Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005877.1 Hibiscus syriacus cultivar Beakdansim tig00013809_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  114373

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5934--5968
17
2.1
17
100
0
70
65
0
0
34
0.93
6017--6070
23
2.2
26
80
12
69
50
0
0
50
1.00
6021--6070
25
2.1
23
85
7
64
52
0
0
48
1.00
6848--6884
2
18.5
2
100
0
74
51
0
0
48
1.00
7645--7758
21
5.4
21
72
19
94
39
21
17
21
1.92
7637--7777
42
3.3
42
89
1
219
37
22
17
22
1.94
7670--7804
21
6.4
21
75
13
116
35
23
19
21
1.96
10897--10948
6
8.5
6
87
4
68
17
59
3
19
1.52
10897--10948
19
2.8
18
82
5
68
17
59
3
19
1.52
10897--10944
25
1.9
25
91
0
78
16
58
4
20
1.55
11162--11201
13
3.0
13
82
7
53
37
2
0
60
1.11
12656--13030
183
2.0
183
99
0
741
19
16
30
33
1.94
19171--19229
12
5.2
12
72
15
54
49
0
3
47
1.18
19174--19229
23
2.5
23
82
5
71
48
0
3
48
1.19
20843--20924
29
2.8
29
94
1
137
32
14
9
42
1.79
25612--25693
29
2.8
29
94
1
137
32
14
9
42
1.79
46416--46548
44
3.0
44
97
0
248
27
21
29
22
1.99
46464--46533
20
3.3
20
67
21
61
27
24
31
17
1.97
46444--46513
24
3.1
24
66
21
69
27
21
30
21
1.98
46527--46596
32
2.2
32
94
2
122
34
28
14
22
1.93
49480--49511
15
2.1
15
94
0
55
56
0
0
43
0.99
50824--50876
3
17.7
3
96
0
97
35
0
0
64
0.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51913--52092
90
2.0
90
95
0
324
33
10
17
38
1.83
61669--61694
12
2.2
12
100
0
52
38
7
38
15
1.76
64140--64874
244
3.0
245
99
0
1447
35
18
16
29
1.93
65098--65214
60
2.0
59
83
8
148
31
11
13
42
1.81
71567--71653
45
1.9
45
97
0
165
31
19
17
32
1.95
80705--80775
20
3.5
20
92
0
106
45
8
19
26
1.79
85581--85624
16
2.7
18
76
20
51
56
2
2
38
1.24
85570--85624
24
2.3
23
76
11
58
56
1
1
40
1.21
85870--85918
25
2.0
25
87
0
71
40
12
14
32
1.83
85874--85929
25
2.2
25
77
0
58
41
10
10
37
1.75
106533--106620
36
2.5
35
85
10
108
10
23
38
27
1.87
108110--108134
2
12.5
2
100
0
50
48
0
0
52
1.00
108350--108382
2
16.5
2
100
0
66
48
0
0
51
1.00

Tables:   1

The End!