Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005873.1 Hibiscus syriacus cultivar Beakdansim tig00013803_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95060

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16450--16506
24
2.4
23
85
2
69
59
21
8
10
1.57
16450--16520
23
3.0
23
85
2
79
57
21
11
9
1.62
16504--16572
24
2.9
24
84
4
95
53
14
17
14
1.73
16480--16564
23
3.7
23
82
3
98
54
17
16
11
1.71
16742--16793
14
3.7
14
92
0
86
59
11
11
17
1.60
16746--16796
24
2.1
24
82
7
59
58
11
11
17
1.62
18168--18205
15
2.7
15
84
8
53
21
21
21
36
1.95
22009--22059
2
25.5
2
100
0
102
49
0
0
50
1.00
23800--25300
750
2.0
750
93
1
2596
31
13
22
32
1.93
26296--26325
15
2.0
15
100
0
60
20
20
20
40
1.92
26298--26331
15
2.4
14
90
9
52
23
20
17
38
1.93
29965--29992
2
14.0
2
100
0
56
50
0
0
50
1.00
31987--32043
21
2.7
21
86
8
62
35
22
7
35
1.82
31994--32043
21
2.4
21
90
6
75
38
20
6
36
1.77
36066--36315
125
2.0
125
99
0
491
33
10
23
32
1.89
44539--44656
40
2.9
40
75
5
94
35
14
17
32
1.90
44563--45019
41
11.2
41
77
5
325
32
15
17
34
1.92
47552--47627
3
24.7
3
84
12
66
42
0
0
57
0.98
49225--49259
17
2.1
17
88
0
52
42
0
0
57
0.99
51302--51343
7
6.0
7
81
8
50
14
16
14
54
1.71
51302--51343
15
3.0
14
83
10
50
14
16
14
54
1.71
57604--57769
54
3.1
54
92
1
271
35
15
24
24
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
58138--58211
22
3.4
22
94
0
121
35
14
14
35
1.88
58611--58895
113
2.5
114
89
2
441
36
15
19
28
1.92
58821--59009
95
2.0
93
83
8
238
35
14
17
32
1.90
58731--59580
212
4.0
211
81
7
914
37
14
20
27
1.91
59144--59595
113
4.0
113
91
0
670
36
15
20
27
1.93
59857--59942
3
28.7
3
80
17
99
37
0
0
62
0.95
59857--59940
15
5.6
16
87
9
124
36
0
0
63
0.95
61556--61588
17
1.9
17
93
0
57
45
0
0
54
0.99
61561--61594
17
2.0
17
88
0
50
47
0
0
52
1.00
62668--63026
43
8.4
43
85
3
438
24
23
18
33
1.97
62668--63026
128
2.8
126
83
5
468
24
23
18
33
1.97
72665--72695
14
2.1
15
94
5
55
25
3
0
70
1.02
72933--72965
14
2.3
15
94
5
59
30
3
0
66
1.06
72565--73104
270
2.0
269
96
1
992
35
9
18
36
1.83
74174--74249
40
1.9
40
89
5
118
53
0
2
43
1.14
74246--74536
24
11.8
24
68
20
138
45
8
2
42
1.49
74372--74415
14
3.1
14
83
6
61
50
11
2
36
1.51
74372--74417
15
3.1
15
87
3
67
50
10
2
36
1.50
74329--74554
78
3.0
78
85
6
283
46
10
3
40
1.53
74242--74536
11
24.1
12
68
21
102
45
8
2
43
1.49
74935--75052
11
10.5
11
71
23
70
43
6
3
46
1.47
74916--75000
18
4.2
20
71
27
72
43
7
4
44
1.52
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
75009--75060
14
3.7
14
89
0
77
46
5
1
46
1.38
75284--75350
14
5.1
14
71
14
70
46
7
1
44
1.40
78278--78365
45
2.0
45
86
4
124
40
25
7
26
1.82
80015--80049
18
1.9
18
88
0
52
22
31
11
34
1.90
81075--81108
12
2.8
12
90
0
50
38
0
26
35
1.57
82421--82708
38
7.7
39
68
14
162
32
18
10
38
1.84
82428--83138
74
9.9
72
72
10
316
29
18
10
40
1.85
82460--82855
146
2.7
144
79
9
374
31
19
9
39
1.83
82464--83163
70
9.8
71
74
9
446
29
19
10
39
1.86
82425--83140
36
19.8
36
66
14
232
29
18
10
40
1.85
83578--83617
21
1.9
21
89
0
62
22
25
12
40
1.89

Tables:   1

The End!