Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005871.1 Hibiscus syriacus cultivar Beakdansim tig00013800_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  111578

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
537--576
21
1.9
21
85
10
55
47
5
0
47
1.24
2994--3137
7
20.1
7
65
16
55
42
2
6
48
1.42
3092--3131
21
2.0
20
95
5
71
52
2
0
45
1.14
3761--3858
32
3.1
32
84
0
124
25
16
19
38
1.92
7190--7264
21
3.6
21
75
12
73
60
2
1
36
1.20
18119--18154
18
2.0
18
94
0
63
22
2
16
58
1.51
27664--27722
31
1.9
31
96
0
109
28
8
10
52
1.64
27659--27730
31
2.3
31
85
0
108
27
9
13
48
1.74
37772--37801
7
4.3
7
91
0
51
26
0
70
3
1.03
40625--40672
2
24.0
2
100
0
96
50
0
0
50
1.00
48299--48438
74
1.9
74
80
5
167
27
17
12
42
1.85
50152--50191
20
2.0
20
95
0
71
42
10
5
42
1.60
50564--50640
41
2.0
40
89
7
122
45
11
24
18
1.82
51148--51179
2
16.0
2
93
0
55
46
0
53
0
1.00
52077--52135
29
2.0
29
90
3
91
57
5
0
37
1.21
53585--53639
28
2.0
28
85
7
76
34
16
7
41
1.76
55101--55147
25
1.9
24
87
12
69
55
0
4
40
1.19
55101--55156
21
2.4
23
88
11
80
53
0
5
41
1.24
55101--55173
23
3.0
24
77
22
73
53
0
4
42
1.20
55191--55234
18
2.4
19
81
7
56
27
4
0
68
1.09
55229--55279
26
1.9
27
84
4
68
54
1
3
39
1.30
55412--55501
39
2.3
39
77
11
103
44
3
16
35
1.64
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
58582--58612
16
1.9
16
100
0
62
32
0
12
54
1.38
58573--58626
20
2.7
21
80
8
67
37
0
11
51
1.37
58817--58852
8
4.5
8
89
0
54
41
8
0
50
1.33
64673--64719
20
2.5
19
86
6
60
36
17
21
25
1.94
64939--65001
29
2.2
29
97
0
117
34
12
19
33
1.89
66977--67025
21
2.5
20
86
6
64
65
6
12
16
1.45
68934--69707
105
7.4
105
91
2
1200
23
17
25
33
1.97
81213--81261
21
2.5
20
86
6
64
65
6
12
16
1.45
82856--82885
14
2.1
14
93
0
51
30
10
13
46
1.75
86645--86944
150
2.0
150
97
0
564
30
17
9
43
1.80
90936--90994
30
2.0
30
93
0
100
27
25
15
32
1.95
97766--97854
42
2.1
41
87
6
124
33
3
11
51
1.54
101610--101637
2
14.0
2
100
0
56
50
0
0
50
1.00
106433--106500
31
2.2
31
84
10
86
22
17
26
33
1.96
109449--109491
18
2.4
18
100
0
86
6
23
18
51
1.70
110913--110989
11
7.5
10
70
15
50
50
3
1
44
1.28

Tables:   1

The End!