Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005864.1 Hibiscus syriacus cultivar Beakdansim tig00013783_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72299

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4992--5096
33
3.2
31
77
11
77
34
0
3
61
1.14
5014--5097
34
2.5
31
83
9
87
39
0
2
58
1.11
5081--5131
17
3.1
16
78
21
52
27
1
7
62
1.33
6839--6920
21
3.9
21
87
6
103
19
32
25
21
1.97
9975--9999
13
1.9
13
100
0
50
40
0
0
60
0.97
11118--11188
21
3.4
21
94
1
117
23
19
15
40
1.90
11078--11196
21
5.8
21
79
3
80
29
21
15
32
1.95
11101--11196
42
2.3
41
78
1
111
26
20
17
35
1.95
11181--11231
20
2.5
20
83
0
75
39
23
15
21
1.92
11219--11269
19
2.7
19
93
0
93
39
23
7
29
1.83
12011--12044
12
2.8
12
90
0
50
55
29
0
14
1.40
14463--14509
24
2.0
24
86
0
67
51
25
4
19
1.65
14824--14885
20
3.1
20
90
0
106
19
20
25
33
1.96
14976--15025
25
2.0
25
96
0
91
26
8
22
44
1.80
15404--15455
24
2.2
24
89
0
77
36
3
15
44
1.65
17581--17676
21
4.6
21
74
8
88
23
18
33
23
1.97
17581--17680
42
2.4
42
81
9
123
24
18
34
24
1.96
18080--18129
21
2.4
21
82
0
64
34
32
16
18
1.92
20122--20172
22
2.3
22
86
0
66
25
11
39
23
1.89
30560--30729
92
1.9
90
85
7
236
41
8
11
37
1.73
31919--32236
159
2.0
159
100
0
636
37
11
20
31
1.88
38567--38639
31
2.4
31
90
2
112
30
23
6
39
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39699--39724
8
3.2
8
100
0
52
15
38
0
46
1.46
41991--42053
30
2.1
30
100
0
126
33
25
4
36
1.77
49013--50738
569
3.0
576
96
2
3190
40
14
16
28
1.88
51144--51219
2
38.0
2
100
0
152
50
0
0
50
1.00
51354--51384
11
2.8
11
100
0
62
19
9
35
35
1.85
52572--52669
46
2.1
46
100
0
196
38
6
9
45
1.61
64794--64853
23
2.6
24
84
10
72
51
1
3
43
1.28
64809--64867
23
2.6
23
83
2
75
49
1
5
44
1.34
69333--69357
3
8.3
3
100
0
50
36
0
0
64
0.94
70148--70215
22
3.0
23
85
8
68
29
29
23
17
1.97
70157--70223
22
3.0
22
93
4
109
26
28
25
19
1.99
70978--71009
2
16.0
2
93
0
55
46
3
0
50
1.17
71832--71875
21
2.2
20
87
4
61
15
25
27
31
1.96

Tables:   1

The End!