genome.fa.s5879.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005879.1 Hibiscus syriacus cultivar Beakdansim tig00013811_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71084

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1729--1837	42	2.6	42	89	0	173	23	15	11	48	1.78
2473--2529	3	19.0	3	100	0	114	33	0	0	66	0.92
6789--6841	20	2.5	20	81	6	61	28	16	22	32	1.96
16814--16946	25	5.3	25	79	3	151	26	24	24	25	2.00
16815--16942	50	2.6	50	89	0	193	26	23	24	25	2.00
22053--22405	44	8.0	44	89	0	517	24	21	13	41	1.88
22206--22279	24	3.2	25	60	21	61	21	22	14	40	1.90
26328--26366	15	2.6	15	100	0	78	25	20	28	25	1.99
28999--29071	25	3.2	25	60	28	61	23	20	15	41	1.90
28978--29418	44	10.0	44	86	3	602	24	20	12	42	1.86
29307--29379	20	3.2	25	62	22	68	23	19	13	43	1.86
31443--31499	27	2.1	28	86	3	80	15	12	17	54	1.71
39118--39198	23	3.6	22	80	6	92	24	22	23	29	1.99
42950--43003	24	2.2	25	80	9	67	24	9	12	53	1.68
44509--44538	15	2.0	15	93	0	51	16	20	0	63	1.31
44782--45130	174	2.0	174	96	1	646	38	14	4	42	1.65
47227--47292	29	2.2	30	78	10	73	25	19	9	45	1.80
51542--51593	20	2.5	20	87	6	68	30	15	21	32	1.94
67039--67078	21	1.9	21	89	0	62	40	12	25	22	1.89
67768--68024	34	7.4	34	70	10	144	40	10	21	27	1.86
67854--68030	37	5.0	35	74	10	128	39	10	21	28	1.86
67493--68129	71	9.1	68	71	12	325	39	11	20	28	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67794--68115	142	2.3	143	80	10	369	40	9	21	28	1.84
68053--68214	36	4.4	35	70	11	110	43	10	16	29	1.81
68077--68214	76	1.9	72	80	8	161	44	9	15	30	1.79
69516--69549	11	3.0	11	91	4	50	38	23	0	38	1.55
70560--70594	18	1.9	18	94	0	61	34	8	31	25	1.86
70561--70601	18	2.3	18	82	0	55	39	9	24	26	1.86

Tables:   1

The End!