Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005872.1 Hibiscus syriacus cultivar Beakdansim tig00013801_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  130137

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5938--5969
6
5.3
6
100
0
64
0
15
0
84
0.63
9044--9084
20
2.0
20
85
0
55
39
4
0
56
1.21
9152--9204
18
2.9
18
72
11
54
43
5
0
50
1.25
10196--10222
14
1.9
14
100
0
54
48
7
0
44
1.31
11603--11652
2
25.0
2
100
0
100
50
0
0
50
1.00
11690--11832
68
2.1
67
81
15
170
69
2
6
21
1.21
11914--11951
2
19.0
2
94
0
67
47
0
0
52
1.00
12015--12053
15
2.7
15
92
4
62
66
10
0
23
1.22
13620--14670
106
9.9
106
93
0
1721
23
18
25
33
1.97
13611--14670
211
5.0
212
92
0
1723
23
18
25
33
1.97
18429--18486
21
2.5
22
75
13
64
72
0
3
24
1.00
18436--18487
21
2.7
20
85
11
72
75
0
1
23
0.91
18495--18562
4
16.5
4
77
17
52
73
2
2
20
1.09
18717--18755
15
2.7
15
92
4
62
66
10
0
23
1.22
20185--20358
87
2.0
87
98
1
341
28
8
14
48
1.73
23663--23692
14
2.1
14
93
0
51
50
6
0
43
1.28
23768--23808
11
3.6
11
80
6
55
29
21
24
24
1.99
26616--26655
20
2.0
20
100
0
80
25
15
10
50
1.74
30840--30878
19
2.1
19
90
0
60
23
35
15
25
1.94
30826--30988
65
2.5
65
84
3
213
30
26
15
26
1.96
36777--36826
22
2.4
21
83
12
59
30
22
18
30
1.97
38359--38398
21
1.9
21
84
0
53
7
37
15
40
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38737--38767
8
3.9
8
100
0
62
12
9
38
38
1.77
39438--39476
19
2.1
19
95
0
69
20
38
15
25
1.92
39375--39583
65
3.2
64
83
8
212
29
26
17
26
1.97
39424--39586
65
2.5
65
85
3
222
30
26
15
26
1.96
47824--47872
22
2.2
23
85
3
64
20
0
2
77
0.87
47824--47873
16
3.3
15
76
20
50
20
0
2
78
0.86
50480--50523
20
2.2
20
88
8
63
43
15
2
38
1.60
54192--54217
12
2.2
12
100
0
52
26
23
26
23
2.00
74534--74560
2
13.5
2
100
0
54
51
0
0
48
1.00
74099--74546
230
1.9
229
85
6
616
42
9
9
38
1.69
75777--75810
2
17.5
2
93
6
61
50
0
0
50
1.00
75841--75913
26
2.8
26
100
0
146
36
17
13
31
1.89
80078--80119
2
23.0
2
81
18
56
52
0
0
47
1.00
80078--80119
17
2.4
17
92
8
66
52
0
0
47
1.00
91370--91394
2
12.5
2
100
0
50
52
0
0
48
1.00
95055--95083
2
14.5
2
100
0
58
48
0
0
51
1.00
96244--96288
23
2.0
23
90
0
72
24
26
26
22
2.00
96256--96719
149
3.1
149
96
1
853
34
20
16
28
1.94
98116--98274
63
2.5
63
87
0
210
27
22
19
31
1.98
98242--98279
19
2.0
20
94
5
69
26
28
15
28
1.96
104410--104471
32
1.9
32
90
6
99
54
8
4
32
1.51
104729--104772
21
2.1
21
95
0
79
40
27
4
27
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
113139--113193
27
2.0
27
82
6
67
65
3
0
30
1.10
115794--115857
23
2.8
22
85
4
83
26
26
26
20
1.99
115873--116089
102
2.1
103
93
1
391
38
24
11
25
1.90
116541--116579
20
2.0
20
89
0
60
10
33
33
23
1.88
116607--116649
21
2.0
21
81
0
50
16
25
30
27
1.97
119182--119356
87
2.0
87
98
0
341
26
31
13
28
1.94
122780--122843
23
2.8
22
80
4
74
25
28
26
20
1.99
122859--123076
103
2.1
103
95
0
400
37
24
11
25
1.90
128555--128605
15
3.2
15
76
18
50
21
33
27
17
1.96
128543--128605
30
2.0
32
90
6
103
22
34
23
19
1.96
128543--128593
15
3.4
15
77
17
61
21
37
23
17
1.94

Tables:   1

The End!