genome.fa.s5869.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005869.1 Hibiscus syriacus cultivar Beakdansim tig00013797_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79244

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2714--2748	16	2.2	16	100	0	70	34	25	14	25	1.94
6220--6846	54	11.7	54	82	6	631	35	15	17	31	1.91
13518--13558	7	5.9	7	86	11	57	0	2	9	87	0.62
17419--17454	18	2.0	18	94	0	63	19	11	25	44	1.83
23064--23106	17	2.6	16	78	10	50	25	9	4	60	1.47
32091--32119	12	2.3	13	94	5	51	55	6	13	24	1.63
33133--33180	15	3.5	15	73	26	61	12	22	14	50	1.77
33134--33183	25	2.0	25	100	0	100	12	20	16	52	1.75
34659--34689	16	1.9	16	93	0	53	54	3	3	38	1.32
36091--36150	3	20.0	3	79	6	68	63	1	0	35	1.05
39674--39733	29	2.1	29	83	0	75	65	8	13	13	1.48
41301--41376	3	25.3	3	84	10	102	63	0	1	35	1.03
41567--41850	46	6.6	44	75	13	200	23	19	30	26	1.98
41697--41857	83	1.9	85	85	7	227	22	19	31	25	1.98
41528--41847	129	2.5	129	94	0	541	24	19	30	26	1.98
41876--41938	28	2.2	28	86	5	83	44	12	14	28	1.82
41896--41971	28	2.6	28	82	14	93	46	11	15	26	1.81
41973--42162	66	2.9	65	70	11	154	38	14	17	29	1.89
42359--42402	15	2.9	15	89	0	61	45	4	18	31	1.69
42498--42577	40	2.0	40	87	4	117	37	11	20	31	1.87
42559--42683	64	2.0	63	85	3	171	42	12	15	30	1.83
42851--43073	67	3.5	64	83	7	247	46	13	11	29	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42925--43041	37	3.4	37	66	16	104	46	11	11	30	1.76
43029--43085	27	2.1	27	93	0	96	45	15	7	31	1.73
43072--43174	52	2.0	53	90	1	163	34	16	13	34	1.88
43170--43262	26	3.4	27	80	15	95	49	12	9	27	1.72
43576--43814	105	2.3	104	85	5	317	39	11	19	29	1.87
43781--43915	35	3.8	36	81	6	168	34	13	20	31	1.91
43781--43915	36	3.9	34	81	7	164	34	13	20	31	1.91
43781--43913	70	1.9	71	89	4	207	33	13	20	32	1.91
44273--44320	12	3.7	12	75	20	51	22	0	27	50	1.50
44273--44320	16	3.2	16	72	22	59	22	0	27	50	1.50
46141--46211	20	3.2	20	70	18	61	42	11	22	23	1.86
46140--46219	26	3.3	26	68	20	82	42	10	23	23	1.84
46128--46221	46	2.1	45	89	2	143	39	9	24	26	1.86
50425--50484	29	2.1	29	83	0	75	65	8	13	13	1.48
52065--52131	3	22.0	3	88	8	100	64	0	0	35	0.94
54152--54224	35	2.2	33	82	7	92	47	17	5	28	1.70
54869--54993	65	2.0	63	81	6	146	34	5	11	48	1.62
54972--55015	16	2.7	16	85	3	61	31	4	9	54	1.52
55692--55735	21	2.1	21	86	0	61	22	2	34	40	1.67
56351--56385	15	2.3	15	100	0	70	31	0	40	28	1.57
58273--58727	54	8.4	54	86	0	597	36	18	13	31	1.89
58279--58708	108	4.0	108	91	0	671	36	17	13	32	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63169--63216	20	2.5	19	86	6	62	27	12	29	31	1.93
63258--63319	22	2.8	22	92	0	97	38	16	17	27	1.91
63728--64032	60	5.1	60	83	3	346	35	11	22	30	1.90
67510--67852	54	6.3	54	86	2	474	36	17	13	32	1.89
67473--67852	108	3.5	108	88	3	523	36	17	13	32	1.89
69964--69999	18	1.9	19	94	5	65	41	0	22	36	1.54
70654--70709	27	2.1	27	93	0	94	21	12	21	44	1.85
73643--73692	14	3.6	14	84	15	68	32	20	24	24	1.98

Tables:   1

The End!