genome.fa.s5882.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005882.1 Hibiscus syriacus cultivar Beakdansim tig00013814_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  111598

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2072--2118	23	2.1	22	88	4	67	44	4	8	42	1.54
12102--12164	18	3.4	18	69	16	56	30	26	19	23	1.98
12736--12875	64	2.2	64	82	5	167	27	15	21	36	1.93
12777--12898	64	1.9	64	83	3	156	27	16	19	36	1.93
17375--17532	52	3.0	52	95	1	273	27	21	15	35	1.94
20238--20272	16	2.1	17	94	5	63	42	20	0	37	1.52
23831--23969	59	2.3	60	81	8	158	33	22	5	38	1.78
24139--24237	29	3.3	29	69	15	85	44	3	20	32	1.67
24106--24265	60	2.7	60	84	4	200	43	5	19	32	1.73
24127--24220	31	3.1	30	71	17	95	43	4	21	30	1.71
28498--28549	27	1.9	27	92	7	88	26	17	21	34	1.95
31173--31202	14	2.1	14	100	0	60	73	26	0	0	0.84
31181--31205	11	2.3	11	100	0	50	72	28	0	0	0.86
34096--34155	21	2.9	20	82	7	68	11	25	38	25	1.89
40265--40319	23	2.3	23	84	9	67	49	0	7	43	1.30
42418--42450	16	2.1	16	100	0	66	57	24	12	6	1.57
43444--43472	14	2.1	14	100	0	58	48	27	17	6	1.72
46050--46082	15	2.4	14	90	10	50	57	6	12	24	1.57
46067--46115	23	2.1	23	88	7	73	63	10	8	18	1.50
49704--49756	20	2.7	21	82	11	67	15	13	20	50	1.76
51356--51416	21	2.9	21	73	9	70	22	29	19	27	1.98
51356--51436	42	1.9	42	85	5	110	20	32	19	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52658--52690	13	2.4	14	95	5	59	30	0	21	48	1.50
52669--52821	65	2.4	65	87	4	213	29	2	17	50	1.60
52935--52972	20	1.9	20	100	0	76	36	21	21	21	1.95
55498--55549	24	2.2	24	82	0	59	36	19	17	26	1.94
55668--55696	12	2.4	12	100	0	58	17	0	24	58	1.38
56495--56546	20	2.6	19	85	8	77	42	15	23	19	1.89
56570--56635	20	3.3	20	74	16	64	27	12	28	31	1.92
60958--61116	25	6.5	25	70	18	93	49	13	0	36	1.46
61009--61100	12	7.6	12	77	7	96	55	10	1	32	1.42
60971--61038	13	5.5	13	74	13	63	47	13	0	39	1.43
62624--62658	15	2.3	15	95	0	61	17	22	31	28	1.96
68842--68883	22	1.9	22	95	0	75	11	33	33	21	1.90
69524--69558	15	2.3	15	95	0	61	17	22	31	28	1.96
72006--72081	1	76.0	1	73	0	53	3	10	0	85	0.72
72002--72082	7	11.6	7	82	15	73	3	12	0	83	0.76
72006--72074	10	6.5	11	80	12	65	4	10	0	85	0.72
71996--72082	31	2.8	30	83	8	104	4	12	0	82	0.81
72002--72081	41	2.0	40	87	4	117	3	11	0	85	0.73
75538--75576	3	13.0	3	100	0	78	66	0	0	33	0.92
78030--78068	16	2.4	16	95	0	69	25	23	23	28	1.99
78118--78235	4	30.5	4	69	6	55	19	1	32	46	1.60
78181--78760	2	290.0	2	73	2	232	2	13	48	35	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78173--78245	14	5.2	14	74	12	60	12	1	35	50	1.48
78171--78241	18	4.1	18	83	7	101	14	1	33	50	1.51
78150--78233	34	2.5	34	84	0	96	19	2	29	48	1.61
78165--78233	22	3.1	22	80	0	84	18	1	28	50	1.56
78173--78243	34	2.1	34	94	0	124	12	1	35	50	1.49
78129--78247	8	14.4	8	78	6	76	15	1	35	47	1.56
78720--78791	28	2.6	28	90	0	108	0	23	50	26	1.50
80385--80463	25	3.2	25	92	0	122	54	16	0	29	1.42
80395--80539	12	11.8	12	75	5	137	55	15	0	29	1.41
84892--84930	15	2.6	15	91	0	60	41	15	41	2	1.61
86024--86171	67	2.2	67	88	0	242	55	12	4	27	1.55
86103--86169	24	2.8	24	79	4	64	56	13	2	26	1.51
94236--94307	27	2.8	27	89	8	114	58	0	1	40	1.07
94646--94704	26	2.2	25	85	8	73	37	5	10	47	1.59
96400--96462	30	2.1	31	91	5	103	22	22	7	47	1.76
98234--98298	27	2.4	28	82	10	73	55	1	33	9	1.41
109971--110431	174	2.6	175	87	5	646	41	14	16	27	1.87

Tables:   1

The End!