genome.fa.s5868.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005868.1 Hibiscus syriacus cultivar Beakdansim tig00013795_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  101581

Tables:   1   

This is table  1  of  1  ( 86 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
393--450	30	1.9	31	93	6	102	32	5	17	44	1.70
540--616	20	4.1	20	73	20	67	24	36	25	12	1.92
557--616	20	3.2	20	73	22	76	25	40	25	10	1.86
566--595	15	2.0	15	93	0	51	30	33	23	13	1.93
651--688	20	1.9	20	94	0	67	18	42	23	15	1.89
724--767	22	2.0	21	86	4	61	22	20	31	25	1.98
1050--1113	34	1.9	32	87	6	92	29	17	29	23	1.97
3877--3936	30	2.0	30	93	6	104	33	6	16	43	1.74
4023--4098	20	4.1	19	73	23	72	23	35	27	13	1.92
4048--4076	14	2.0	15	93	6	51	27	31	27	13	1.94
4132--4174	21	2.0	21	100	0	86	13	44	27	13	1.83
4211--4253	21	2.0	21	95	0	77	23	20	27	27	1.99
6837--6869	14	2.5	13	90	9	57	78	0	0	21	0.75
7181--7218	20	1.9	20	88	0	58	21	26	10	42	1.85
7220--7269	20	2.5	20	83	0	64	40	20	16	24	1.91
8821--8925	42	2.5	42	84	3	131	27	34	18	20	1.95
9039--9091	21	2.5	21	81	0	70	20	13	32	33	1.91
9283--9316	4	8.5	4	86	0	50	26	0	2	70	1.01
9461--9557	21	4.6	21	90	0	149	21	37	19	21	1.95
12547--12607	23	2.7	23	89	0	86	29	26	22	21	1.99
12623--12848	103	2.2	103	91	1	373	37	23	12	26	1.91
16634--16687	24	2.2	24	86	0	72	44	16	18	20	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17624--17691	20	3.4	20	73	15	68	33	10	23	32	1.88
17625--17701	40	1.9	40	89	0	118	36	9	22	32	1.85
17757--17842	41	2.1	41	84	4	111	31	12	25	30	1.93
17736--17853	21	5.7	20	83	7	121	28	14	26	30	1.95
18122--18194	26	2.7	25	71	21	67	23	16	19	41	1.90
18209--18243	16	2.2	16	89	0	52	17	28	20	34	1.95
19696--20713	202	4.9	209	91	3	1572	34	18	8	38	1.82
19696--20709	411	2.4	414	91	3	1599	34	18	8	38	1.82
20960--21989	521	2.0	513	94	2	1830	34	12	17	35	1.88
30669--30707	21	1.9	20	84	5	51	51	10	0	38	1.36
37747--37780	18	1.9	18	88	5	52	14	20	32	32	1.93
38103--38137	17	2.1	17	94	0	61	62	5	0	31	1.18
38736--38837	51	2.0	51	100	0	204	25	23	23	27	2.00
39881--39941	28	2.1	29	87	3	88	49	9	3	37	1.52
40547--40580	16	2.1	16	89	10	52	58	0	0	41	0.98
48637--48672	18	1.9	18	88	5	54	0	11	11	77	0.99
48637--48705	21	3.3	20	80	7	75	0	8	11	79	0.93
48656--48689	13	2.5	13	95	4	59	0	11	8	79	0.94
48679--48704	12	2.2	12	100	0	52	0	0	7	92	0.39
56327--56388	16	3.9	15	91	6	81	38	12	20	27	1.90
56562--56599	20	1.9	20	100	0	76	26	21	23	28	1.99
56990--57036	2	23.5	2	100	0	94	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65249--65360	29	3.9	29	96	0	197	20	42	27	8	1.82
65367--65476	30	3.7	30	90	0	175	23	46	19	10	1.81
66072--66115	21	2.1	21	91	0	70	29	0	15	54	1.42
66092--66145	28	1.9	28	96	0	99	29	0	12	57	1.36
67693--67960	10	26.7	10	66	21	53	39	0	14	44	1.49
67813--67961	21	7.4	20	62	20	60	40	0	14	44	1.45
67968--68032	22	3.0	22	80	8	71	36	0	6	56	1.24
67640--67979	60	5.7	60	95	2	612	40	0	14	45	1.47
68004--68051	14	3.6	14	81	16	66	35	0	16	47	1.47
68004--68052	25	2.0	25	95	0	89	36	0	16	46	1.47
68124--68150	7	3.9	7	100	0	54	55	14	14	14	1.70
68146--68283	26	5.5	26	74	14	103	44	2	10	42	1.50
68146--68364	98	2.2	98	96	1	404	43	1	10	44	1.48
68217--68364	26	5.9	26	73	12	121	43	2	9	45	1.48
68326--68417	24	3.8	24	73	9	80	43	2	4	50	1.34
68325--68420	11	7.9	12	75	14	81	43	2	4	50	1.33
68377--68426	24	2.1	24	81	7	57	48	2	4	46	1.32
68506--68570	14	5.2	13	75	17	50	38	7	7	46	1.61
68517--68550	11	3.2	11	83	8	52	38	8	5	47	1.59
68517--68560	21	2.1	21	86	0	61	40	9	4	45	1.56
68555--68587	17	1.9	17	100	0	66	36	6	9	48	1.60
70724--70753	14	2.1	14	93	0	51	56	6	0	36	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70814--70882	34	2.1	32	81	13	77	46	11	0	42	1.40
70878--70921	12	3.5	12	85	11	61	54	18	0	27	1.44
70951--71039	43	2.0	46	82	12	114	48	11	0	40	1.39
71021--71108	41	2.2	39	78	10	88	46	10	1	42	1.45
71144--71182	16	2.3	18	86	8	55	56	5	0	38	1.22
71192--71236	19	2.4	19	82	10	56	2	33	0	64	1.06
71207--71237	15	2.0	16	93	6	55	0	35	0	64	0.94
71393--71499	49	2.2	48	91	6	173	22	18	38	20	1.94
71534--71628	29	3.3	29	95	0	163	23	32	30	13	1.93
71615--71686	32	2.2	32	90	0	117	8	30	30	30	1.87
71701--71738	19	2.0	19	100	0	76	10	21	36	31	1.87
75945--76028	43	2.0	42	90	2	132	57	4	23	14	1.56
76656--76696	21	2.0	21	90	0	64	43	0	14	41	1.45
78201--78250	18	2.6	20	84	6	68	26	28	20	26	1.99
80253--80338	43	2.0	43	97	0	163	32	8	23	36	1.84
80301--80538	123	1.9	122	88	0	359	40	8	10	40	1.69
82335--82399	30	2.2	30	85	0	85	12	24	24	38	1.90
83357--83394	20	1.9	20	88	0	58	26	21	18	34	1.96
88090--88134	24	1.9	23	86	4	63	33	26	6	33	1.83
88176--88222	25	2.0	23	88	12	69	38	23	4	34	1.74

Tables:   1

The End!