genome.fa.s5874.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005874.1 Hibiscus syriacus cultivar Beakdansim tig00013804_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93558

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16119--16146	10	2.8	10	100	0	56	60	0	39	0	0.97
26580--26610	16	1.9	16	93	0	53	45	9	0	45	1.36
26577--26653	25	3.1	24	76	10	75	42	6	1	49	1.36
30208--30335	63	2.0	63	100	0	256	42	20	9	27	1.82
36056--36095	17	2.2	17	86	8	53	37	0	0	62	0.95
38810--38845	16	2.2	16	100	0	72	47	16	19	16	1.83
40506--40737	114	2.0	114	95	0	419	44	18	9	27	1.80
41000--41070	32	2.3	32	88	9	103	30	11	29	28	1.91
41000--41140	68	2.1	67	85	6	187	29	10	26	32	1.90
41124--41210	33	2.5	33	79	5	102	12	10	32	44	1.76
41880--41911	6	5.5	6	96	3	57	0	15	53	31	1.43
42147--42195	21	2.3	21	89	0	80	20	22	26	30	1.98
43612--43688	37	2.1	38	85	4	104	45	2	1	50	1.23
45223--45260	14	2.7	14	87	0	58	23	39	28	7	1.83
48561--48641	29	2.7	30	84	5	110	50	2	12	34	1.53
48641--48683	21	2.0	21	86	0	59	53	0	9	37	1.33
49967--50109	79	1.9	75	91	5	232	26	11	14	47	1.78
50071--50156	45	1.9	45	97	0	163	27	13	17	40	1.88
51720--51779	13	4.8	13	76	15	72	26	0	1	71	0.95
51720--51784	21	3.3	20	73	20	66	26	0	1	72	0.94
51722--51784	29	2.2	29	83	11	76	25	0	1	73	0.93
51724--51766	16	2.7	16	88	0	59	25	0	2	72	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52036--52095	13	4.8	13	78	15	72	71	1	0	26	0.95
52031--52075	21	2.1	21	91	0	72	75	0	0	24	0.80
52031--52091	16	4.0	16	77	12	56	72	1	0	26	0.94
52031--52083	21	2.5	21	87	0	70	73	1	0	24	0.93
52031--52095	21	3.3	20	73	20	66	72	1	0	26	0.94
54987--55079	24	3.7	24	77	13	82	52	0	4	43	1.21
57962--58012	18	2.7	19	87	6	77	27	19	31	21	1.97
59724--59751	2	14.0	2	100	0	56	50	0	0	50	1.00
60732--60783	21	2.4	22	93	3	88	26	23	26	23	2.00
60804--60860	22	2.6	22	91	0	87	21	19	19	40	1.92
61177--61217	7	5.9	7	100	0	82	70	14	0	14	1.16
67463--67505	22	2.0	22	86	13	63	18	4	4	72	1.20
70044--70102	29	2.0	29	90	6	93	32	18	8	40	1.81
71904--72012	51	2.1	51	81	3	121	41	25	8	24	1.83
75853--75918	27	2.4	28	85	7	91	40	4	4	50	1.43
79636--79676	20	2.0	20	100	0	82	58	4	4	31	1.40
84835--84875	3	13.3	3	89	5	64	63	0	2	34	1.08
84837--84874	19	2.0	19	94	0	67	60	0	2	36	1.11
86538--86564	14	1.9	14	100	0	54	22	37	29	11	1.89
86532--86599	24	3.0	22	72	23	70	26	33	29	10	1.89
86582--86645	23	2.8	23	90	0	92	28	28	35	7	1.85
86713--86795	33	2.6	33	92	3	143	7	37	25	30	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87506--87550	21	2.1	21	87	0	63	31	28	24	15	1.96
88355--88447	31	3.0	31	85	6	127	20	20	23	35	1.96
91308--91352	21	2.1	21	87	0	63	31	28	24	15	1.96
92155--92279	31	4.0	31	90	2	189	20	19	23	37	1.94

Tables:   1

The End!