Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01005876.1 Hibiscus syriacus cultivar Beakdansim tig00013808_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 777889
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 1 of 5
Found at i:7227 original size:157 final size:157
Alignment explanation
Indices: 6981--7297 Score: 616
Period size: 157 Copynumber: 2.0 Consensus size: 157
6971 ACCGGATGTA
6981 GCTGAGATGAATTGGCGTGCCCCAAATTGCCTCAGTACCATCAGTGGCGCATAACCTACTCCACC
1 GCTGAGATGAATTGGCGTGCCCCAAATTGCCTCAGTACCATCAGTGGCGCATAACCTACTCCACC
*
7046 CCATAACCCTAATAGGGTTACCCAATCGGAATCCCCGCATTTGTACAACACATCCACAAAAGCTA
66 CCATAACCCTAATAGGGTTACCCAATCGGAATCCCCGAATTTGTACAACACATCCACAAAAGCTA
7111 ACCAGGGGACACGCCACACTATATCAT
131 ACCAGGGGACACGCCACACTATATCAT
*
7138 GCTGGGATGAATTGGCGTGCCCCAAATTGCCTCAGTACCATCAGTGGCGCATAACCTACTCCACC
1 GCTGAGATGAATTGGCGTGCCCCAAATTGCCTCAGTACCATCAGTGGCGCATAACCTACTCCACC
7203 CCATAACCCTAATAGGGTTACCCAATCGGAATCCCCGAATTTGTACAACACATCCACAAAAGCTA
66 CCATAACCCTAATAGGGTTACCCAATCGGAATCCCCGAATTTGTACAACACATCCACAAAAGCTA
7268 ACCAGGGGACACGCCACACTATATCAT
131 ACCAGGGGACACGCCACACTATATCAT
7295 GCT
1 GCT
7298 CCTGTAAATT
Statistics
Matches: 158, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
157 158 1.00
ACGTcount: A:0.30, C:0.32, G:0.18, T:0.20
Consensus pattern (157 bp):
GCTGAGATGAATTGGCGTGCCCCAAATTGCCTCAGTACCATCAGTGGCGCATAACCTACTCCACC
CCATAACCCTAATAGGGTTACCCAATCGGAATCCCCGAATTTGTACAACACATCCACAAAAGCTA
ACCAGGGGACACGCCACACTATATCAT
Found at i:11916 original size:2 final size:2
Alignment explanation
Indices: 11909--12058 Score: 207
Period size: 2 Copynumber: 75.5 Consensus size: 2
11899 TTATATGCAC
11909 AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
11950 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* * ** *
11992 AT AT AT AT AT AT AT AT AT A- AT TT CAT AT AC CC AT AA AT ACT -T
1 AT AT AT AT AT AT AT AT AT AT AT AT -AT AT AT AT AT AT AT A-T AT
*
12034 TT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
12059 CATGACTACA
Statistics
Matches: 134, Mismatches: 9, Indels: 10
0.88 0.06 0.07
Matches are distributed among these distances:
1 3 0.02
2 129 0.96
3 2 0.01
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:18936 original size:22 final size:23
Alignment explanation
Indices: 18908--18966 Score: 84
Period size: 22 Copynumber: 2.6 Consensus size: 23
18898 CTATTTTATA
*
18908 TATATTAACTTAACAATAT-TTT
1 TATATTAACTTAAAAATATATTT
*
18930 TATATTAAATTAAAAATATATTT
1 TATATTAACTTAAAAATATATTT
18953 TATTATTAACTTAA
1 TA-TATTAACTTAA
18967 TTTAAAAATA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
22 17 0.53
23 5 0.16
24 10 0.31
ACGTcount: A:0.46, C:0.05, G:0.00, T:0.49
Consensus pattern (23 bp):
TATATTAACTTAAAAATATATTT
Found at i:19352 original size:45 final size:46
Alignment explanation
Indices: 19299--19401 Score: 136
Period size: 46 Copynumber: 2.3 Consensus size: 46
19289 ATTGGATTGT
* *
19299 CAAAAGTAAAATCAAATGACTAATT-ATTTTTAATTATTGTGTTGC
1 CAAAAGTAAAATCAAATGACTAATTCATTTTTAATCATTGAGTTGC
* * * *
19344 TAAAAGTAAAATCAAATTATTAATTCCTTTTTAATCATTGAGTTGC
1 CAAAAGTAAAATCAAATGACTAATTCATTTTTAATCATTGAGTTGC
*
19390 CAAAAATAAAAT
1 CAAAAGTAAAAT
19402 TAACTTATTA
Statistics
Matches: 49, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
45 22 0.45
46 27 0.55
ACGTcount: A:0.44, C:0.10, G:0.09, T:0.38
Consensus pattern (46 bp):
CAAAAGTAAAATCAAATGACTAATTCATTTTTAATCATTGAGTTGC
Found at i:19484 original size:45 final size:44
Alignment explanation
Indices: 19298--19501 Score: 140
Period size: 45 Copynumber: 4.5 Consensus size: 44
19288 TATTGGATTG
* * * * ** *
19298 TCAAAAGTAAAATCAAATGACTAATTATTTTTAATTATTGTGTT
1 TCAAAAATAAAATCAAATAATTAGTTCCTTTTAATTATTGAGTT
* * * * *
19342 GCTAAAAGTAAAATCAAATTATTAATTCCTTTTTAATCATTGAGTT
1 TC-AAAAATAAAATCAAATAATTAGTTCC-TTTTAATTATTGAGTT
* * * * ** *
19388 GCCAAAAATAAAATTAACTTATTAGTTTATTTTGATTATTGCA-TT
1 -TCAAAAATAAAATCAAATAATTAGTTCCTTTTAATTATTG-AGTT
* * *
19433 TCCAAAAATAAAATTAAAGAATTAGTTCCTTTTAATTATTGGGTT
1 T-CAAAAATAAAATCAAATAATTAGTTCCTTTTAATTATTGAGTT
*
19478 ATCAAAATTAAAATCAAATAATTA
1 -TCAAAAATAAAATCAAATAATTA
19502 ATTTTTTTAG
Statistics
Matches: 126, Mismatches: 27, Indels: 13
0.76 0.16 0.08
Matches are distributed among these distances:
44 1 0.01
45 88 0.70
46 36 0.29
47 1 0.01
ACGTcount: A:0.42, C:0.09, G:0.08, T:0.41
Consensus pattern (44 bp):
TCAAAAATAAAATCAAATAATTAGTTCCTTTTAATTATTGAGTT
Found at i:20419 original size:20 final size:20
Alignment explanation
Indices: 20396--20506 Score: 108
Period size: 20 Copynumber: 5.8 Consensus size: 20
20386 ATTCGCGTTG
*
20396 CATTTCGCGTTGCGATTTTT
1 CATTTCGCGTTGCGATTTTC
20416 CATTTCGCGTTGCGA---T-
1 CATTTCGCGTTGCGATTTTC
* *
20432 -A-ATCGCGTCGCGATTTTC
1 CATTTCGCGTTGCGATTTTC
* *
20450 CAGTTCGCGTCGCGATTTTC
1 CATTTCGCGTTGCGATTTTC
*
20470 CATTTCGCTTTGCGATTTTC
1 CATTTCGCGTTGCGATTTTC
*
20490 CATTTGGGCGTTGCGAT
1 CATTT-CGCGTTGCGAT
20507 AGTCTACGTT
Statistics
Matches: 76, Mismatches: 8, Indels: 13
0.78 0.08 0.13
Matches are distributed among these distances:
14 10 0.13
15 1 0.01
17 2 0.03
19 1 0.01
20 53 0.70
21 9 0.12
ACGTcount: A:0.12, C:0.24, G:0.23, T:0.41
Consensus pattern (20 bp):
CATTTCGCGTTGCGATTTTC
Found at i:20445 original size:34 final size:33
Alignment explanation
Indices: 20387--20465 Score: 97
Period size: 34 Copynumber: 2.4 Consensus size: 33
20377 CTATCGCAAA
* * * *
20387 TTCGCGTTGC-ATTTCGCGTTGCGATTTTTCAT
1 TTCGCGTTGCGATATCGCGTCGCGATTTTCCAG
20419 TTCGCGTTGCGATAATCGCGTCGCGATTTTCCAG
1 TTCGCGTTGCGAT-ATCGCGTCGCGATTTTCCAG
*
20453 TTCGCGTCGCGAT
1 TTCGCGTTGCGAT
20466 TTTCCATTTC
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
32 10 0.25
33 2 0.05
34 28 0.70
ACGTcount: A:0.11, C:0.25, G:0.25, T:0.38
Consensus pattern (33 bp):
TTCGCGTTGCGATATCGCGTCGCGATTTTCCAG
Found at i:20690 original size:5 final size:6
Alignment explanation
Indices: 20608--20687 Score: 101
Period size: 6 Copynumber: 13.7 Consensus size: 6
20598 AGACACGTAT
* * * * *
20608 GACCAC GACCCC GACCAC GACCAC GACCAC GACCCC AAACAC GAACAC
1 GACCAC GACCAC GACCAC GACCAC GACCAC GACCAC GACCAC GACCAC
20656 GACCAC GACCAC GACCAC GACC-C GACC-C GACC
1 GACCAC GACCAC GACCAC GACCAC GACCAC GACC
20688 CGAGACGAGA
Statistics
Matches: 66, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
5 10 0.15
6 56 0.85
ACGTcount: A:0.33, C:0.51, G:0.16, T:0.00
Consensus pattern (6 bp):
GACCAC
Found at i:21198 original size:6 final size:6
Alignment explanation
Indices: 21182--21214 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
21172 GTCCGTCTCG
21182 GGTCG- GGTCGT GGTCGT GGTCGT GGTCGT GGTC
1 GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTC
21215 ATACGTGTCT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 5 0.19
6 22 0.81
ACGTcount: A:0.00, C:0.18, G:0.52, T:0.30
Consensus pattern (6 bp):
GGTCGT
Found at i:21328 original size:20 final size:20
Alignment explanation
Indices: 21305--21377 Score: 74
Period size: 20 Copynumber: 3.6 Consensus size: 20
21295 ACTGTAGACT
21305 ATCGCAACGCGAAATAGAAA
1 ATCGCAACGCGAAATAGAAA
* ** ** *
21325 ATCGCAACGTGATTTTCAACT
1 ATCGCAACGCGAAATAGAA-A
*
21346 ATCGCAACGCGAAATGGAAA
1 ATCGCAACGCGAAATAGAAA
21366 ATCGCAACGCGA
1 ATCGCAACGCGA
21378 TTTTCAACTA
Statistics
Matches: 40, Mismatches: 12, Indels: 2
0.74 0.22 0.04
Matches are distributed among these distances:
20 26 0.65
21 14 0.35
ACGTcount: A:0.40, C:0.23, G:0.21, T:0.16
Consensus pattern (20 bp):
ATCGCAACGCGAAATAGAAA
Found at i:21350 original size:41 final size:41
Alignment explanation
Indices: 21302--21399 Score: 169
Period size: 41 Copynumber: 2.4 Consensus size: 41
21292 ACAACTGTAG
*
21302 ACTATCGCAACGCGAAATAGAAAATCGCAACGTGATTTTCA
1 ACTATCGCAACGCGAAATAGAAAATCGCAACGCGATTTTCA
*
21343 ACTATCGCAACGCGAAATGGAAAATCGCAACGCGATTTTCA
1 ACTATCGCAACGCGAAATAGAAAATCGCAACGCGATTTTCA
*
21384 ACTACCGCAACGCGAA
1 ACTATCGCAACGCGAA
21400 TTTGCGATAG
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 54 1.00
ACGTcount: A:0.38, C:0.26, G:0.18, T:0.18
Consensus pattern (41 bp):
ACTATCGCAACGCGAAATAGAAAATCGCAACGCGATTTTCA
Found at i:21351 original size:21 final size:21
Alignment explanation
Indices: 21325--21398 Score: 78
Period size: 21 Copynumber: 3.6 Consensus size: 21
21315 GAAATAGAAA
*
21325 ATCGCAACGTGATTTTCAACT
1 ATCGCAACGCGATTTTCAACT
** ** *
21346 ATCGCAACGCGAAATGGAA-A
1 ATCGCAACGCGATTTTCAACT
21366 ATCGCAACGCGATTTTCAACT
1 ATCGCAACGCGATTTTCAACT
*
21387 ACCGCAACGCGA
1 ATCGCAACGCGA
21399 ATTTGCGATA
Statistics
Matches: 40, Mismatches: 12, Indels: 2
0.74 0.22 0.04
Matches are distributed among these distances:
20 15 0.38
21 25 0.62
ACGTcount: A:0.34, C:0.27, G:0.19, T:0.20
Consensus pattern (21 bp):
ATCGCAACGCGATTTTCAACT
Found at i:24855 original size:31 final size:31
Alignment explanation
Indices: 24820--24891 Score: 99
Period size: 31 Copynumber: 2.3 Consensus size: 31
24810 AAAACATAAT
24820 ATATGGTCACTTTTGTTTTTATTTAATTAAG
1 ATATGGTCACTTTTGTTTTTATTTAATTAAG
* * *
24851 ATATGATAACTTTTGTTTTTATTTAGTTAAG
1 ATATGGTCACTTTTGTTTTTATTTAATTAAG
* *
24882 GTGTGGTCAC
1 ATATGGTCAC
24892 CACAAGTTAA
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.25, C:0.07, G:0.17, T:0.51
Consensus pattern (31 bp):
ATATGGTCACTTTTGTTTTTATTTAATTAAG
Found at i:25607 original size:29 final size:30
Alignment explanation
Indices: 25571--25635 Score: 80
Period size: 29 Copynumber: 2.2 Consensus size: 30
25561 ATAGTATTCT
* *
25571 TAATATTTTTATTTATAAAATT-ATAGAAA
1 TAATATTTTTAATAATAAAATTGATAGAAA
* *
25600 TAATA-TTTTAATAATAATATTGATATAAA
1 TAATATTTTTAATAATAAAATTGATAGAAA
25629 TAATATT
1 TAATATT
25636 AAATAAATTA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
28 13 0.43
29 16 0.53
30 1 0.03
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.48
Consensus pattern (30 bp):
TAATATTTTTAATAATAAAATTGATAGAAA
Found at i:25651 original size:14 final size:14
Alignment explanation
Indices: 25597--25643 Score: 51
Period size: 14 Copynumber: 3.3 Consensus size: 14
25587 AAAATTATAG
*
25597 AAATAATATTTTAAT
1 AAATAATA-TTAAAT
*
25612 -AATAATATTGATAT
1 AAATAATATT-AAAT
25626 AAATAATATTAAAT
1 AAATAATATTAAAT
25640 AAAT
1 AAAT
25644 TATTTTAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
13 2 0.07
14 16 0.59
15 9 0.33
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.40
Consensus pattern (14 bp):
AAATAATATTAAAT
Found at i:27960 original size:12 final size:11
Alignment explanation
Indices: 27945--27988 Score: 52
Period size: 12 Copynumber: 3.8 Consensus size: 11
27935 TATAAATACC
27945 ACACTCAATATA
1 ACACTCAA-ATA
**
27957 ACACTCAAACC
1 ACACTCAAATA
27968 ACACTCAACATA
1 ACACTCAA-ATA
27980 ACACTCAAA
1 ACACTCAAA
27989 CCACACTTAA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
11 10 0.37
12 17 0.63
ACGTcount: A:0.50, C:0.34, G:0.00, T:0.16
Consensus pattern (11 bp):
ACACTCAAATA
Found at i:27968 original size:23 final size:23
Alignment explanation
Indices: 27942--27995 Score: 99
Period size: 23 Copynumber: 2.3 Consensus size: 23
27932 TTCTATAAAT
*
27942 ACCACACTCAATATAACACTCAA
1 ACCACACTCAACATAACACTCAA
27965 ACCACACTCAACATAACACTCAA
1 ACCACACTCAACATAACACTCAA
27988 ACCACACT
1 ACCACACT
27996 TAAATCTCAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.46, C:0.39, G:0.00, T:0.15
Consensus pattern (23 bp):
ACCACACTCAACATAACACTCAA
Found at i:28105 original size:21 final size:20
Alignment explanation
Indices: 28073--28113 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
28063 TATATTATAA
28073 TTATTTAATAATTTATTATT
1 TTATTTAATAATTTATTATT
* *
28093 TTATTATACTAATTTTTTATT
1 TTATT-TAATAATTTATTATT
28114 ACTTTTTTCA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (20 bp):
TTATTTAATAATTTATTATT
Found at i:35458 original size:17 final size:17
Alignment explanation
Indices: 35436--35469 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
35426 ATCTAAAGCG
35436 AGTGAAGAAGACTTGCC
1 AGTGAAGAAGACTTGCC
35453 AGTGAAGAAGACTTGCC
1 AGTGAAGAAGACTTGCC
35470 TGGAATGGCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.18, G:0.29, T:0.18
Consensus pattern (17 bp):
AGTGAAGAAGACTTGCC
Found at i:45662 original size:21 final size:21
Alignment explanation
Indices: 45611--45663 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
45601 ATTCTGACTA
45611 TCGCATTGCGATTTCCCAAAT
1 TCGCATTGCGATTTCCCAAAT
* * * *
45632 CCGCGTTGCGATTTTCCTAAT
1 TCGCATTGCGATTTCCCAAAT
*
45653 TCGCAATGCGA
1 TCGCATTGCGA
45664 ATACGTAAAT
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.21, C:0.28, G:0.19, T:0.32
Consensus pattern (21 bp):
TCGCATTGCGATTTCCCAAAT
Found at i:45678 original size:20 final size:20
Alignment explanation
Indices: 45653--45760 Score: 121
Period size: 20 Copynumber: 5.4 Consensus size: 20
45643 TTTTCCTAAT
*
45653 TCGCAATGCGAATACGTAAA
1 TCGCAACGCGAATACGTAAA
*
45673 TCGCAACGCGATTACGTAAA
1 TCGCAACGCGAATACGTAAA
*
45693 TCGCAACAC--ATATCTGTAAA
1 TCGCAACGCGAATA-C-GTAAA
*
45713 TCGCAACGAGAATACGTAAA
1 TCGCAACGCGAATACGTAAA
* * *
45733 TCGCAATGCGTATCCGTAAA
1 TCGCAACGCGAATACGTAAA
45753 TCGCAACG
1 TCGCAACG
45761 ACCATACGTA
Statistics
Matches: 73, Mismatches: 11, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
18 2 0.03
19 1 0.01
20 66 0.90
21 1 0.01
22 3 0.04
ACGTcount: A:0.37, C:0.24, G:0.19, T:0.20
Consensus pattern (20 bp):
TCGCAACGCGAATACGTAAA
Found at i:45712 original size:40 final size:39
Alignment explanation
Indices: 45667--45777 Score: 132
Period size: 40 Copynumber: 2.7 Consensus size: 39
45657 AATGCGAATA
45667 CGTAAATCGCAACGCGATTACGTAAATCGCAACACATATC
1 CGTAAATCGCAACGCGA-TACGTAAATCGCAACACATATC
* * ** *
45707 TGTAAATCGCAACGAGAATACGTAAATCGCAATGCGTATC
1 CGTAAATCGCAACGCG-ATACGTAAATCGCAACACATATC
*
45747 CGTAAATCGCAACGACCATACGTAAAATCGC
1 CGTAAATCGCAACG-CGATACGT-AAATCGC
45778 CATTGGTGCT
Statistics
Matches: 60, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
40 52 0.87
41 8 0.13
ACGTcount: A:0.38, C:0.25, G:0.17, T:0.20
Consensus pattern (39 bp):
CGTAAATCGCAACGCGATACGTAAATCGCAACACATATC
Found at i:45770 original size:20 final size:20
Alignment explanation
Indices: 45664--45777 Score: 101
Period size: 20 Copynumber: 5.7 Consensus size: 20
45654 CGCAATGCGA
*
45664 ATACGTAAATCGCAACG-CG
1 ATACGTAAATCGCAACGACC
45683 ATTACGTAAATCGCAAC-A-C
1 A-TACGTAAATCGCAACGACC
**
45702 ATATCTGTAAATCGCAACGAGA
1 ATA-C-GTAAATCGCAACGACC
* *
45724 ATACGTAAATCGCAATG-CGT
1 ATACGTAAATCGCAACGAC-C
*
45744 ATCCGTAAATCGCAACGACC
1 ATACGTAAATCGCAACGACC
45764 ATACGTAAAATCGC
1 ATACGT-AAATCGC
45778 CATTGGTGCT
Statistics
Matches: 77, Mismatches: 9, Indels: 16
0.75 0.09 0.16
Matches are distributed among these distances:
18 2 0.03
19 3 0.04
20 59 0.77
21 10 0.13
22 3 0.04
ACGTcount: A:0.39, C:0.25, G:0.17, T:0.20
Consensus pattern (20 bp):
ATACGTAAATCGCAACGACC
Found at i:45772 original size:60 final size:61
Alignment explanation
Indices: 45653--45777 Score: 159
Period size: 60 Copynumber: 2.1 Consensus size: 61
45643 TTTTCCTAAT
* *
45653 TCGCAATGCGAATACGTAAATCGCAACGCGATTACGTAAATCGCAACACATATCTGT-AAA
1 TCGCAACGAGAATACGTAAATCGCAACGCGATTACGTAAATCGCAACACATATCTGTAAAA
* *
45713 TCGCAACGAGAATACGTAAATCGCAATGCG-TATCCGTAAATCGCAACGACCATA-C-GTAAAA
1 TCGCAACGAGAATACGTAAATCGCAACGCGAT-TACGTAAATCGCAAC-A-CATATCTGTAAAA
45774 TCGC
1 TCGC
45778 CATTGGTGCT
Statistics
Matches: 57, Mismatches: 4, Indels: 7
0.84 0.06 0.10
Matches are distributed among these distances:
59 1 0.02
60 43 0.75
61 9 0.16
62 4 0.07
ACGTcount: A:0.38, C:0.25, G:0.18, T:0.20
Consensus pattern (61 bp):
TCGCAACGAGAATACGTAAATCGCAACGCGATTACGTAAATCGCAACACATATCTGTAAAA
Found at i:47514 original size:19 final size:19
Alignment explanation
Indices: 47490--47588 Score: 136
Period size: 19 Copynumber: 5.4 Consensus size: 19
47480 GTAACTAGAG
47490 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
47509 AATCGCAATGCGAAAATGAC
1 AATCGCAATGCG-AAATGAA
*
47529 TATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
47548 AATCGCAA--CGAAA-G--
1 AATCGCAATGCGAAATGAA
47562 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
47581 AATCGCAA
1 AATCGCAA
47589 CGCAAATTTA
Statistics
Matches: 70, Mismatches: 4, Indels: 12
0.81 0.05 0.14
Matches are distributed among these distances:
14 8 0.11
16 6 0.09
17 6 0.09
19 33 0.47
20 17 0.24
ACGTcount: A:0.46, C:0.18, G:0.20, T:0.15
Consensus pattern (19 bp):
AATCGCAATGCGAAATGAA
Found at i:47545 original size:39 final size:33
Alignment explanation
Indices: 47444--47590 Score: 186
Period size: 33 Copynumber: 4.3 Consensus size: 33
47434 GGAAACTACT
* * *
47444 ATCGCAACGAGAGAATCGCATTACGAAATGAAA
1 ATCGCAACGAAAGAATCGCAATGCGAAATGAAA
* * *
47477 ATCGTAACTAGAGAATCGCAATGCGAAATGAAA
1 ATCGCAACGAAAGAATCGCAATGCGAAATGAAA
47510 ATCGCAATGCGAAAATGACTATCGCAATGCGAAATGAAA
1 ATCGCAA--CG-AAA-GA--ATCGCAATGCGAAATGAAA
47549 ATCGCAACGAAAGAATCGCAATGCGAAATGAAA
1 ATCGCAACGAAAGAATCGCAATGCGAAATGAAA
47582 ATCGCAACG
1 ATCGCAACG
47591 CAAATTTAGT
Statistics
Matches: 101, Mismatches: 7, Indels: 12
0.84 0.06 0.10
Matches are distributed among these distances:
33 63 0.62
35 3 0.03
36 5 0.05
37 4 0.04
39 26 0.26
ACGTcount: A:0.45, C:0.18, G:0.21, T:0.16
Consensus pattern (33 bp):
ATCGCAACGAAAGAATCGCAATGCGAAATGAAA
Found at i:47617 original size:19 final size:19
Alignment explanation
Indices: 47595--47633 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
47585 GCAACGCAAA
*
47595 TTTAGTTTCGCGTTGCGAT
1 TTTAGTTTCGCATTGCGAT
47614 TTTAGTTTCGCATTGCGAT
1 TTTAGTTTCGCATTGCGAT
47633 T
1 T
47634 CTCTCGTTGC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.13, C:0.15, G:0.23, T:0.49
Consensus pattern (19 bp):
TTTAGTTTCGCATTGCGAT
Found at i:47664 original size:19 final size:19
Alignment explanation
Indices: 47600--47665 Score: 63
Period size: 19 Copynumber: 3.7 Consensus size: 19
47590 GCAAATTTAG
*
47600 TTTCGCGTTGCGATTTT-A
1 TTTCGCATTGCGATTTTCA
47618 GTTTCGCATTGCGA--TTC-
1 -TTTCGCATTGCGATTTTCA
*
47635 TCTCG--TTGCGATTTTCA
1 TTTCGCATTGCGATTTTCA
47652 TTTCGCATTGCGAT
1 TTTCGCATTGCGAT
47666 AGTCATTTTT
Statistics
Matches: 38, Mismatches: 3, Indels: 12
0.72 0.06 0.23
Matches are distributed among these distances:
14 6 0.16
16 7 0.18
17 6 0.16
19 19 0.50
ACGTcount: A:0.12, C:0.21, G:0.21, T:0.45
Consensus pattern (19 bp):
TTTCGCATTGCGATTTTCA
Found at i:47782 original size:14 final size:14
Alignment explanation
Indices: 47763--47799 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
47753 CATCAATTAA
47763 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
47777 ACAAATCATCTTTT
1 ACAAATCAACTTTT
47791 ACAAATCAA
1 ACAAATCAA
47800 TTAAACAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.32
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:49130 original size:21 final size:21
Alignment explanation
Indices: 49064--49130 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
49054 GTGAATCGGG
*
49064 CTCTTGAATGGTGGGA-GGGA
1 CTCTTGAACGGTGGGAGGGGA
* * ** * *
49084 CCTCTTCAACGATGACAGTGGC
1 -CTCTTGAACGGTGGGAGGGGA
49106 CTCTTGAACGGTGGGAGGGGA
1 CTCTTGAACGGTGGGAGGGGA
49127 CTCT
1 CTCT
49131 CGAGGAATGA
Statistics
Matches: 32, Mismatches: 13, Indels: 2
0.68 0.28 0.04
Matches are distributed among these distances:
21 30 0.94
22 2 0.06
ACGTcount: A:0.19, C:0.21, G:0.36, T:0.24
Consensus pattern (21 bp):
CTCTTGAACGGTGGGAGGGGA
Found at i:49149 original size:42 final size:41
Alignment explanation
Indices: 49064--49186 Score: 113
Period size: 42 Copynumber: 2.9 Consensus size: 41
49054 GTGAATCGGG
* * * *
49064 CTCTTGAATGGTGGGA-GGGACCTCTTCAACGATGACAGTGGC
1 CTCTTGAACGGTGGGAGGGGA-CTC-TCGAGGATGACAGGGGC
*
49106 CTCTTGAACGGTGGGAGGGGACTCTCGAGGAATGAGAGGGGC
1 CTCTTGAACGGTGGGAGGGGACTCTCGAGG-ATGACAGGGGC
* * * * *
49148 CTCTTCAACGATAGGAGTGGACTCTTGAGGGATGACAGG
1 CTCTTGAACGGTGGGAGGGGACTCTCGA-GGATGACAGG
49187 CGAGTCGGGC
Statistics
Matches: 67, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
41 4 0.06
42 57 0.85
43 6 0.09
ACGTcount: A:0.23, C:0.19, G:0.37, T:0.21
Consensus pattern (41 bp):
CTCTTGAACGGTGGGAGGGGACTCTCGAGGATGACAGGGGC
Found at i:49675 original size:19 final size:19
Alignment explanation
Indices: 49607--49677 Score: 75
Period size: 19 Copynumber: 4.1 Consensus size: 19
49597 AAAAATGACT
49607 ATCGCAACGCGAAATG--A
1 ATCGCAACGCGAAATGAAA
*
49624 ATCGCAA--C--AA-GAGA
1 ATCGCAACGCGAAATGAAA
*
49638 ATCGTAACGCGAAATGAAA
1 ATCGCAACGCGAAATGAAA
49657 ATCGCAACGCGAAATGAAA
1 ATCGCAACGCGAAATGAAA
49676 AT
1 AT
49678 ATCAACAAGA
Statistics
Matches: 44, Mismatches: 3, Indels: 12
0.75 0.05 0.20
Matches are distributed among these distances:
12 1 0.02
13 2 0.05
14 7 0.16
15 1 0.02
16 1 0.02
17 7 0.16
18 2 0.05
19 23 0.52
ACGTcount: A:0.46, C:0.20, G:0.21, T:0.13
Consensus pattern (19 bp):
ATCGCAACGCGAAATGAAA
Found at i:49683 original size:19 final size:19
Alignment explanation
Indices: 49643--49683 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
49633 AGAGAATCGT
*
49643 AACGCGAAATGAAAATCGC
1 AACGCGAAATGAAAATAGC
*
49662 AACGCGAAATGAAAATATC
1 AACGCGAAATGAAAATAGC
49681 AAC
1 AAC
49684 AAGACAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.51, C:0.20, G:0.17, T:0.12
Consensus pattern (19 bp):
AACGCGAAATGAAAATAGC
Found at i:50098 original size:94 final size:93
Alignment explanation
Indices: 49820--50195 Score: 566
Period size: 94 Copynumber: 4.1 Consensus size: 93
49810 ATGGATTGCA
* * *
49820 TTAC-TTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCAGAGTATTAAAGAATACACAGT
1 TTACTTTCAACCAAAAGACAAAAAAAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAGT
*
49884 TTAGTAGAATTGGCAGCAACC-ATACAAAT
66 TTAGCAGAATT-GCAGCAACCGA-ACAAAT
* *
49913 TTACTTTCAACCAAAAGACAAAACAAAGACAAATATTAAC-TCACA--GTTAAAGAATACACAGT
1 TTACTTTCAACCAAAAGACAAAAAAAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAGT
49975 TTAGCAGAATTGACAGCAACCGAACAAAT
66 TTAGCAGAATTG-CAGCAACCGAACAAAT
50004 TTACTTTCAACCAAAAGACAAAAAAAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAGT
1 TTACTTTCAACCAAAAGACAAAAAAAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAGT
*
50069 TTAGCAGAATTGCCAGCAACCGAATAAAT
66 TTAGCAGAATTG-CAGCAACCGAACAAAT
*
50098 TTAC-TTCAACCAAAAGACAAAACAAAAGACAAATACTAACTTCACAGTGTTAAAGAATAAACAG
1 TTACTTTCAACCAAAAGACAAAA-AAAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAG
* * *
50162 TTTAGTAGTATTGCAGCAACCGAATAAAT
65 TTTAGCAGAATTGCAGCAACCGAACAAAT
50191 TTACT
1 TTACT
50196 AAGCAATCTA
Statistics
Matches: 264, Mismatches: 11, Indels: 15
0.91 0.04 0.05
Matches are distributed among these distances:
90 1 0.00
91 78 0.30
92 6 0.02
93 46 0.17
94 133 0.50
ACGTcount: A:0.48, C:0.19, G:0.11, T:0.22
Consensus pattern (93 bp):
TTACTTTCAACCAAAAGACAAAAAAAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAGT
TTAGCAGAATTGCAGCAACCGAACAAAT
Found at i:51824 original size:20 final size:21
Alignment explanation
Indices: 51792--51853 Score: 83
Period size: 20 Copynumber: 3.0 Consensus size: 21
51782 TCTTTTGGTT
**
51792 GAAATGAAAATCGCAACGAGA
1 GAAATGACTATCGCAACGAGA
*
51813 G-AATGACTATCGCAACGCG-
1 GAAATGACTATCGCAACGAGA
51832 GAAATGACTATCGCAACGAGA
1 GAAATGACTATCGCAACGAGA
51853 G
1 G
51854 GATCGCAACG
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
19 1 0.03
20 32 0.91
21 2 0.06
ACGTcount: A:0.42, C:0.19, G:0.26, T:0.13
Consensus pattern (21 bp):
GAAATGACTATCGCAACGAGA
Found at i:51836 original size:40 final size:37
Alignment explanation
Indices: 51792--51891 Score: 111
Period size: 40 Copynumber: 2.8 Consensus size: 37
51782 TCTTTTGGTT
51792 GAAATGAAAATCGCAACGAGAGAATGACTATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATGA--ATCGCAACGC
**
51831 GGAAATGACTATCGCAACGAGAG---G-ATCGCAACGC
1 -GAAATGAAAATCGCAACGAGAGAATGAATCGCAACGC
*
51865 GAAATGAAAATCGCAACGCGA-AATGAA
1 GAAATGAAAATCGCAACGAGAGAATGAA
51892 AATCGCAATG
Statistics
Matches: 51, Mismatches: 5, Indels: 12
0.75 0.07 0.18
Matches are distributed among these distances:
33 18 0.35
34 10 0.20
35 1 0.02
36 1 0.02
37 1 0.02
40 20 0.39
ACGTcount: A:0.43, C:0.20, G:0.25, T:0.12
Consensus pattern (37 bp):
GAAATGAAAATCGCAACGAGAGAATGAATCGCAACGC
Found at i:51879 original size:19 final size:19
Alignment explanation
Indices: 51792--51904 Score: 101
Period size: 19 Copynumber: 6.1 Consensus size: 19
51782 TCTTTTGGTT
*
51792 GAAATGAAAATCGCAACGA
1 GAAATGAAAATCGCAACGC
**
51811 GAGAATGACTATCGCAACGC
1 GA-AATGAAAATCGCAACGC
**
51831 GGAAATGACTATCGCAA--C
1 -GAAATGAAAATCGCAACGC
**
51849 G--A-GAGGATCGCAACGC
1 GAAATGAAAATCGCAACGC
51865 GAAATGAAAATCGCAACGC
1 GAAATGAAAATCGCAACGC
*
51884 GAAATGAAAATCGCAATGC
1 GAAATGAAAATCGCAACGC
51903 GA
1 GA
51905 TTTTGGTTTC
Statistics
Matches: 79, Mismatches: 8, Indels: 14
0.78 0.08 0.14
Matches are distributed among these distances:
14 9 0.11
15 1 0.01
16 2 0.03
17 1 0.01
18 2 0.03
19 34 0.43
20 28 0.35
21 2 0.03
ACGTcount: A:0.42, C:0.20, G:0.25, T:0.12
Consensus pattern (19 bp):
GAAATGAAAATCGCAACGC
Found at i:51948 original size:33 final size:33
Alignment explanation
Indices: 51900--51992 Score: 123
Period size: 33 Copynumber: 2.8 Consensus size: 33
51890 AAAATCGCAA
**
51900 TGCGATTTTGGTTTCGCGTTGCGATTATCTCGT
1 TGCGATTTTCATTTCGCGTTGCGATTATCTCGT
*
51933 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCGTTGCGATTATCTCGT
** *
51966 TGCGATAGTCATTTTCGTGTTGCGATT
1 TGCGATTTTCA-TTTCGCGTTGCGATT
51993 TTCATTTCAT
Statistics
Matches: 53, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
33 39 0.74
34 14 0.26
ACGTcount: A:0.11, C:0.19, G:0.25, T:0.45
Consensus pattern (33 bp):
TGCGATTTTCATTTCGCGTTGCGATTATCTCGT
Found at i:52005 original size:19 final size:19
Alignment explanation
Indices: 51931--52013 Score: 68
Period size: 19 Copynumber: 4.6 Consensus size: 19
51921 CGATTATCTC
*
51931 GTTGCGATTTTCATTTCGC
1 GTTGCGATTTTCATTTCGT
*
51950 GTTGCGA--TTC-TCTC--
1 GTTGCGATTTTCATTTCGT
**
51964 GTTGCGATAGTCATTTTCGT
1 GTTGCGATTTTCA-TTTCGT
*
51984 GTTGCGATTTTCATTTCAT
1 GTTGCGATTTTCATTTCGT
*
52003 GTTGCAATTTT
1 GTTGCGATTTT
52014 AAGTTTAGAA
Statistics
Matches: 51, Mismatches: 7, Indels: 12
0.73 0.10 0.17
Matches are distributed among these distances:
14 7 0.14
16 5 0.10
17 3 0.06
18 3 0.06
19 22 0.43
20 11 0.22
ACGTcount: A:0.13, C:0.18, G:0.20, T:0.48
Consensus pattern (19 bp):
GTTGCGATTTTCATTTCGT
Found at i:52367 original size:25 final size:26
Alignment explanation
Indices: 52309--52360 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 26
52299 TTTTCATTTC
*
52309 TGAATGATTGTGAGGGATTTCTGACCG
1 TGAATGGTTGTGAGGGATTTC-GACCG
52336 TGAATGGTTGTGAGGGATTTC-ACCG
1 TGAATGGTTGTGAGGGATTTCGACCG
52361 GAGATGGGGA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 4 0.17
27 20 0.83
ACGTcount: A:0.21, C:0.12, G:0.35, T:0.33
Consensus pattern (26 bp):
TGAATGGTTGTGAGGGATTTCGACCG
Found at i:52657 original size:40 final size:40
Alignment explanation
Indices: 52573--52721 Score: 192
Period size: 40 Copynumber: 3.7 Consensus size: 40
52563 TTAAAAATCG
* *
52573 CGTTGCGATTTATAGATACGCGTTGCGATTTTACGTATTGT
1 CGTTGCGATTTACAGATACGCGTTGCGA-TTTACGTATTCT
* * *
52614 CGTTGCGATTTACGGATATGCATTGCGATTTACGTATTCT
1 CGTTGCGATTTACAGATACGCGTTGCGATTTACGTATTCT
* * *
52654 CGTTGCGATTTACAGATACGCGTTGCGATTTACATAATCG
1 CGTTGCGATTTACAGATACGCGTTGCGATTTACGTATTCT
*
52694 CGTTGCGATTTAC-GTATTCGCGTTGCGA
1 CGTTGCGATTTACAG-ATACGCGTTGCGA
52722 ATTAGGAAAA
Statistics
Matches: 95, Mismatches: 12, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
39 1 0.01
40 70 0.74
41 24 0.25
ACGTcount: A:0.20, C:0.18, G:0.24, T:0.38
Consensus pattern (40 bp):
CGTTGCGATTTACAGATACGCGTTGCGATTTACGTATTCT
Found at i:52706 original size:20 final size:20
Alignment explanation
Indices: 52568--52721 Score: 122
Period size: 20 Copynumber: 7.7 Consensus size: 20
52558 GCGCTTTAAA
52568 AATCGCGTTGCGATTT--AT
1 AATCGCGTTGCGATTTACAT
*
52586 AGATACGCGTTGCGATTTTACGT
1 A-AT-CGCGTTGCGA-TTTACAT
*
52609 -ATTGTCGTTGCGATTTACGGAT
1 AATCG-CGTTGCGATTTAC--AT
* *
52631 -AT-GCATTGCGATTTACGT
1 AATCGCGTTGCGATTTACAT
* *
52649 ATTCTCGTTGCGATTTACA-
1 AATCGCGTTGCGATTTACAT
*
52668 GATACGCGTTGCGATTTACAT
1 AAT-CGCGTTGCGATTTACAT
*
52689 AATCGCGTTGCGATTTACGT
1 AATCGCGTTGCGATTTACAT
*
52709 ATTCGCGTTGCGA
1 AATCGCGTTGCGA
52722 ATTAGGAAAA
Statistics
Matches: 109, Mismatches: 15, Indels: 22
0.75 0.10 0.15
Matches are distributed among these distances:
18 2 0.02
19 4 0.04
20 83 0.76
21 16 0.15
22 3 0.03
23 1 0.01
ACGTcount: A:0.21, C:0.18, G:0.24, T:0.37
Consensus pattern (20 bp):
AATCGCGTTGCGATTTACAT
Found at i:52742 original size:21 final size:21
Alignment explanation
Indices: 52718--52784 Score: 98
Period size: 21 Copynumber: 3.2 Consensus size: 21
52708 TATTCGCGTT
* *
52718 GCGAATTAGGAAAATCGCAAC
1 GCGAATTTGGGAAATCGCAAC
*
52739 GCGAATTTGGGAAATTGCAAC
1 GCGAATTTGGGAAATCGCAAC
*
52760 GCGAATTTGGGAAATCGCAAT
1 GCGAATTTGGGAAATCGCAAC
52781 GCGA
1 GCGA
52785 TAGTCAGAAT
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 41 1.00
ACGTcount: A:0.36, C:0.16, G:0.28, T:0.19
Consensus pattern (21 bp):
GCGAATTTGGGAAATCGCAAC
Found at i:56411 original size:8 final size:8
Alignment explanation
Indices: 56398--56425 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
56388 TACTGTTCAA
56398 TTATGTAT
1 TTATGTAT
56406 TTATGTAT
1 TTATGTAT
56414 TTATGTAT
1 TTATGTAT
56422 TTAT
1 TTAT
56426 TTATATATGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.25, C:0.00, G:0.11, T:0.64
Consensus pattern (8 bp):
TTATGTAT
Found at i:56434 original size:16 final size:16
Alignment explanation
Indices: 56399--56434 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
56389 ACTGTTCAAT
*
56399 TATGTATTTATGTATT
1 TATGTATTTATGTATA
*
56415 TATGTATTTATTTATA
1 TATGTATTTATGTATA
56431 TATG
1 TATG
56435 CATTGCATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.11, T:0.61
Consensus pattern (16 bp):
TATGTATTTATGTATA
Found at i:67085 original size:17 final size:17
Alignment explanation
Indices: 67065--67099 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
67055 AGTCGATCAC
67065 TGTGAAAACCATTCTTG
1 TGTGAAAACCATTCTTG
67082 TGTGAAAACCATTCTTG
1 TGTGAAAACCATTCTTG
67099 T
1 T
67100 TCTTACATCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.29, C:0.17, G:0.17, T:0.37
Consensus pattern (17 bp):
TGTGAAAACCATTCTTG
Found at i:69803 original size:110 final size:111
Alignment explanation
Indices: 69602--69826 Score: 344
Period size: 110 Copynumber: 2.0 Consensus size: 111
69592 GTCTCCCTCG
69602 TATATTTTAGATTTTTCTATGTATTTTTTTATGAAAAATATATTTTCGTCTTTTTGAAATTTTAT
1 TATATTTTAGATTTTTCTATGTA-TTTTTTATGAAAAATATATTTTCGTCTTTTTGAAATTTTAT
* * * * * * * *
69667 ATGTTCAATTTTTTCATTTAACTTAAAATCTTGTGTCTGTCCCTTCT
65 AAGTTCAAGTTTGTCATCTAACTTAAAATATCGTGTCTATCCCTGCT
*
69714 TATATTTTAGATTTTTCTATGTA-TTTTTATGAAAAATATATTTTTGTCTTTTTGAAATTTTATA
1 TATATTTTAGATTTTTCTATGTATTTTTTATGAAAAATATATTTTCGTCTTTTTGAAATTTTATA
*
69778 AGTTCAAGTTTGTCATCTAATTTAAAATATCGTGTCTATCCCTGCT
66 AGTTCAAGTTTGTCATCTAACTTAAAATATCGTGTCTATCCCTGCT
69824 TAT
1 TAT
69827 GAGTTATATC
Statistics
Matches: 103, Mismatches: 10, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
110 80 0.78
112 23 0.22
ACGTcount: A:0.27, C:0.10, G:0.09, T:0.54
Consensus pattern (111 bp):
TATATTTTAGATTTTTCTATGTATTTTTTATGAAAAATATATTTTCGTCTTTTTGAAATTTTATA
AGTTCAAGTTTGTCATCTAACTTAAAATATCGTGTCTATCCCTGCT
Found at i:74674 original size:20 final size:22
Alignment explanation
Indices: 74651--74699 Score: 61
Period size: 19 Copynumber: 2.4 Consensus size: 22
74641 TAGAAGCTTG
*
74651 TGGAAGAGTGTG-GAATCCTT-
1 TGGAAGAGTGTGTGAAACCTTA
74671 TGG-AGA-TGTGTGAAACCTTA
1 TGGAAGAGTGTGTGAAACCTTA
74691 TGGAAGAGT
1 TGGAAGAGT
74700 ATGAAAGAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
18 4 0.17
19 10 0.42
20 6 0.25
21 3 0.12
22 1 0.04
ACGTcount: A:0.29, C:0.08, G:0.35, T:0.29
Consensus pattern (22 bp):
TGGAAGAGTGTGTGAAACCTTA
Found at i:74704 original size:20 final size:19
Alignment explanation
Indices: 74651--74705 Score: 58
Period size: 20 Copynumber: 2.8 Consensus size: 19
74641 TAGAAGCTTG
*
74651 TGGAAGAGTGTGGAATCCTT
1 TGGAAGAGTGT-GAAACCTT
74671 TGG-AGATGTGTGAAACCTT
1 TGGAAGA-GTGTGAAACCTT
*
74690 ATGGAAGAGTATGAAA
1 -TGGAAGAGTGTGAAA
74706 GAATATGGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
19 10 0.33
20 17 0.57
21 3 0.10
ACGTcount: A:0.33, C:0.07, G:0.33, T:0.27
Consensus pattern (19 bp):
TGGAAGAGTGTGAAACCTT
Found at i:76049 original size:20 final size:20
Alignment explanation
Indices: 76024--76062 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
76014 GGGATAGAAG
*
76024 TTACACGTGGATTTTTTATT
1 TTACACATGGATTTTTTATT
76044 TTACACATGGATTTTTTAT
1 TTACACATGGATTTTTTAT
76063 GAAGTTACAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.23, C:0.10, G:0.13, T:0.54
Consensus pattern (20 bp):
TTACACATGGATTTTTTATT
Found at i:79823 original size:42 final size:42
Alignment explanation
Indices: 79767--79849 Score: 141
Period size: 42 Copynumber: 2.0 Consensus size: 42
79757 CTCCTTTGCA
*
79767 TCTCAAGGTCTCTAGAGAACCCTATAAGAGCAT-TTTCGAATC
1 TCTCAAGGTCTCTAGAGAACCCTAGAAGAGCATATTT-GAATC
79809 TCTCAAGGTCTCTAGAGAACCCTAGAAGAGCATATTTGAAT
1 TCTCAAGGTCTCTAGAGAACCCTAGAAGAGCATATTTGAAT
79850 ATCTGGAGAA
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
42 36 0.92
43 3 0.08
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.28
Consensus pattern (42 bp):
TCTCAAGGTCTCTAGAGAACCCTAGAAGAGCATATTTGAATC
Found at i:81492 original size:2 final size:2
Alignment explanation
Indices: 81485--81539 Score: 101
Period size: 2 Copynumber: 27.0 Consensus size: 2
81475 GTGTAAAACT
81485 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
81527 TA TA TA TGA TA TA
1 TA TA TA T-A TA TA
81540 CTTTTTTTAT
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
2 50 0.96
3 2 0.04
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (2 bp):
TA
Found at i:86629 original size:15 final size:16
Alignment explanation
Indices: 86599--86641 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 16
86589 TGAAGTACGA
86599 TTTAGTTTTGTATCG-AT
1 TTTA-TTTT-TATCGAAT
86616 TTTATTTTTATCGAAT
1 TTTATTTTTATCGAAT
*
86632 TTTATATTTA
1 TTTATTTTTA
86642 AGTTTAATAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
15 5 0.21
16 15 0.62
17 4 0.17
ACGTcount: A:0.23, C:0.05, G:0.09, T:0.63
Consensus pattern (16 bp):
TTTATTTTTATCGAAT
Found at i:90421 original size:18 final size:18
Alignment explanation
Indices: 90395--90464 Score: 61
Period size: 18 Copynumber: 3.9 Consensus size: 18
90385 ATTATATATG
*
90395 TTTATAGTTATAAGACAT
1 TTTACAGTTATAAGACAT
90413 TTTACAGTTATCAAG-CAT
1 TTTACAGTTAT-AAGACAT
** * * *
90431 TTTTTAGTTATCATATAT
1 TTTACAGTTATAAGACAT
*
90449 TTTACAGTTATCAGAC
1 TTTACAGTTATAAGAC
90465 GTAGCTTAAT
Statistics
Matches: 40, Mismatches: 10, Indels: 4
0.74 0.19 0.07
Matches are distributed among these distances:
17 1 0.03
18 36 0.90
19 3 0.08
ACGTcount: A:0.33, C:0.11, G:0.10, T:0.46
Consensus pattern (18 bp):
TTTACAGTTATAAGACAT
Found at i:91345 original size:2 final size:2
Alignment explanation
Indices: 91338--91366 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
91328 AATATTAGGC
91338 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
91367 ATTATGAACA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:91676 original size:59 final size:58
Alignment explanation
Indices: 91583--91695 Score: 208
Period size: 59 Copynumber: 1.9 Consensus size: 58
91573 TTACGTAATA
*
91583 AGAAAGTAATTCATCATGGAAGTAGGCCAACGGACCCCATTACTCTAAATACTTATCT
1 AGAAAATAATTCATCATGGAAGTAGGCCAACGGACCCCATTACTCTAAATACTTATCT
91641 AGAAAATAATTCATCATGAGAAGTAGGCCAACGGACCCCATTACTCTAAATACTT
1 AGAAAATAATTCATCATG-GAAGTAGGCCAACGGACCCCATTACTCTAAATACTT
91696 GTCTCTAATT
Statistics
Matches: 53, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
58 17 0.32
59 36 0.68
ACGTcount: A:0.38, C:0.22, G:0.15, T:0.25
Consensus pattern (58 bp):
AGAAAATAATTCATCATGGAAGTAGGCCAACGGACCCCATTACTCTAAATACTTATCT
Found at i:93539 original size:22 final size:21
Alignment explanation
Indices: 93497--93539 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
93487 CTTTTTTAAG
* *
93497 GGGATCAATCTTTTGGTCAAA
1 GGGATCAATCCTTTGGCCAAA
*
93518 GGGATCGATCCTTTGAGCCAAA
1 GGGATCAATCCTTTG-GCCAAA
93540 AATCCTTGGA
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.28
Consensus pattern (21 bp):
GGGATCAATCCTTTGGCCAAA
Found at i:96698 original size:33 final size:34
Alignment explanation
Indices: 96661--96734 Score: 82
Period size: 34 Copynumber: 2.2 Consensus size: 34
96651 TAATAATTAC
96661 TTTATTTCATT-AATTTGGTTGGA-TTTATT-TTAA
1 TTTATTTCATTAAATTT-GTTGGACTTT-TTGTTAA
**
96694 TTTATTTTTTTAAATTTGTTGGACTTTTTGTTAA
1 TTTATTTCATTAAATTTGTTGGACTTTTTGTTAA
*
96728 TGTATTT
1 TTTATTT
96735 TGTTTAATTT
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
33 17 0.49
34 18 0.51
ACGTcount: A:0.22, C:0.03, G:0.12, T:0.64
Consensus pattern (34 bp):
TTTATTTCATTAAATTTGTTGGACTTTTTGTTAA
Found at i:96728 original size:34 final size:34
Alignment explanation
Indices: 96672--96748 Score: 95
Period size: 34 Copynumber: 2.2 Consensus size: 34
96662 TTATTTCATT
*
96672 AATTTGGTTGGATTTATTTTAATTTATTTT-TTTA
1 AATTT-GTTGGATTTATTTTAATGTATTTTGTTTA
96706 AATTTGTTGGACTTT-TTGTTAATGTATTTTGTTTA
1 AATTTGTTGGA-TTTATT-TTAATGTATTTTGTTTA
*
96741 ATTTTGTT
1 AATTTGTT
96749 TATTATCATT
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
33 8 0.21
34 19 0.50
35 11 0.29
ACGTcount: A:0.21, C:0.01, G:0.14, T:0.64
Consensus pattern (34 bp):
AATTTGTTGGATTTATTTTAATGTATTTTGTTTA
Found at i:99256 original size:13 final size:14
Alignment explanation
Indices: 99238--99285 Score: 53
Period size: 15 Copynumber: 3.4 Consensus size: 14
99228 ATTTACTAAT
*
99238 TGAGAGA-AATATG
1 TGAGAGAGAAGATG
99251 TGAGAGAGGAAGATG
1 TGAGAGA-GAAGATG
*
99266 TGAGAGAGGAAGGTG
1 TGAGAGA-GAAGATG
99281 TGAGA
1 TGAGA
99286 TTGTTTACAG
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
13 7 0.23
15 24 0.77
ACGTcount: A:0.40, C:0.00, G:0.44, T:0.17
Consensus pattern (14 bp):
TGAGAGAGAAGATG
Found at i:99266 original size:15 final size:15
Alignment explanation
Indices: 99248--99285 Score: 67
Period size: 15 Copynumber: 2.5 Consensus size: 15
99238 TGAGAGAAAT
99248 ATGTGAGAGAGGAAG
1 ATGTGAGAGAGGAAG
99263 ATGTGAGAGAGGAAG
1 ATGTGAGAGAGGAAG
*
99278 GTGTGAGA
1 ATGTGAGA
99286 TTGTTTACAG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.37, C:0.00, G:0.47, T:0.16
Consensus pattern (15 bp):
ATGTGAGAGAGGAAG
Found at i:105519 original size:19 final size:22
Alignment explanation
Indices: 105492--105548 Score: 68
Period size: 23 Copynumber: 2.7 Consensus size: 22
105482 CATACCCTGT
105492 GGGGG-ATCGATTCCC-TC-AA
1 GGGGGAATCGATTCCCATCAAA
105511 -GGGGAATCGATTCCCATTCAAA
1 GGGGGAATCGATTCCCA-TCAAA
*
105533 GGGGGAATCGGTTCCC
1 GGGGGAATCGATTCCC
105549 CTATAAGGGG
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
18 4 0.12
19 10 0.31
21 2 0.06
22 2 0.06
23 14 0.44
ACGTcount: A:0.23, C:0.25, G:0.32, T:0.21
Consensus pattern (22 bp):
GGGGGAATCGATTCCCATCAAA
Found at i:110994 original size:17 final size:17
Alignment explanation
Indices: 110972--111012 Score: 64
Period size: 17 Copynumber: 2.4 Consensus size: 17
110962 TCTCTCTTGA
110972 TTCTTGTCGATTGTTGT
1 TTCTTGTCGATTGTTGT
*
110989 TTCTTGTTGATTGTTGT
1 TTCTTGTCGATTGTTGT
*
111006 TTATTGT
1 TTCTTGT
111013 TATTGATCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.07, C:0.07, G:0.22, T:0.63
Consensus pattern (17 bp):
TTCTTGTCGATTGTTGT
Found at i:111013 original size:17 final size:17
Alignment explanation
Indices: 110975--111017 Score: 61
Period size: 17 Copynumber: 2.6 Consensus size: 17
110965 CTCTTGATTC
* *
110975 TTGTCGATTGTTGTTTC
1 TTGTTGATTGTTGTTTA
110992 TTGTTGATTGTTGTTTA
1 TTGTTGATTGTTGTTTA
111009 TTGTT-ATTG
1 TTGTTGATTG
111018 ATCAATGGCT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
16 4 0.17
17 20 0.83
ACGTcount: A:0.09, C:0.05, G:0.23, T:0.63
Consensus pattern (17 bp):
TTGTTGATTGTTGTTTA
Found at i:116472 original size:2 final size:2
Alignment explanation
Indices: 116417--116452 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
116407 ATGTTTTCAA
116417 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
116453 TAAATTAAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:116480 original size:18 final size:19
Alignment explanation
Indices: 116446--116485 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
116436 TATATATATA
*
116446 TATATATTAAATTAAAATT
1 TATATATTAAATTAAAACT
*
116465 TATATA-TAATTTAAAACT
1 TATATATTAAATTAAAACT
116483 TAT
1 TAT
116486 TTCAAAACAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (19 bp):
TATATATTAAATTAAAACT
Found at i:117565 original size:27 final size:26
Alignment explanation
Indices: 117516--117577 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 26
117506 AACAACAAAT
117516 ATAAAAAAACACGTCCATCAATAAAC
1 ATAAAAAAACACGTCCATCAATAAAC
* * *
117542 ATAAAATAAACATGTTCATTAATAAAC
1 ATAAAA-AAACACGTCCATCAATAAAC
*
117569 ATAATAAAA
1 ATAAAAAAA
117578 TAAACCAATG
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 9 0.29
27 22 0.71
ACGTcount: A:0.60, C:0.15, G:0.03, T:0.23
Consensus pattern (26 bp):
ATAAAAAAACACGTCCATCAATAAAC
Found at i:120996 original size:26 final size:27
Alignment explanation
Indices: 120949--121000 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
120939 AAATTCATAT
*
120949 TTTTTTATATATCTTAACTTAAAAATG
1 TTTTTTATATAACTTAACTTAAAAATG
120976 TTTTTTATATTAACTT-A-TTAAAAAT
1 TTTTTTATA-TAACTTAACTTAAAAAT
121001 ATATATTTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 8 0.35
27 10 0.43
28 5 0.22
ACGTcount: A:0.38, C:0.06, G:0.02, T:0.54
Consensus pattern (27 bp):
TTTTTTATATAACTTAACTTAAAAATG
Found at i:123899 original size:36 final size:38
Alignment explanation
Indices: 123850--123931 Score: 98
Period size: 36 Copynumber: 2.2 Consensus size: 38
123840 CATTAAATTT
**
123850 TTTTATATTTTTAATT-TTGTAAAAAAAT-TATATAA-A
1 TTTTATAAATTTAATTATTGTAAAAAAATATATA-AATA
* *
123886 TTTTATAAATTTAATTATTTTAAGAAAATATATAAATA
1 TTTTATAAATTTAATTATTGTAAAAAAATATATAAATA
123924 TTTTATAA
1 TTTTATAA
123932 TTTGTAATAT
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
36 14 0.36
37 12 0.31
38 13 0.33
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.51
Consensus pattern (38 bp):
TTTTATAAATTTAATTATTGTAAAAAAATATATAAATA
Found at i:126465 original size:12 final size:12
Alignment explanation
Indices: 126450--126480 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
126440 GATATTTAAA
126450 CGGGTATCGGGC
1 CGGGTATCGGGC
126462 CGGGTATCGGGC
1 CGGGTATCGGGC
*
126474 CAGGTAT
1 CGGGTAT
126481 ATATATATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.13, C:0.23, G:0.45, T:0.19
Consensus pattern (12 bp):
CGGGTATCGGGC
Found at i:126485 original size:2 final size:2
Alignment explanation
Indices: 126478--126572 Score: 51
Period size: 2 Copynumber: 51.0 Consensus size: 2
126468 TCGGGCCAGG
* * * *
126478 TA TA TA TA TA TA TA TA TA TT TA AA T- TA AA TA TA TA AA TA T-
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * * * * *
126518 TA TA TA TA T- TT TT TA -A TT TA AA T- TA AA TT TA T- TA -A TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
126555 TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA
126573 ATAATTATTT
Statistics
Matches: 69, Mismatches: 17, Indels: 14
0.69 0.17 0.14
Matches are distributed among these distances:
1 7 0.10
2 62 0.90
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:130459 original size:16 final size:16
Alignment explanation
Indices: 130411--130461 Score: 75
Period size: 16 Copynumber: 3.2 Consensus size: 16
130401 GCTTTTAAAT
*
130411 TTTTTTTGAGTTCAAG
1 TTTTTTCGAGTTCAAG
**
130427 CCTTTTCGAGTTCAAG
1 TTTTTTCGAGTTCAAG
130443 TTTTTTCGAGTTCAAG
1 TTTTTTCGAGTTCAAG
130459 TTT
1 TTT
130462 CAATATTATA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 30 1.00
ACGTcount: A:0.18, C:0.14, G:0.18, T:0.51
Consensus pattern (16 bp):
TTTTTTCGAGTTCAAG
Found at i:135152 original size:21 final size:21
Alignment explanation
Indices: 135123--135169 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
135113 ATTCTGACTA
*
135123 TCGCATTGCGA-TTTCCTAAAT
1 TCGCATTGCAATTTTCCT-AAT
*
135144 TCGCGTTGCAATTTTCCTAAT
1 TCGCATTGCAATTTTCCTAAT
135165 TCGCA
1 TCGCA
135170 ATGCGAAGAC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
21 16 0.73
22 6 0.27
ACGTcount: A:0.21, C:0.26, G:0.15, T:0.38
Consensus pattern (21 bp):
TCGCATTGCAATTTTCCTAAT
Found at i:135237 original size:20 final size:20
Alignment explanation
Indices: 135165--135238 Score: 85
Period size: 20 Copynumber: 3.6 Consensus size: 20
135155 TTTTCCTAAT
**
135165 TCGCAATGCGAAGACGTAAA
1 TCGCAATGCGATTACGTAAA
* ** *
135185 TCGCAACGCGAATTTGGAAAA
1 TCGCAATGCG-ATTACGTAAA
135206 TCGCAATGCGATTACGTAAA
1 TCGCAATGCGATTACGTAAA
135226 TCGCAATGCGATT
1 TCGCAATGCGATT
135239 TACATAGCGC
Statistics
Matches: 43, Mismatches: 10, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
20 29 0.67
21 14 0.33
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (20 bp):
TCGCAATGCGATTACGTAAA
Found at i:135439 original size:22 final size:22
Alignment explanation
Indices: 135414--135475 Score: 60
Period size: 22 Copynumber: 3.0 Consensus size: 22
135404 GGCGACATCC
135414 GTCCCCATCTCCGACGAAATCA
1 GTCCCCATCTCCGACGAAATCA
*
135436 GTCCCCA----CGACGATATCA
1 GTCCCCATCTCCGACGAAATCA
* * *
135454 ATCTCCATCTCCGGCGAAATCA
1 GTCCCCATCTCCGACGAAATCA
135476 TTCACGGTCA
Statistics
Matches: 31, Mismatches: 5, Indels: 8
0.70 0.11 0.18
Matches are distributed among these distances:
18 15 0.48
22 16 0.52
ACGTcount: A:0.27, C:0.39, G:0.15, T:0.19
Consensus pattern (22 bp):
GTCCCCATCTCCGACGAAATCA
Found at i:135848 original size:33 final size:33
Alignment explanation
Indices: 135800--135913 Score: 95
Period size: 40 Copynumber: 3.2 Consensus size: 33
135790 ACTATCGCAA
135800 TGCGATTC-TGTCGTTGCGATTTTCATTTCGCGT
1 TGCGATTCTTG-CGTTGCGATTTTCATTTCGCGT
** *
135833 TGCGATTCTTGCGTTGCGATAGTCAAATTCGCGT
1 TGCGATTCTTGCGTTGCGATTTTC-ATTTCGCGT
* *
135867 TGCGATAGTCATTTTCGTGTTGCGATTTTCATTTTCGTGT
1 TGCGAT--TC---TT-GCGTTGCGATTTTCA-TTTCGCGT
135907 TGCGATT
1 TGCGATT
135914 TAAAGTTTTG
Statistics
Matches: 64, Mismatches: 8, Indels: 13
0.75 0.09 0.15
Matches are distributed among these distances:
33 19 0.30
34 16 0.25
36 2 0.03
38 1 0.02
39 3 0.05
40 23 0.36
ACGTcount: A:0.13, C:0.18, G:0.25, T:0.44
Consensus pattern (33 bp):
TGCGATTCTTGCGTTGCGATTTTCATTTCGCGT
Found at i:135868 original size:20 final size:20
Alignment explanation
Indices: 135843--135892 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
135833 TGCGATTCTT
135843 GCGTTGCGATAGTCAAATTC
1 GCGTTGCGATAGTCAAATTC
**
135863 GCGTTGCGATAGTCATTTTC
1 GCGTTGCGATAGTCAAATTC
*
135883 GTGTTGCGAT
1 GCGTTGCGAT
135893 TTTCATTTTC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.18, C:0.18, G:0.28, T:0.36
Consensus pattern (20 bp):
GCGTTGCGATAGTCAAATTC
Found at i:135869 original size:34 final size:33
Alignment explanation
Indices: 135800--135872 Score: 94
Period size: 33 Copynumber: 2.2 Consensus size: 33
135790 ACTATCGCAA
** *
135800 TGCGATTCTGTCGTTGCGATTTTCATTTCGCGT
1 TGCGATTCTGTCGTTGCGATAGTCAATTCGCGT
135833 TGCGATTCT-TGCGTTGCGATAGTCAAATTCGCGT
1 TGCGATTCTGT-CGTTGCGATAGTC-AATTCGCGT
135867 TGCGAT
1 TGCGAT
135873 AGTCATTTTC
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
32 1 0.03
33 20 0.57
34 14 0.40
ACGTcount: A:0.14, C:0.21, G:0.26, T:0.40
Consensus pattern (33 bp):
TGCGATTCTGTCGTTGCGATAGTCAATTCGCGT
Found at i:135898 original size:20 final size:20
Alignment explanation
Indices: 135860--135914 Score: 83
Period size: 20 Copynumber: 2.8 Consensus size: 20
135850 GATAGTCAAA
* **
135860 TTCGCGTTGCGATAGTCATT
1 TTCGTGTTGCGATTTTCATT
135880 TTCGTGTTGCGATTTTCATT
1 TTCGTGTTGCGATTTTCATT
135900 TTCGTGTTGCGATTT
1 TTCGTGTTGCGATTT
135915 AAAGTTTTGC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.11, C:0.16, G:0.24, T:0.49
Consensus pattern (20 bp):
TTCGTGTTGCGATTTTCATT
Found at i:137833 original size:20 final size:20
Alignment explanation
Indices: 137808--137910 Score: 139
Period size: 20 Copynumber: 5.5 Consensus size: 20
137798 AGAATAGTTT
137808 ACTATCGCAATGCGAAAATG
1 ACTATCGCAATGCGAAAATG
*
137828 ACTATCGCAACGCG-AAATG
1 ACTATCGCAATGCGAAAATG
*
137847 ACTATCGCAA--CG-AGA-G
1 ACTATCGCAATGCGAAAATG
137863 A--ATCGCAATGCGAAAATG
1 ACTATCGCAATGCGAAAATG
137881 ACTATCGCAATGCGAAAATG
1 ACTATCGCAATGCGAAAATG
137901 ACTATCGCAA
1 ACTATCGCAA
137911 CGAAATAATC
Statistics
Matches: 74, Mismatches: 3, Indels: 12
0.83 0.03 0.13
Matches are distributed among these distances:
14 7 0.09
16 4 0.05
17 6 0.08
18 2 0.03
19 15 0.20
20 40 0.54
ACGTcount: A:0.40, C:0.22, G:0.20, T:0.17
Consensus pattern (20 bp):
ACTATCGCAATGCGAAAATG
Found at i:137948 original size:53 final size:54
Alignment explanation
Indices: 137811--137931 Score: 208
Period size: 54 Copynumber: 2.3 Consensus size: 54
137801 ATAGTTTACT
* *
137811 ATCGCAATGCGAAAATGACTATCGCAACGCG-AAATGACTATCGCAACGAGAGA
1 ATCGCAATGCGAAAATGACTATCGCAATGCGAAAATGACTATCGCAACGAAAGA
*
137864 ATCGCAATGCGAAAATGACTATCGCAATGCGAAAATGACTATCGCAACGAAATA
1 ATCGCAATGCGAAAATGACTATCGCAATGCGAAAATGACTATCGCAACGAAAGA
137918 ATCGCAATGCGAAA
1 ATCGCAATGCGAAA
137932 TGAAAATTGC
Statistics
Matches: 64, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
53 30 0.47
54 34 0.53
ACGTcount: A:0.41, C:0.21, G:0.21, T:0.17
Consensus pattern (54 bp):
ATCGCAATGCGAAAATGACTATCGCAATGCGAAAATGACTATCGCAACGAAAGA
Found at i:137982 original size:20 final size:20
Alignment explanation
Indices: 137957--138023 Score: 80
Period size: 20 Copynumber: 3.4 Consensus size: 20
137947 GATTCTCTCG
*
137957 TTGCGATAGTCAAATTCGTA
1 TTGCGATAGTCAAATTCGCA
**
137977 TTGCGATAGTCATTTTCGCA
1 TTGCGATAGTCAAATTCGCA
** *
137997 TTGCGATAGTCATTTTCGCG
1 TTGCGATAGTCAAATTCGCA
138017 TTGCGAT
1 TTGCGAT
138024 TTTGTTGTTG
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.21, C:0.18, G:0.22, T:0.39
Consensus pattern (20 bp):
TTGCGATAGTCAAATTCGCA
Found at i:138021 original size:40 final size:35
Alignment explanation
Indices: 137943--138131 Score: 154
Period size: 40 Copynumber: 5.2 Consensus size: 35
137933 GAAAATTGCA
* ** **
137943 TTGCGATTC-TCTCGTTGCGATAGTCAAATTCGTA
1 TTGCGATTCTTTTCGTTGCGATAGTCATTTTCGCG
137977 TTGCGATAGTCATTTTCGCATTGCGATAGTCATTTTCGCG
1 TTGCGAT--TC-TTTTCG--TTGCGATAGTCATTTTCGCG
** *
138017 TTGCGATT-TTGTT-GTTGCGATTTTCA-TTTCGCA
1 TTGCGATTCTT-TTCGTTGCGATAGTCATTTTCGCG
*
138050 TTGCGATTC-TCTCGTTGCGATAGTCATTTTCGCG
1 TTGCGATTCTTTTCGTTGCGATAGTCATTTTCGCG
*
138084 TTGTGATAGTCATTTTCGCGTTGCGATAGTCATTTTCGCG
1 TTGCGAT--TC-TTTT--CGTTGCGATAGTCATTTTCGCG
138124 TTGCGATT
1 TTGCGATT
138132 TTAAGTTTCA
Statistics
Matches: 124, Mismatches: 15, Indels: 28
0.74 0.09 0.17
Matches are distributed among these distances:
32 1 0.01
33 26 0.21
34 29 0.23
36 7 0.06
37 2 0.02
38 8 0.06
40 51 0.41
ACGTcount: A:0.15, C:0.19, G:0.23, T:0.43
Consensus pattern (35 bp):
TTGCGATTCTTTTCGTTGCGATAGTCATTTTCGCG
Found at i:138036 original size:107 final size:107
Alignment explanation
Indices: 137925--138133 Score: 303
Period size: 107 Copynumber: 2.0 Consensus size: 107
137915 ATAATCGCAA
*
137925 TGCGAAATGAAAATT-GCATTGCGATTCTCTCGTTGCGATAGTCAAATTCGTATTGCGATAGTCA
1 TGCG-AATGAAAATTCGCATTGCGATTCTCTCGTTGCGATAGTCAAATTCGCATTGCGATAGTCA
137989 TTTTCGCATTGCGATAGTCATTTTCGCGTTGCGATTTTGTTGT
65 TTTTCGCATTGCGATAGTCATTTTCGCGTTGCGATTTTGTTGT
* *** * ** * *
138032 TGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATAGTCATTTTCGCGTTGTGATAGTCAT
1 TGCGAATGAAAATTCGCATTGCGATTCTCTCGTTGCGATAGTCAAATTCGCATTGCGATAGTCAT
*
138097 TTTCGCGTTGCGATAGTCATTTTCGCGTTGCGATTTT
66 TTTCGCATTGCGATAGTCATTTTCGCGTTGCGATTTT
138134 AAGTTTCAGA
Statistics
Matches: 90, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
106 5 0.06
107 85 0.94
ACGTcount: A:0.18, C:0.18, G:0.22, T:0.42
Consensus pattern (107 bp):
TGCGAATGAAAATTCGCATTGCGATTCTCTCGTTGCGATAGTCAAATTCGCATTGCGATAGTCAT
TTTCGCATTGCGATAGTCATTTTCGCGTTGCGATTTTGTTGT
Found at i:138091 original size:20 final size:20
Alignment explanation
Indices: 138062--138130 Score: 129
Period size: 20 Copynumber: 3.5 Consensus size: 20
138052 GCGATTCTCT
138062 CGTTGCGATAGTCATTTTCG
1 CGTTGCGATAGTCATTTTCG
*
138082 CGTTGTGATAGTCATTTTCG
1 CGTTGCGATAGTCATTTTCG
138102 CGTTGCGATAGTCATTTTCG
1 CGTTGCGATAGTCATTTTCG
138122 CGTTGCGAT
1 CGTTGCGAT
138131 TTTAAGTTTC
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 47 1.00
ACGTcount: A:0.14, C:0.19, G:0.26, T:0.41
Consensus pattern (20 bp):
CGTTGCGATAGTCATTTTCG
Found at i:138140 original size:20 final size:20
Alignment explanation
Indices: 138062--138140 Score: 77
Period size: 20 Copynumber: 4.0 Consensus size: 20
138052 GCGATTCTCT
* *
138062 CGTTGCGATAGTCATTTTCG
1 CGTTGCGATAGTAAGTTTCG
* * *
138082 CGTTGTGATAGTCATTTTCG
1 CGTTGCGATAGTAAGTTTCG
* *
138102 CGTTGCGATAGTCATTTTCG
1 CGTTGCGATAGTAAGTTTCG
**
138122 CGTTGCGATTTTAAGTTTC
1 CGTTGCGATAGTAAGTTTC
138141 AGATTCTATT
Statistics
Matches: 53, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 53 1.00
ACGTcount: A:0.15, C:0.18, G:0.24, T:0.43
Consensus pattern (20 bp):
CGTTGCGATAGTAAGTTTCG
Found at i:140096 original size:14 final size:14
Alignment explanation
Indices: 140077--140112 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
140067 ATTGTTTAAT
140077 TGATTTGTAAAAGA
1 TGATTTGTAAAAGA
* *
140091 TGATTTGTAAATGT
1 TGATTTGTAAAAGA
140105 TGATTTGT
1 TGATTTGT
140113 TTAATTGATG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.31, C:0.00, G:0.22, T:0.47
Consensus pattern (14 bp):
TGATTTGTAAAAGA
Found at i:140302 original size:34 final size:33
Alignment explanation
Indices: 140225--140309 Score: 107
Period size: 33 Copynumber: 2.5 Consensus size: 33
140215 TCGCAACACG
**
140225 GAAATGACTATCGCAACGAGAGAATCGCAATGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAATGC
* * *
140258 GAAATGAAAATCGCAACGAGTGAATTGCAATGT
1 GAAATGAAAATCGCAACGAGAGAATCGCAATGC
*
140291 GAAAATGAAAATCGTAACG
1 G-AAATGAAAATCGCAACG
140310 CGATGCATTA
Statistics
Matches: 45, Mismatches: 6, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
33 29 0.64
34 16 0.36
ACGTcount: A:0.44, C:0.15, G:0.24, T:0.18
Consensus pattern (33 bp):
GAAATGAAAATCGCAACGAGAGAATCGCAATGC
Found at i:140390 original size:33 final size:34
Alignment explanation
Indices: 140340--140435 Score: 113
Period size: 33 Copynumber: 2.9 Consensus size: 34
140330 AAAACAGACT
* **
140340 ATCGCAACGCGGAAATGACTATCACAACGAGAGA
1 ATCGCAATGCGGAAATGAAAATCACAACGAGAGA
* *
140374 ATCGCAATGC-GAAATGAAAATCGCAACGAGTGA
1 ATCGCAATGCGGAAATGAAAATCACAACGAGAGA
** *
140407 ATCGCAATGCAAAAATGAAAATCGCAACG
1 ATCGCAATGCGGAAATGAAAATCACAACG
140436 CGAAATTAGT
Statistics
Matches: 55, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
33 29 0.53
34 26 0.47
ACGTcount: A:0.44, C:0.21, G:0.22, T:0.14
Consensus pattern (34 bp):
ATCGCAATGCGGAAATGAAAATCACAACGAGAGA
Found at i:140414 original size:126 final size:126
Alignment explanation
Indices: 140187--140438 Score: 450
Period size: 126 Copynumber: 2.0 Consensus size: 126
140177 GATTTCAATC
*
140187 TGCATTATGTTGAATGCAAAACAGACTATCGCAACACGGAAATGACTATCGCAACGAGAGAATCG
1 TGCATTATGTTGAATGCAAAACAGACTATCGCAACACGGAAATGACTATCACAACGAGAGAATCG
* ** *
140252 CAATGCGAAATGAAAATCGCAACGAGTGAATTGCAATGTGAAAATGAAAATCGTAACGCGA
66 CAATGCGAAATGAAAATCGCAACGAGTGAATCGCAATGCAAAAATGAAAATCGCAACGCGA
*
140313 TGCATTATGTTGAATGCAAAACAGACTATCGCAACGCGGAAATGACTATCACAACGAGAGAATCG
1 TGCATTATGTTGAATGCAAAACAGACTATCGCAACACGGAAATGACTATCACAACGAGAGAATCG
140378 CAATGCGAAATGAAAATCGCAACGAGTGAATCGCAATGCAAAAATGAAAATCGCAACGCGA
66 CAATGCGAAATGAAAATCGCAACGAGTGAATCGCAATGCAAAAATGAAAATCGCAACGCGA
140439 AATTAGTTTC
Statistics
Matches: 120, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
126 120 1.00
ACGTcount: A:0.42, C:0.19, G:0.22, T:0.18
Consensus pattern (126 bp):
TGCATTATGTTGAATGCAAAACAGACTATCGCAACACGGAAATGACTATCACAACGAGAGAATCG
CAATGCGAAATGAAAATCGCAACGAGTGAATCGCAATGCAAAAATGAAAATCGCAACGCGA
Found at i:140428 original size:34 final size:33
Alignment explanation
Indices: 140364--140435 Score: 117
Period size: 33 Copynumber: 2.2 Consensus size: 33
140354 ATGACTATCA
*
140364 CAACGAGAGAATCGCAATGCGAAATGAAAATCG
1 CAACGAGAGAATCGCAATGCAAAATGAAAATCG
*
140397 CAACGAGTGAATCGCAATGCAAAAATGAAAATCG
1 CAACGAGAGAATCGCAATGC-AAAATGAAAATCG
140431 CAACG
1 CAACG
140436 CGAAATTAGT
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
33 19 0.53
34 17 0.47
ACGTcount: A:0.46, C:0.19, G:0.22, T:0.12
Consensus pattern (33 bp):
CAACGAGAGAATCGCAATGCAAAATGAAAATCG
Found at i:140514 original size:33 final size:33
Alignment explanation
Indices: 140445--140514 Score: 86
Period size: 33 Copynumber: 2.1 Consensus size: 33
140435 GCGAAATTAG
* * ** *
140445 TTTCGCATTGCGATTCACTCGTTGCGCTTTTTA
1 TTTCGCATTGCGATTCACTCATTGCGATAGTCA
*
140478 TTTCGCATTGCGATTCTCTCATTGCGATAGTCA
1 TTTCGCATTGCGATTCACTCATTGCGATAGTCA
140511 TTTC
1 TTTC
140515 CGCGCTGCGA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.14, C:0.24, G:0.17, T:0.44
Consensus pattern (33 bp):
TTTCGCATTGCGATTCACTCATTGCGATAGTCA
Found at i:140525 original size:20 final size:20
Alignment explanation
Indices: 140499--140585 Score: 104
Period size: 20 Copynumber: 4.3 Consensus size: 20
140489 GATTCTCTCA
*
140499 TTGCGATAGTCATTTCCGCG
1 TTGCGATAGTCATTTCCACG
* * *
140519 CTGCGATAGTCAATTCCACA
1 TTGCGATAGTCATTTCCACG
*
140539 TTGCGATAGTCATTTCCATG
1 TTGCGATAGTCATTTCCACG
*
140559 TTGCGATAGTCATATT-CGCG
1 TTGCGATAGTCAT-TTCCACG
140579 TTGCGAT
1 TTGCGAT
140586 TTCCGCGTTG
Statistics
Matches: 56, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
20 54 0.96
21 2 0.04
ACGTcount: A:0.21, C:0.23, G:0.22, T:0.34
Consensus pattern (20 bp):
TTGCGATAGTCATTTCCACG
Found at i:140552 original size:40 final size:41
Alignment explanation
Indices: 140497--140575 Score: 124
Period size: 40 Copynumber: 2.0 Consensus size: 41
140487 GCGATTCTCT
*
140497 CATTGCGATAGTCATTTCCGCGCTGCGATAGTCA-ATTCCA
1 CATTGCGATAGTCATTTCCACGCTGCGATAGTCATATTCCA
* *
140537 CATTGCGATAGTCATTTCCATGTTGCGATAGTCATATTC
1 CATTGCGATAGTCATTTCCACGCTGCGATAGTCATATTC
140576 GCGTTGCGAT
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
40 31 0.89
41 4 0.11
ACGTcount: A:0.23, C:0.24, G:0.19, T:0.34
Consensus pattern (41 bp):
CATTGCGATAGTCATTTCCACGCTGCGATAGTCATATTCCA
Found at i:143051 original size:24 final size:24
Alignment explanation
Indices: 143017--143071 Score: 85
Period size: 24 Copynumber: 2.3 Consensus size: 24
143007 CTAAAAAATC
143017 ATCAAAATCCGAGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
* *
143041 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
143065 AT-AAAAT
1 ATCAAAAT
143072 TTCGAATACT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
23 4 0.14
24 24 0.86
ACGTcount: A:0.42, C:0.18, G:0.18, T:0.22
Consensus pattern (24 bp):
ATCAAAATCCGAGTATTGACCAAG
Found at i:143945 original size:20 final size:20
Alignment explanation
Indices: 143930--143997 Score: 102
Period size: 20 Copynumber: 3.4 Consensus size: 20
143920 GTCAGAATCT
143930 CGTTGCGATTTACAGATTCG
1 CGTTGCGATTTACAGATTCG
143950 CGTTGCGATTTACAGATTCG
1 CGTTGCGATTTACAGATTCG
*
143970 CATTGCGATTTAC-GTATTCG
1 CGTTGCGATTTACAG-ATTCG
*
143990 CATTGCGA
1 CGTTGCGA
143998 ATTAGGAAAA
Statistics
Matches: 46, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
19 1 0.02
20 45 0.98
ACGTcount: A:0.21, C:0.21, G:0.24, T:0.35
Consensus pattern (20 bp):
CGTTGCGATTTACAGATTCG
Found at i:143958 original size:40 final size:40
Alignment explanation
Indices: 143911--143997 Score: 97
Period size: 40 Copynumber: 2.2 Consensus size: 40
143901 GAAATTCATT
* *
143911 ATTGCGATAGT-CAGAATCTCGTTGCGATTTACAG-ATTCGC
1 ATTGCGAT-GTACAGAATCGCATTGCGATTTAC-GTATTCGC
* * *
143951 GTTGCGATTTACAGATTCGCATTGCGATTTACGTATTCGC
1 ATTGCGATGTACAGAATCGCATTGCGATTTACGTATTCGC
143991 ATTGCGA
1 ATTGCGA
143998 ATTAGGAAAA
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
39 2 0.05
40 37 0.95
ACGTcount: A:0.23, C:0.20, G:0.23, T:0.34
Consensus pattern (40 bp):
ATTGCGATGTACAGAATCGCATTGCGATTTACGTATTCGC
Found at i:144432 original size:14 final size:14
Alignment explanation
Indices: 144389--144424 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
144379 TATTATTATT
*
144389 TATT-AAATAAAAA
1 TATTAAAATATAAA
144402 TATTAAAATATAAA
1 TATTAAAATATAAA
144416 TATTAAAAT
1 TATTAAAAT
144425 TAATATATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
13 4 0.19
14 17 0.81
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (14 bp):
TATTAAAATATAAA
Found at i:144915 original size:15 final size:16
Alignment explanation
Indices: 144878--144919 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
144868 ATGCTTAACA
144878 TATATTTGT-AATATTT
1 TATATTT-TAAATATTT
*
144894 TAAATTTTAAATA-TT
1 TATATTTTAAATATTT
144909 TATATTTTAAA
1 TATATTTTAAA
144920 AAAATCATAC
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
15 13 0.57
16 10 0.43
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.57
Consensus pattern (16 bp):
TATATTTTAAATATTT
Found at i:153621 original size:93 final size:93
Alignment explanation
Indices: 153461--153643 Score: 303
Period size: 93 Copynumber: 2.0 Consensus size: 93
153451 TGTGAATCTG
* *
153461 GATGGTTCTTACACACCACAAATGTCTCCCAGTTTGAGCTATGAAATTAGACATCAGTCATTTGA
1 GATGGTTCTTACACACCACAAATGTCTCCCAGTTTGAGCTATGAAATTAGACAGCAGTCATTCGA
*
153526 TCAAGATCCAATTCTTAATAACAATTCT
66 TCAAGATCCAATGCTTAATAACAATTCT
* * *
153554 GATGGTTCTTACGCGCCACAAATGTCTCCCAGTTTGAGCTATGAAATTAGGCAGCAGTCATTCGA
1 GATGGTTCTTACACACCACAAATGTCTCCCAGTTTGAGCTATGAAATTAGACAGCAGTCATTCGA
*
153619 TCAAGATGCAATGCTTAATAACAAT
66 TCAAGATCCAATGCTTAATAACAAT
153644 CTTGAAGGAA
Statistics
Matches: 83, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 83 1.00
ACGTcount: A:0.32, C:0.21, G:0.16, T:0.30
Consensus pattern (93 bp):
GATGGTTCTTACACACCACAAATGTCTCCCAGTTTGAGCTATGAAATTAGACAGCAGTCATTCGA
TCAAGATCCAATGCTTAATAACAATTCT
Found at i:167721 original size:17 final size:18
Alignment explanation
Indices: 167699--167733 Score: 63
Period size: 17 Copynumber: 2.0 Consensus size: 18
167689 TTACTATTCA
167699 CGTGAATAGTG-AATTTT
1 CGTGAATAGTGAAATTTT
167716 CGTGAATAGTGAAATTTT
1 CGTGAATAGTGAAATTTT
167734 TTCGGCGATA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.65
18 6 0.35
ACGTcount: A:0.31, C:0.06, G:0.23, T:0.40
Consensus pattern (18 bp):
CGTGAATAGTGAAATTTT
Found at i:174910 original size:7 final size:7
Alignment explanation
Indices: 174900--175246 Score: 205
Period size: 7 Copynumber: 47.0 Consensus size: 7
174890 ATATATGTAC
174900 TATAATA
1 TATAATA
174907 TATAATA
1 TATAATA
*
174914 TGTAATA
1 TATAATA
174921 TATAATACTA
1 TAT-A-A-TA
174931 TATAATA
1 TATAATA
174938 CTATAATA
1 -TATAATA
*
174946 -ATACTA
1 TATAATA
174952 TTATAA-A
1 -TATAATA
174959 TATAATA
1 TATAATA
174966 CTAT-ATA
1 -TATAATA
174973 CTATAATA
1 -TATAATA
174981 -ATAATA
1 TATAATA
174987 TA-ATATAA
1 TATA-AT-A
174995 TATAATA
1 TATAATA
175002 T-T-A-A
1 TATAATA
175006 TATAATA
1 TATAATA
175013 TATAATA
1 TATAATA
175020 TATACTATA
1 TATA--ATA
175029 TTATAATA
1 -TATAATA
175037 TATAATA
1 TATAATA
* *
175044 CATACTA
1 TATAATA
*
175051 TACAATA
1 TATAATA
175058 TAT-ATAA
1 TATAAT-A
175065 TATACTATAA
1 TATA--AT-A
175075 TATAATA
1 TATAATA
175082 TA-ATATA
1 TATA-ATA
175089 TATATATA
1 TATA-ATA
175097 TATAATA
1 TATAATA
*
175104 TTATACTA
1 -TATAATA
175112 TATAACATA
1 TAT-A-ATA
*
175121 CCATATATA
1 -TATA-ATA
*
175130 TATACTA
1 TATAATA
175137 TATAATA
1 TATAATA
*
175144 CACT-ATA
1 TA-TAATA
*
175151 TATACTA
1 TATAATA
175158 TATAATA
1 TATAATA
175165 TA-AATA
1 TATAATA
175171 TTATAATA
1 -TATAATA
*
175179 TATATTA
1 TATAATA
175186 TATAATA
1 TATAATA
* *
175193 CATACTA
1 TATAATA
175200 TATAATAA
1 TATAAT-A
175208 TATAATATAA
1 TAT-A-AT-A
175218 TATAATA
1 TATAATA
* *
175225 TGTAAAA
1 TATAATA
175232 TATAATA
1 TATAATA
175239 TAATAATA
1 T-ATAATA
175247 CCGGACGAAA
Statistics
Matches: 272, Mismatches: 31, Indels: 73
0.72 0.08 0.19
Matches are distributed among these distances:
4 2 0.01
5 2 0.01
6 27 0.10
7 137 0.50
8 64 0.24
9 14 0.05
10 26 0.10
ACGTcount: A:0.53, C:0.06, G:0.01, T:0.41
Consensus pattern (7 bp):
TATAATA
Found at i:174914 original size:5 final size:5
Alignment explanation
Indices: 174876--175243 Score: 191
Period size: 5 Copynumber: 72.8 Consensus size: 5
174866 ATAAATCTAA
* * *
174876 AATAT AA-AT AATA- AATAT -ATGT ACTAT AATAT -ATA- ATATGT AATAT
1 AATAT AATAT AATAT AATAT AATAT AATAT AATAT AATAT A-ATAT AATAT
* * * *
174922 -ATAAT ACTAT -ATAAT ACTAT AATAAT ACTAT TATA- AATAT AATACT
1 AAT-AT AATAT AAT-AT AATAT AAT-AT AATAT AATAT AATAT AATA-T
*
174968 -ATAT ACTAT AATAAT AATAT AATAT AATAT AATATT AATAT AATAT -ATA-
1 AATAT AATAT AAT-AT AATAT AATAT AATAT AATA-T AATAT AATAT AATAT
* * *
175017 ATATAT ACTAT ATTAT AATAT -ATAAT ACATACT -ATAC AATAT -ATAT
1 A-ATAT AATAT AATAT AATAT AAT-AT A-ATA-T AATAT AATAT AATAT
* *
175063 AATAT ACTAT AATAT AATAT AATAT ATATAT ATATAT AATAT TATACT
1 AATAT AATAT AATAT AATAT AATAT A-ATAT A-ATAT AATAT AATA-T
* * *
175111 -ATAT AACAT ACCATAT ATATAT ACTATAT AATAC ACTAT -ATAT ACTATAT
1 AATAT AATAT A--ATAT A-ATAT A--ATAT AATAT AATAT AATAT A--ATAT
* * *
175161 AATAT AA-AT ATTAT AATAT -ATAT TATAT AATA- CATACT ATATAAT
1 AATAT AATAT AATAT AATAT AATAT AATAT AATAT AATA-T A-AT-AT
* *
175206 AATAT AATAT AATAT AATAT -GTAA AATAT AATAT AATA
1 AATAT AATAT AATAT AATAT AATAT AATAT AATAT AATA
175244 ATACCGGACG
Statistics
Matches: 282, Mismatches: 40, Indels: 82
0.70 0.10 0.20
Matches are distributed among these distances:
4 46 0.16
5 174 0.62
6 39 0.14
7 22 0.08
8 1 0.00
ACGTcount: A:0.53, C:0.06, G:0.01, T:0.40
Consensus pattern (5 bp):
AATAT
Found at i:175787 original size:15 final size:15
Alignment explanation
Indices: 175767--175796 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
175757 AATGCATTGT
175767 AATATATATGGGTGA
1 AATATATATGGGTGA
175782 AATATATATGGGTGA
1 AATATATATGGGTGA
175797 GCATTTGGTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.27, T:0.33
Consensus pattern (15 bp):
AATATATATGGGTGA
Found at i:178420 original size:19 final size:20
Alignment explanation
Indices: 178398--178441 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
178388 TTAGCCCTCA
*
178398 ATTTTTTCAAATATTCC-TT
1 ATTTTTTCAAATAATCCTTT
* *
178417 ATTTCTTCAATTAATCCTTT
1 ATTTTTTCAAATAATCCTTT
178437 ATTTT
1 ATTTT
178442 AAGTCTGATT
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
19 14 0.70
20 6 0.30
ACGTcount: A:0.25, C:0.16, G:0.00, T:0.59
Consensus pattern (20 bp):
ATTTTTTCAAATAATCCTTT
Found at i:178779 original size:9 final size:9
Alignment explanation
Indices: 178765--178789 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
178755 AAAGAATATA
178765 ATATATAAT
1 ATATATAAT
178774 ATATATAAT
1 ATATATAAT
178783 ATATATA
1 ATATATA
178790 TATGGTTAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (9 bp):
ATATATAAT
Found at i:179661 original size:63 final size:59
Alignment explanation
Indices: 179545--179661 Score: 153
Period size: 63 Copynumber: 1.9 Consensus size: 59
179535 TAAAGAATGT
** *
179545 TTTAGGTACTTAAATGAAAATGATTATTATAGATACTTATTTTAGCAAAAAAAAATTTC
1 TTTAGGTACTTAAATGAAAAAAATTATTATAGATACCTATTTTAGCAAAAAAAAATTTC
* *
179604 TTTAGGTACTTAAATGAAAAAAATAGTATACTTTAGATACCTATTTTAGCAACAAAAA
1 TTTAGGTACTTAAATGAAAAAAAT--TAT--TATAGATACCTATTTTAGCAAAAAAAA
179662 GGGGTAAACT
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
59 22 0.45
61 3 0.06
63 24 0.49
ACGTcount: A:0.45, C:0.09, G:0.10, T:0.36
Consensus pattern (59 bp):
TTTAGGTACTTAAATGAAAAAAATTATTATAGATACCTATTTTAGCAAAAAAAAATTTC
Found at i:179769 original size:30 final size:30
Alignment explanation
Indices: 179729--179805 Score: 136
Period size: 30 Copynumber: 2.6 Consensus size: 30
179719 TGTTTAAAAA
*
179729 GTTACAAATCGGTCACTAACGTTATCATTT
1 GTTACAAATCGGTCACTAACGATATCATTT
*
179759 GTTAAAAATCGGTCACTAACGATATCATTT
1 GTTACAAATCGGTCACTAACGATATCATTT
179789 GTTACAAATCGGTCACT
1 GTTACAAATCGGTCACT
179806 CCCTGTTAAC
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 44 1.00
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.34
Consensus pattern (30 bp):
GTTACAAATCGGTCACTAACGATATCATTT
Found at i:180608 original size:27 final size:28
Alignment explanation
Indices: 180543--180608 Score: 80
Period size: 29 Copynumber: 2.4 Consensus size: 28
180533 GTTGAATATG
180543 TATAATTGTTTGCAGTTGGAATAAATGAA
1 TATAATTGTTTGCAGTTGG-ATAAATGAA
* * * *
180572 AAGAAATGTTTGCAGTTGG-TATATGAA
1 TATAATTGTTTGCAGTTGGATAAATGAA
180599 TATAATTGTT
1 TATAATTGTT
180609 GAATATATAA
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
27 14 0.47
29 16 0.53
ACGTcount: A:0.36, C:0.03, G:0.21, T:0.39
Consensus pattern (28 bp):
TATAATTGTTTGCAGTTGGATAAATGAA
Found at i:181603 original size:11 final size:11
Alignment explanation
Indices: 181587--181614 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
181577 AAATCACAAA
181587 AAATCATCTAG
1 AAATCATCTAG
181598 AAATCATCTAG
1 AAATCATCTAG
181609 AAATCA
1 AAATCA
181615 AAAGGCTTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.50, C:0.18, G:0.07, T:0.25
Consensus pattern (11 bp):
AAATCATCTAG
Found at i:182750 original size:58 final size:58
Alignment explanation
Indices: 182688--182840 Score: 148
Period size: 60 Copynumber: 2.6 Consensus size: 58
182678 CATTTCAAAA
* *
182688 TAGTCCCTAAAATTTTAAATATTTCAATTTCATCCAAACTATGACTATCATTCTATAT
1 TAGTCCCTAAACTTTTAAATATTTCAATTTCATCCAAACTATGAATATCATTCTATAT
** ** *
182746 TAGT-CCTCAAACGCTTGGATA-TTCCATTTCCATCCCCAAACTATGAATATCATTCTATAT
1 TAGTCCCT-AAACTTTTAAATATTTCAATTT-CAT--CCAAACTATGAATATCATTCTATAT
* * * * *
182806 TGGTCCCTAAACTTTTATATCTTCCAATATCATCC
1 TAGTCCCTAAACTTTTAAATATTTCAATTTCATCC
182841 CCAAATTCAT
Statistics
Matches: 73, Mismatches: 16, Indels: 12
0.72 0.16 0.12
Matches are distributed among these distances:
57 10 0.14
58 17 0.23
60 38 0.52
61 8 0.11
ACGTcount: A:0.31, C:0.24, G:0.06, T:0.39
Consensus pattern (58 bp):
TAGTCCCTAAACTTTTAAATATTTCAATTTCATCCAAACTATGAATATCATTCTATAT
Found at i:183154 original size:60 final size:60
Alignment explanation
Indices: 182970--183154 Score: 203
Period size: 60 Copynumber: 3.1 Consensus size: 60
182960 ATATAATTTA
* * * * * * * *
182970 GGATAAAATTGAAATGTTTTAAAGGTTTGGGACCAATTTAGAATGAAGATAACAGATTGG
1 GGATGAAATTGAAATGTTTAAAAGCTTAGGGACTAATTTAGAATGAAGGTCATAGATTGG
* * ** **
183030 GGATGAAAATGAAATGTTTAAAAGCTTAAGGACTAATTTAGAATGATA-GTCATATTTTAA
1 GGATGAAATTGAAATGTTTAAAAGCTTAGGGACTAATTTAGAATGA-AGGTCATAGATTGG
*
183090 GGATGAAATTGAAATGTTTAAAAACTTAGGGACTAATTT-GAAATGAAGGTCATAGATTGG
1 GGATGAAATTGAAATGTTTAAAAGCTTAGGGACTAATTTAG-AATGAAGGTCATAGATTGG
183150 GGATG
1 GGATG
183155 TGTAATGCAA
Statistics
Matches: 101, Mismatches: 21, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
59 2 0.02
60 98 0.97
61 1 0.01
ACGTcount: A:0.41, C:0.05, G:0.24, T:0.31
Consensus pattern (60 bp):
GGATGAAATTGAAATGTTTAAAAGCTTAGGGACTAATTTAGAATGAAGGTCATAGATTGG
Found at i:184781 original size:27 final size:27
Alignment explanation
Indices: 184721--184783 Score: 83
Period size: 27 Copynumber: 2.3 Consensus size: 27
184711 GGTGCTCAAA
* *
184721 GTGAGGCTGATAAGTCTAAAACTGAAG
1 GTGAGGGTGAGAAGTCTAAAACTGAAG
*
184748 GTGAGGGTGAGAAGTCTAACAA-TGAAT
1 GTGAGGGTGAGAAGTCTAA-AACTGAAG
184775 GTGAGGGTG
1 GTGAGGGTG
184784 CTAAGGGTGA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
27 30 0.94
28 2 0.06
ACGTcount: A:0.33, C:0.08, G:0.37, T:0.22
Consensus pattern (27 bp):
GTGAGGGTGAGAAGTCTAAAACTGAAG
Found at i:187014 original size:18 final size:18
Alignment explanation
Indices: 186966--187014 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 18
186956 TGTCCTATTA
*
186966 AACAACAACCTCAACAGAC
1 AACAACAA-CACAACAGAC
*
186985 AACAGCAACACAACAGAC
1 AACAACAACACAACAGAC
* *
187003 ATCAACACCACA
1 AACAACAACACA
187015 TGTAACAACA
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
18 18 0.72
19 7 0.28
ACGTcount: A:0.53, C:0.37, G:0.06, T:0.04
Consensus pattern (18 bp):
AACAACAACACAACAGAC
Found at i:187211 original size:40 final size:41
Alignment explanation
Indices: 187131--187222 Score: 100
Period size: 40 Copynumber: 2.3 Consensus size: 41
187121 ACTTTAGTTA
* *
187131 AACTTTATGTATTTTTTCATATATTGAATGGAAATATGGTC
1 AACTTTATATATTTTTTCATATATTGAATGAAAATATGGTC
* *
187172 -ACTTTATATATTTTGTT-A-ATCTTGAATGAAAATTTTGGTC
1 AACTTTATATATTTT-TTCATATATTGAATGAAAA-TATGGTC
*
187212 AAGTTTATATA
1 AACTTTATATA
187223 ACTGTAAATT
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
39 12 0.28
40 20 0.47
41 11 0.26
ACGTcount: A:0.33, C:0.07, G:0.13, T:0.48
Consensus pattern (41 bp):
AACTTTATATATTTTTTCATATATTGAATGAAAATATGGTC
Found at i:195744 original size:20 final size:20
Alignment explanation
Indices: 195716--195762 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
195706 ATTTTCAAAT
*
195716 TCGCGACGCAAATATGTAAA
1 TCGCAACGCAAATATGTAAA
* * *
195736 TCGCAACGCGAATTTGTAAT
1 TCGCAACGCAAATATGTAAA
195756 TCGCAAC
1 TCGCAAC
195763 ACATAAGTCA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.34, C:0.23, G:0.19, T:0.23
Consensus pattern (20 bp):
TCGCAACGCAAATATGTAAA
Found at i:196355 original size:19 final size:20
Alignment explanation
Indices: 196333--196386 Score: 74
Period size: 20 Copynumber: 2.8 Consensus size: 20
196323 AAATCGCAAC
196333 GCGATTTT-AGTTTCGCGTT
1 GCGATTTTAAGTTTCGCGTT
* * *
196352 GCGATTTTCATTTTTGCGTT
1 GCGATTTTAAGTTTCGCGTT
196372 GCGATTTTAAGTTTC
1 GCGATTTTAAGTTTC
196387 AGAAACTACT
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
19 8 0.28
20 21 0.72
ACGTcount: A:0.13, C:0.15, G:0.22, T:0.50
Consensus pattern (20 bp):
GCGATTTTAAGTTTCGCGTT
Found at i:197962 original size:42 final size:42
Alignment explanation
Indices: 197869--197965 Score: 122
Period size: 42 Copynumber: 2.3 Consensus size: 42
197859 GCCCACTTCT
* * * * * *
197869 AGAGCCATCACCTGATCGAGCCGATTCTATAGCTCGACACCC
1 AGAGCCATCACCTGATCGAGCCGATTATACACCTCCAAAACC
*
197911 AGAGCCATCACCTGATCGAGCCGATTATACACCTCCAAAACG
1 AGAGCCATCACCTGATCGAGCCGATTATACACCTCCAAAACC
*
197953 AGAGTCATCACCT
1 AGAGCCATCACCT
197966 ATTCCATCAC
Statistics
Matches: 47, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 47 1.00
ACGTcount: A:0.30, C:0.34, G:0.18, T:0.19
Consensus pattern (42 bp):
AGAGCCATCACCTGATCGAGCCGATTATACACCTCCAAAACC
Found at i:198129 original size:21 final size:21
Alignment explanation
Indices: 198080--198129 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 21
198070 GTTAGGGGAG
* *
198080 TTACGTGATGAGGTCAGTGCT
1 TTACGTGAGGAGGTCAGTACT
** *
198101 TTGTGTGAGGAGGTCGGTACT
1 TTACGTGAGGAGGTCAGTACT
198122 TTACGTGA
1 TTACGTGA
198130 CGACAATGGT
Statistics
Matches: 22, Mismatches: 7, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.18, C:0.12, G:0.36, T:0.34
Consensus pattern (21 bp):
TTACGTGAGGAGGTCAGTACT
Found at i:202737 original size:12 final size:12
Alignment explanation
Indices: 202716--202749 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
202706 GGTTGTGGGT
*
202716 TTTGAGATTGTG
1 TTTGATATTGTG
202728 TTTGATATTGTG
1 TTTGATATTGTG
*
202740 TTTGGTATTG
1 TTTGATATTG
202750 GAAATGTGGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.29, T:0.56
Consensus pattern (12 bp):
TTTGATATTGTG
Done.