genome.fa.s5881.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005881.1 Hibiscus syriacus cultivar Beakdansim tig00013813_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77784

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
437--482	14	3.4	14	77	19	53	41	0	4	54	1.20
1845--1925	42	2.0	41	85	7	110	43	6	13	37	1.69
1921--1952	15	2.1	15	94	0	55	59	3	6	31	1.38
3933--3977	14	3.4	14	81	9	58	80	4	6	8	1.03
13056--13100	21	2.2	20	84	4	54	35	24	11	28	1.90
16309--16475	81	2.1	80	83	1	208	31	27	21	19	1.97
27250--27326	38	2.0	38	89	0	118	31	18	14	36	1.90
27288--27378	46	2.0	46	88	0	137	27	16	20	35	1.94
32257--32298	18	2.2	18	80	20	50	42	2	7	47	1.43
32258--32300	17	2.3	19	88	11	63	46	2	6	44	1.43
36731--36823	31	3.0	31	75	0	96	25	18	15	40	1.89
38327--38365	6	6.3	6	82	5	51	48	12	0	38	1.42
39857--39885	3	9.7	3	100	0	58	65	0	0	34	0.93
41113--41182	27	2.5	28	79	11	72	51	1	0	47	1.09
41300--41346	14	3.4	14	80	11	53	53	0	0	46	1.00
49601--49822	117	1.9	117	82	7	281	47	9	13	29	1.74
54226--54266	16	2.6	16	88	3	57	36	7	21	34	1.82
54434--54480	20	2.3	20	100	0	94	25	25	19	29	1.98
58126--58156	14	2.2	14	94	0	53	54	3	0	41	1.16
58497--58548	20	2.6	20	93	0	86	51	19	17	11	1.75
58555--58938	20	18.7	19	87	7	336	35	23	21	19	1.95
58554--58938	40	9.4	40	88	6	402	35	23	21	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58558--58938	60	6.2	60	86	6	394	36	23	21	18	1.95
59049--59087	6	6.5	6	100	0	78	33	51	15	0	1.44
62095--62137	21	2.0	21	100	0	86	58	18	9	13	1.62
63963--64048	45	1.9	45	85	4	120	38	4	2	54	1.34
64891--64955	31	2.1	31	91	0	103	24	24	13	36	1.92
66815--66954	36	3.9	35	79	5	147	36	19	21	22	1.95
66813--66954	71	2.0	72	87	4	207	37	19	21	22	1.94
68181--68320	36	3.9	36	79	10	162	37	17	22	22	1.94
68182--68320	71	1.9	72	92	4	237	38	17	21	22	1.94
69549--69688	36	3.9	36	84	5	169	37	18	22	22	1.95
69547--69688	71	2.0	72	90	4	225	38	18	21	21	1.94
70915--71056	71	2.0	71	88	4	214	39	18	21	21	1.93
70917--71056	36	3.9	36	79	9	162	38	18	21	21	1.93

Tables:   1

The End!