Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005865.1 Hibiscus syriacus cultivar Beakdansim tig00013788_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  92730

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4569--4615
24
2.0
24
83
8
60
25
23
14
36
1.93
11919--11953
6
5.8
6
100
0
70
0
51
14
34
1.42
14738--14799
29
2.1
29
84
0
79
41
12
17
27
1.86
29037--29087
19
2.6
20
82
17
63
33
15
0
50
1.44
32000--32031
12
2.7
12
95
0
55
12
25
3
59
1.48
31999--32040
12
3.5
12
83
6
50
11
23
2
61
1.42
34502--34567
25
2.8
24
78
15
73
43
4
0
51
1.22
34637--34685
17
3.1
17
69
22
52
57
4
0
38
1.18
34616--34766
57
2.6
59
76
14
159
56
1
3
38
1.26
34688--34784
31
3.1
31
79
10
108
56
0
4
39
1.18
34750--34808
22
2.5
24
78
15
70
64
0
1
33
1.04
34776--34826
17
3.0
17
85
8
68
66
0
0
33
0.92
35007--35036
7
4.3
7
91
0
51
70
3
0
26
1.03
35309--35418
57
1.9
58
86
1
159
50
10
12
26
1.73
35503--35538
13
2.8
12
88
12
54
80
0
11
8
0.90
35701--35732
3
10.7
3
100
0
64
68
0
0
31
0.90
38274--38302
13
2.2
13
100
0
58
6
62
31
0
1.22
39052--39179
3
41.7
3
84
7
132
59
0
0
39
1.03
39305--40023
76
9.5
76
97
0
1341
36
20
21
21
1.96
39305--40023
229
3.2
228
97
0
1341
36
20
21
21
1.96
40688--40742
22
2.5
22
90
0
92
38
14
12
34
1.84
41105--41213
54
2.1
52
85
3
146
22
20
15
41
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42004--42181
74
2.4
75
84
4
234
29
20
16
33
1.94
50846--51046
111
1.8
111
88
4
300
41
10
9
38
1.73
51867--51895
13
2.2
13
100
0
58
6
62
31
0
1.22
52643--52770
3
41.7
3
84
7
141
60
0
0
39
1.03
64758--64842
31
2.7
32
80
12
95
54
23
0
22
1.45
64828--64908
16
5.1
16
76
0
81
58
19
0
22
1.40
64830--64940
16
7.4
16
71
17
76
55
19
0
24
1.43
64884--64942
25
2.3
26
94
5
111
57
18
0
23
1.40
66628--66664
7
5.3
7
93
0
65
16
0
43
40
1.48
70015--70476
149
3.1
149
95
2
824
34
21
17
26
1.95
71370--71404
18
1.9
18
88
11
54
22
17
5
54
1.64
71987--72031
21
2.1
21
87
0
63
15
24
28
31
1.96
75286--75330
23
2.0
23
90
0
72
28
26
22
22
1.99
75298--75748
149
3.1
147
93
4
751
34
21
17
26
1.95
76627--76661
18
1.9
18
88
11
54
22
17
5
54
1.64
77245--77289
21
2.1
21
87
0
63
15
24
28
31
1.96
78999--79056
24
2.4
24
91
0
89
31
22
20
25
1.98
89251--89289
20
2.1
19
85
9
53
43
0
0
56
0.99
89379--89481
16
6.5
15
64
10
53
14
13
29
42
1.84
89445--89496
16
3.2
16
75
0
50
9
7
30
51
1.62
89424--89523
32
3.1
31
85
2
128
11
10
27
52
1.68
89455--89502
16
3.0
16
71
0
51
6
8
31
54
1.55

Tables:   1

The End!