genome.fa.s5870.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005870.1 Hibiscus syriacus cultivar Beakdansim tig00013798_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66117

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3590--3620	2	15.5	2	100	0	62	51	0	48	0	1.00
4854--4920	6	11.2	6	96	0	107	29	49	16	4	1.65
10768--10808	6	6.8	6	97	0	73	34	46	19	0	1.50
16813--16946	41	3.3	40	77	3	133	36	20	18	23	1.95
16835--16948	20	5.7	20	81	2	138	39	20	19	21	1.93
16935--16978	20	2.2	20	91	0	70	29	27	20	22	1.99
19181--19299	34	3.4	33	75	16	103	39	21	21	16	1.92
19200--19268	20	3.5	19	84	15	95	36	24	21	17	1.95
19240--19335	33	2.8	33	90	3	138	41	20	23	13	1.88
19196--19339	20	7.9	19	72	18	74	41	20	22	14	1.89
19350--19434	33	2.5	33	94	1	143	12	23	18	44	1.85
19372--19425	14	3.5	14	73	22	54	11	24	20	44	1.83
19551--19587	14	2.6	14	86	0	56	48	21	0	29	1.50
19683--19726	15	2.9	15	89	3	70	13	31	29	25	1.94
19776--19832	15	3.7	15	72	9	60	19	26	33	21	1.97
22048--22176	20	6.4	20	96	0	195	36	23	20	20	1.95
22221--22287	20	3.3	21	87	4	77	20	16	22	40	1.91
22327--22377	20	2.5	20	90	0	75	19	17	21	41	1.91
24256--24310	20	2.8	20	85	0	74	49	21	16	12	1.79
24257--24370	33	3.2	33	73	17	95	43	23	18	14	1.86
24695--24760	22	3.0	22	90	0	105	21	15	39	24	1.91
24939--25031	20	4.7	18	78	15	87	21	20	20	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24939--25087	40	3.7	40	86	2	174	21	19	20	38	1.93
24957--25087	20	6.5	20	84	1	181	21	19	19	40	1.92
24957--25087	61	2.2	61	90	1	201	21	19	19	40	1.92
25089--25132	21	2.1	21	91	0	70	43	13	25	18	1.86
25753--26032	44	6.3	42	76	12	134	25	17	6	50	1.70
25795--25979	96	1.9	95	86	7	259	24	17	5	51	1.67
25890--26116	44	5.2	44	84	5	259	26	19	7	45	1.77
25890--26116	87	2.6	86	84	6	271	26	19	7	45	1.77
33672--33718	17	2.6	18	83	13	60	63	4	2	29	1.25
33685--33723	18	2.2	18	90	4	62	64	2	2	30	1.21
33935--34041	51	2.1	51	80	1	117	26	28	28	16	1.97
42887--42929	11	3.7	11	93	6	68	76	0	20	2	0.89
44464--44516	21	2.5	21	81	3	61	24	20	16	37	1.93
47160--47237	34	2.3	34	84	4	104	21	12	21	43	1.86
47176--47256	34	2.4	34	85	4	101	20	13	24	40	1.89
50826--50895	17	4.1	17	79	0	77	42	8	7	41	1.63
54471--54519	3	17.0	3	87	8	75	36	0	0	63	0.95
55811--55891	41	2.0	41	80	9	94	28	2	4	64	1.27
55982--56274	146	2.0	148	84	8	389	37	6	8	47	1.58
56749--56826	27	3.0	26	82	12	81	28	3	1	66	1.17
65840--65897	23	2.5	23	81	10	64	77	1	12	8	1.06
65850--65902	12	4.2	13	75	22	51	77	1	9	11	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65857--65925	35	1.9	35	85	8	95	78	0	7	14	0.96

Tables:   1

The End!