table  1  of  1  ( 75 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
419--538	64	1.9	62	82	3	150	33	21	19	25	1.97
1398--1471	23	3.3	22	81	7	87	25	24	21	28	1.99
5510--5540	15	2.1	14	94	5	53	6	32	0	61	1.21
6126--6200	20	3.7	19	74	13	60	29	21	25	24	1.99
6231--6284	27	2.0	27	100	0	108	33	14	18	33	1.92
7068--7133	23	2.9	23	81	0	78	27	25	19	27	1.99
9642--9699	25	2.3	25	90	0	89	22	18	24	34	1.96
9642--9713	25	2.9	24	85	6	74	23	19	25	31	1.98
21201--21251	24	2.1	24	100	0	102	39	3	23	33	1.73
21549--21675	32	4.0	33	78	9	131	25	18	22	33	1.97
22848--22890	21	2.0	21	100	0	86	69	9	0	20	1.15
24352--24425	20	3.7	20	85	7	114	28	31	14	25	1.95
24348--24545	20	9.8	21	73	12	112	35	26	16	22	1.94
24348--24553	40	5.1	41	76	11	158	35	25	16	22	1.94
24449--24553	20	5.2	20	78	13	117	41	23	17	17	1.89
24685--24726	22	1.9	22	90	0	66	30	35	11	21	1.90
24943--24976	13	2.6	13	95	0	59	0	5	11	82	0.83
27104--27199	21	4.6	21	74	5	86	22	33	19	23	1.97
28626--28665	14	2.9	14	80	0	53	30	0	17	52	1.45
28576--28715	66	2.2	62	86	7	185	30	0	17	51	1.50
28821--28865	20	2.2	20	88	0	72	37	24	20	17	1.93
29105--29187	39	2.1	39	93	0	139	16	14	21	46	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29502--29538	18	2.1	18	89	0	56	51	10	5	32	1.60
30538--30601	30	2.1	30	85	0	83	34	28	18	18	1.95
31275--31486	64	3.3	63	79	5	205	29	17	20	32	1.96
34804--34867	30	2.1	30	88	0	92	34	26	18	20	1.96
35541--35752	64	3.3	63	79	5	205	29	18	19	32	1.96
36633--36682	25	2.0	25	92	0	82	44	20	8	28	1.79
36632--36681	14	3.8	13	72	17	50	44	22	8	26	1.80
36773--36833	20	3.0	20	87	0	95	34	22	21	21	1.97
39636--39669	12	2.8	12	90	0	50	14	0	29	55	1.40
40415--40474	19	3.2	19	85	4	77	30	10	21	38	1.86
40439--40489	19	2.7	19	87	6	59	35	11	15	37	1.84
51528--51588	19	3.2	19	69	6	52	52	0	0	47	1.00
55756--55834	39	2.0	39	90	0	122	51	8	15	24	1.71
60584--60652	31	2.3	29	79	15	79	56	0	4	39	1.19
60592--60652	31	2.0	31	87	6	88	54	0	4	40	1.22
60645--60674	2	15.0	2	100	0	60	50	0	0	50	1.00
60685--60800	27	4.1	27	74	14	83	50	2	6	39	1.43
60932--60985	28	1.9	28	88	0	81	53	1	5	38	1.35
62224--62776	55	10.1	55	90	1	801	34	19	12	33	1.89
66437--66632	5	39.2	5	70	21	119	53	3	1	41	1.27
66445--66609	18	8.6	19	71	23	91	52	3	1	41	1.29
66441--66634	7	24.8	8	68	24	80	53	3	1	41	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66542--66635	2	50.0	2	76	19	96	50	2	2	45	1.25
66508--66632	29	3.9	32	80	12	125	51	2	2	44	1.27
67074--67261	98	1.9	98	90	0	295	26	18	19	35	1.95
67279--67743	203	2.3	200	85	2	617	27	19	18	34	1.95
69737--69818	24	3.5	24	88	1	103	19	20	28	31	1.97
69737--69831	24	4.0	24	86	2	102	21	21	27	30	1.98
69737--69831	47	2.0	47	83	4	118	21	21	27	30	1.98
74857--75594	106	7.0	106	93	2	1265	23	18	25	33	1.97
76356--76448	47	1.9	49	86	4	136	15	25	15	44	1.85
86771--86823	22	2.4	22	81	6	63	75	3	9	11	1.16
88335--88373	19	2.1	19	85	0	51	53	0	7	38	1.30
88781--88825	14	3.1	14	78	6	54	80	2	8	8	1.00
90230--90268	19	2.1	19	85	0	51	53	0	7	38	1.30
90613--91455	106	8.0	106	94	2	1468	22	18	25	33	1.97
92412--92450	19	2.1	19	85	0	51	53	0	7	38	1.30
92797--93639	106	8.0	106	94	2	1459	22	18	25	33	1.97
94403--94495	47	1.9	49	86	4	136	15	25	15	44	1.85
104689--104741	22	2.4	22	81	6	63	75	3	9	11	1.16
104910--105019	3	38.0	3	71	15	54	64	2	4	28	1.27
105072--105120	21	2.3	21	79	6	55	65	8	2	24	1.31
106590--106635	23	2.0	23	83	8	58	63	4	2	30	1.26
108414--108461	23	2.1	23	92	0	78	35	8	8	47	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
111685--111786	31	3.4	30	85	6	136	35	10	12	41	1.78
111866--111970	29	3.6	29	84	6	149	40	12	9	38	1.76
111835--112003	59	2.8	57	77	13	171	42	9	10	37	1.72
112005--112039	18	1.9	19	88	11	56	28	14	2	54	1.54
113407--113533	49	2.6	49	87	2	166	29	11	12	45	1.78
113449--113551	49	2.1	49	81	0	116	33	11	13	40	1.81
124840--124959	30	4.0	29	72	9	89	33	19	18	29	1.95
124855--124959	30	3.5	30	76	5	104	36	17	17	29	1.92
125623--125678	22	2.7	20	89	10	94	25	28	17	28	1.98

Tables:   1

The End!