Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005866.1 Hibiscus syriacus cultivar Beakdansim tig00013789_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84908

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
706--751
10
4.4
10
89
8
65
76
0
21
2
0.90
4933--5010
34
2.3
34
84
4
104
21
12
21
43
1.86
4949--5029
34
2.4
34
85
4
101
20
13
24
40
1.89
8582--8629
15
3.1
15
71
11
51
37
6
8
47
1.59
8623--8681
17
3.5
17
76
0
55
50
10
3
35
1.53
12223--12296
34
2.2
34
85
4
96
41
0
0
58
0.98
12223--12277
3
19.0
3
88
7
87
36
0
0
63
0.95
13568--13648
41
2.0
41
80
9
94
28
2
4
64
1.27
14511--14568
28
2.1
27
90
3
89
31
5
0
63
1.16
23626--23709
15
5.7
14
76
18
66
78
1
11
8
1.01
23660--23739
28
2.9
28
73
16
78
80
0
8
11
0.92
23636--23744
42
2.5
43
85
8
141
78
0
10
10
1.00
24751--24798
22
2.2
22
100
0
96
35
12
14
37
1.84
25144--25480
112
3.0
112
90
0
532
37
16
18
27
1.92
25927--25993
28
2.4
28
87
5
91
40
0
0
59
0.97
25928--25976
3
16.0
3
87
4
71
36
0
0
63
0.95
28250--28280
10
3.1
10
95
0
53
61
12
19
6
1.53
43550--43586
18
2.1
18
100
0
74
32
35
5
27
1.79
44506--44541
3
12.3
3
94
5
65
69
0
0
30
0.89
46587--46634
21
2.3
21
85
7
62
68
6
4
20
1.28
53839--53869
15
2.1
15
100
0
62
29
32
6
32
1.83
60317--60372
21
2.7
21
85
0
76
37
14
19
28
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60905--60938
15
2.3
15
89
0
50
20
14
41
23
1.89
60916--60948
15
2.2
15
94
0
57
18
12
45
24
1.83
70613--70671
6
9.8
6
100
0
118
16
50
0
32
1.46
73134--73189
22
2.7
20
89
10
94
28
17
28
25
1.98
73879--73999
62
1.9
62
85
8
165
28
19
20
31
1.97
73879--73999
31
3.9
31
76
5
109
28
19
20
31
1.97
74127--74163
20
1.9
19
89
10
58
45
10
24
18
1.81
74314--74388
36
2.0
38
85
10
102
48
4
1
46
1.29
75297--75338
21
2.0
22
95
4
77
19
16
19
45
1.86

Tables:   1

The End!