Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01005883.1 Hibiscus syriacus cultivar Beakdansim tig00013816_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 183212
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Found at i:4286 original size:36 final size:36
Alignment explanation
Indices: 4219--4288 Score: 88
Period size: 36 Copynumber: 1.9 Consensus size: 36
4209 CACATAAATT
* * *
4219 TTAAAAATTCAAATTACATAATTAAAATAAATTTTA
1 TTAAAAATTCAAAATAAATAAATAAAATAAATTTTA
*
4255 TTAAAAATT-AAAATAAATAAATAAATGTAAATTT
1 TTAAAAATTCAAAATAAATAAATAAA-ATAAATTT
4289 CAAATGTTTG
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
35 13 0.45
36 16 0.55
ACGTcount: A:0.59, C:0.03, G:0.01, T:0.37
Consensus pattern (36 bp):
TTAAAAATTCAAAATAAATAAATAAAATAAATTTTA
Found at i:4838 original size:30 final size:30
Alignment explanation
Indices: 4802--4864 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
4792 GTGACCACAA
4802 CTTAATTAAATAAAAACAAATTAACCATAT
1 CTTAATTAAATAAAAACAAATTAACCATAT
* * *
4832 CTTAATTAAATAGAAACAAATTGATCATAT
1 CTTAATTAAATAAAAACAAATTAACCATAT
4862 CTT
1 CTT
4865 TATTTTTAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.51, C:0.13, G:0.03, T:0.33
Consensus pattern (30 bp):
CTTAATTAAATAAAAACAAATTAACCATAT
Found at i:12072 original size:51 final size:51
Alignment explanation
Indices: 11996--12096 Score: 152
Period size: 51 Copynumber: 2.0 Consensus size: 51
11986 AGTCGTTAAT
*
11996 GTTTGAACATGTGACCTTTAAGAATAA-CAATGATTCTTTTAACCACTGAGG
1 GTTTGAACATGTGACCTTTAAGAATAATC-ATGATTCCTTTAACCACTGAGG
*
12047 GTTTGAAC-TCGTGACCTTTAAGAATAATCATGGTTCCTTTAACCACTGAG
1 GTTTGAACAT-GTGACCTTTAAGAATAATCATGATTCCTTTAACCACTGAG
12097 ATAAGTTGAT
Statistics
Matches: 46, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
50 1 0.02
51 44 0.96
52 1 0.02
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.34
Consensus pattern (51 bp):
GTTTGAACATGTGACCTTTAAGAATAATCATGATTCCTTTAACCACTGAGG
Found at i:13116 original size:18 final size:18
Alignment explanation
Indices: 13073--13119 Score: 60
Period size: 18 Copynumber: 2.6 Consensus size: 18
13063 CTAATGTCAG
*
13073 ATTAATTAATTAAAATTT
1 ATTATTTAATTAAAATTT
*
13091 ATTTTTTAATTAAAATTT
1 ATTATTTAATTAAAATTT
13109 -TATATTTAATT
1 AT-TATTTAATT
13120 TGACTCGATA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
17 1 0.04
18 24 0.96
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (18 bp):
ATTATTTAATTAAAATTT
Found at i:18529 original size:31 final size:32
Alignment explanation
Indices: 18494--18555 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 32
18484 ATATTTATAA
* *
18494 ATTTTTGTTAATTAAATAT-TTATAAAAATAT
1 ATTTTTATTAATTAAAAATATTATAAAAATAT
*
18525 ATTTTTATTATTTAAAAATATTATAAAAATA
1 ATTTTTATTAATTAAAAATATTATAAAAATA
18556 ATATAATTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 16 0.59
32 11 0.41
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (32 bp):
ATTTTTATTAATTAAAAATATTATAAAAATAT
Found at i:18570 original size:33 final size:33
Alignment explanation
Indices: 18507--18570 Score: 85
Period size: 33 Copynumber: 1.9 Consensus size: 33
18497 TTTGTTAATT
** *
18507 AAATATTTATAAAAATATATTTTTATTATTTAA
1 AAATATTTATAAAAATATATAATTAATATTTAA
18540 AAATA-TTATAAAAATAATATAATTAATATTT
1 AAATATTTATAAAAAT-ATATAATTAATATTT
18571 TATTTTAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
32 10 0.37
33 17 0.63
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (33 bp):
AAATATTTATAAAAATATATAATTAATATTTAA
Found at i:27700 original size:17 final size:17
Alignment explanation
Indices: 27665--27703 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
27655 CATTCACACT
27665 GAAAAGGGAAAAGAGAG
1 GAAAAGGGAAAAGAGAG
*
27682 GAAAGAGGGAAATGA-AG
1 GAAA-AGGGAAAAGAGAG
27699 GAAAA
1 GAAAA
27704 TAGGCTGAGC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
16 1 0.05
17 10 0.50
18 9 0.45
ACGTcount: A:0.59, C:0.00, G:0.38, T:0.03
Consensus pattern (17 bp):
GAAAAGGGAAAAGAGAG
Found at i:29920 original size:14 final size:15
Alignment explanation
Indices: 29901--29933 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
29891 AAAAAGCCTA
29901 AAACC-TATAACCCT
1 AAACCATATAACCCT
29915 AAACCTATATAACCCT
1 AAACC-ATATAACCCT
29931 AAA
1 AAA
29934 TACCTTAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 5 0.29
16 12 0.71
ACGTcount: A:0.48, C:0.30, G:0.00, T:0.21
Consensus pattern (15 bp):
AAACCATATAACCCT
Found at i:38777 original size:13 final size:14
Alignment explanation
Indices: 38759--38788 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
38749 TTTTAAATGC
38759 AAATATAAT-TTTT
1 AAATATAATCTTTT
38772 AAATATAATCTTTT
1 AAATATAATCTTTT
38786 AAA
1 AAA
38789 CTTAATGTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.56
14 7 0.44
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (14 bp):
AAATATAATCTTTT
Found at i:39826 original size:18 final size:18
Alignment explanation
Indices: 39800--39837 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
39790 TTATTAATTT
39800 GATTATGACTAGTACTTA
1 GATTATGACTAGTACTTA
*
39818 GATTTTGACTAGTACTTA
1 GATTATGACTAGTACTTA
39836 GA
1 GA
39838 GGATCGACTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.32, C:0.11, G:0.18, T:0.39
Consensus pattern (18 bp):
GATTATGACTAGTACTTA
Found at i:39848 original size:19 final size:18
Alignment explanation
Indices: 39806--39850 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
39796 ATTTGATTAT
** *
39806 GACTAGTACTTAGATTTT
1 GACTAGTACTTAGAGATC
39824 GACTAGTACTTAGAGGATC
1 GACTAGTACTTAGA-GATC
39843 GACTAGTA
1 GACTAGTA
39851 GCGAAATTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
18 14 0.61
19 9 0.39
ACGTcount: A:0.31, C:0.13, G:0.22, T:0.33
Consensus pattern (18 bp):
GACTAGTACTTAGAGATC
Found at i:43599 original size:268 final size:260
Alignment explanation
Indices: 43121--43690 Score: 826
Period size: 268 Copynumber: 2.1 Consensus size: 260
43111 CTTATTCATA
43121 TATTGAATAAAAATATTTTTTTATTATTTCGGGTCGGGTTTCTAATTCATATATTCGGGTCGGGT
1 TATTGAATAAAAATATTTTTTTATTATTTCGGGTCGGGTTTCTAATTCATATATTCGGGTCGGGT
*
43186 CGGGTCGGGTGAAACTTTATTTTGGTCGGGTCGGGTCGGTTGTTTTAAGTGTGATATTCGGGTCG
66 CGGGTCGGGTGAAACTTTATTTTGGTCGGGTCGAGTCGGTTGTTTTAAGTGTGATATTCGGGTCG
* *
43251 GGTCGGGTCGAGTTCGGGTTTAGAGTGAAAAAATCCCGCCCGAAAATATATATAATTTTACCTTA
131 GGT---GTCGAGTTCGGGTTTAGAGTGAAAAAATCCCACCCGAAAAAATATATAATTTTACCTTA
* * * * *
43316 TATATTTAGGAATAATTACAATAATACCCCTATGTATATA-AT-TTTTTTCAATTAAGTCATTGT
193 TATATTTAGGAATAATTACAATAATACCCCTATATATATATATATATTTCCAATTAAGTCACTAT
43379 TTT
258 TTT
*
43382 TATTGAATAAAAATATTTTTTTTATTATTTCGGGTCAGGTCGGATTTCTAATTCTTATATTCGGG
1 TATTGAATAAAAATA-TTTTTTTATTATTTCGGGTC--G--GG-TTTCTAATTCATATATTCGGG
* * *
43447 TCGGGTCGGGTCGGGTGAAACTTTATTTTGGTCGGGTCGAGTCAGTTTTTTTTAAGTGTTATATT
60 TCGGGTCGGGTCGGGTGAAACTTTATTTTGGTCGGGTCGAGTC-GGTTGTTTTAAGTGTGATATT
* *
43512 CGGGTCGGGT-T-GGGTTCGGGTTTAGGGTG-AAAAATACCCAACCCGACCTAAAAAATATATAA
124 CGGGTCGGGTGTCGAGTTCGGGTTTAGAGTGAAAAAAT-CCC-ACCCG----AAAAAATATATAA
43574 TTTTACCTTATATATTTAGGAATAATTACAATAATACCCCTATATATATATATATATTTCCAATT
183 TTTTACCTTATATATTTAGGAATAATTACAATAATACCCCTATATATATATATATATTTCCAATT
43639 AAGTCACTATTTT
248 AAGTCACTATTTT
*
43652 TATTGAATACAAATATTTTTTTATTATTTCGGGTCGGGT
1 TATTGAATAAAAATATTTTTTTATTATTTCGGGTCGGGT
43691 GAAACTTTAT
Statistics
Matches: 279, Mismatches: 15, Indels: 27
0.87 0.05 0.08
Matches are distributed among these distances:
261 15 0.05
262 26 0.09
263 19 0.07
264 7 0.03
265 2 0.01
266 2 0.01
267 63 0.23
268 89 0.32
269 22 0.08
270 34 0.12
ACGTcount: A:0.27, C:0.12, G:0.20, T:0.41
Consensus pattern (260 bp):
TATTGAATAAAAATATTTTTTTATTATTTCGGGTCGGGTTTCTAATTCATATATTCGGGTCGGGT
CGGGTCGGGTGAAACTTTATTTTGGTCGGGTCGAGTCGGTTGTTTTAAGTGTGATATTCGGGTCG
GGTGTCGAGTTCGGGTTTAGAGTGAAAAAATCCCACCCGAAAAAATATATAATTTTACCTTATAT
ATTTAGGAATAATTACAATAATACCCCTATATATATATATATATTTCCAATTAAGTCACTATTTT
Found at i:46978 original size:55 final size:55
Alignment explanation
Indices: 46894--46998 Score: 201
Period size: 55 Copynumber: 1.9 Consensus size: 55
46884 GCCCTTCTAA
46894 GGCTGTTAGAAGGGTCTCAGTGTTTCATAAGTGTTTGTTAGATATACTTTACTAC
1 GGCTGTTAGAAGGGTCTCAGTGTTTCATAAGTGTTTGTTAGATATACTTTACTAC
*
46949 GGCTGTTATAAGGGTCTCAGTGTTTCATAAGTGTTTGTTAGATATACTTT
1 GGCTGTTAGAAGGGTCTCAGTGTTTCATAAGTGTTTGTTAGATATACTTT
46999 GTAATGATAT
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 49 1.00
ACGTcount: A:0.23, C:0.11, G:0.24, T:0.42
Consensus pattern (55 bp):
GGCTGTTAGAAGGGTCTCAGTGTTTCATAAGTGTTTGTTAGATATACTTTACTAC
Found at i:50450 original size:176 final size:176
Alignment explanation
Indices: 50153--50503 Score: 531
Period size: 176 Copynumber: 2.0 Consensus size: 176
50143 TTTTTGGGAT
*
50153 CTAATCAGCGTGTCAATGTTTCTTTACTTCCCCAACGTGTTCAGAGCAGAACAGAAACAGAGGAA
1 CTAATCAGCGTGTCAATGTTTCTTTACTTCCCCAACGTGCTCAGAGCAGAACAGAAACAGAGGAA
* *
50218 GCATGCAATGATATCCTTTAAAAGGCAAAACAATTAGACATTAACACACAGATTAGTTCCGAATG
66 GCATGCAATGATATCCTTTAAAAGGCAAAAAAATTAGACATTAACACACAGATTAGTTCCAAATG
***
50283 ATGCAATTAAATTTGGAATAAAATGCATGCACTCTTTCAACTTCAA
131 ATGCAATTAAACCAGGAATAAAATGCATGCACTCTTTCAACTTCAA
** * * * * * * *
50329 CTAATCAGTTTGTTAATGTTTCTTTATTTCCCCAATGTGCTCATAGGAGAACATAAGCAGAGGAA
1 CTAATCAGCGTGTCAATGTTTCTTTACTTCCCCAACGTGCTCAGAGCAGAACAGAAACAGAGGAA
*
50394 GCATGCAATGATATCCTTTAAAAGGCAAAAAAATTAGACATTAACACACTGATTAGTTCCAAATG
66 GCATGCAATGATATCCTTTAAAAGGCAAAAAAATTAGACATTAACACACAGATTAGTTCCAAATG
* * *
50459 ATGCAATTAAACCAGGAATTAAATGCATGCTCTTTTTCAACTTCA
131 ATGCAATTAAACCAGGAATAAAATGCATGCACTCTTTCAACTTCA
50504 TAATTACCTG
Statistics
Matches: 156, Mismatches: 19, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
176 156 1.00
ACGTcount: A:0.37, C:0.19, G:0.15, T:0.29
Consensus pattern (176 bp):
CTAATCAGCGTGTCAATGTTTCTTTACTTCCCCAACGTGCTCAGAGCAGAACAGAAACAGAGGAA
GCATGCAATGATATCCTTTAAAAGGCAAAAAAATTAGACATTAACACACAGATTAGTTCCAAATG
ATGCAATTAAACCAGGAATAAAATGCATGCACTCTTTCAACTTCAA
Found at i:52442 original size:2 final size:2
Alignment explanation
Indices: 52435--52460 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
52425 GGAGGATCTT
52435 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
52461 GGGATTTTAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:61443 original size:19 final size:20
Alignment explanation
Indices: 61411--61454 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
61401 GGGGTACATA
*
61411 ATGCGGTCTGATGCGATCCG
1 ATGCGGTCTGATGCGAGCCG
*
61431 ATGCGGT-TGATGCGGGCCG
1 ATGCGGTCTGATGCGAGCCG
61450 ATGCG
1 ATGCG
61455 TTTAGTAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.14, C:0.23, G:0.41, T:0.23
Consensus pattern (20 bp):
ATGCGGTCTGATGCGAGCCG
Found at i:62947 original size:87 final size:87
Alignment explanation
Indices: 62801--62974 Score: 348
Period size: 87 Copynumber: 2.0 Consensus size: 87
62791 CCGTGTGCTC
62801 CGGCCATTTTCCCAAAGGCGCCAGCTGTTCCTGGCATCTTCCGGTGACACTGTTTAGAATGCCTT
1 CGGCCATTTTCCCAAAGGCGCCAGCTGTTCCTGGCATCTTCCGGTGACACTGTTTAGAATGCCTT
62866 TCTGAAGAAAATAATATGGGTG
66 TCTGAAGAAAATAATATGGGTG
62888 CGGCCATTTTCCCAAAGGCGCCAGCTGTTCCTGGCATCTTCCGGTGACACTGTTTAGAATGCCTT
1 CGGCCATTTTCCCAAAGGCGCCAGCTGTTCCTGGCATCTTCCGGTGACACTGTTTAGAATGCCTT
62953 TCTGAAGAAAATAATATGGGTG
66 TCTGAAGAAAATAATATGGGTG
62975 GTGCTTTAAC
Statistics
Matches: 87, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
87 87 1.00
ACGTcount: A:0.23, C:0.24, G:0.24, T:0.29
Consensus pattern (87 bp):
CGGCCATTTTCCCAAAGGCGCCAGCTGTTCCTGGCATCTTCCGGTGACACTGTTTAGAATGCCTT
TCTGAAGAAAATAATATGGGTG
Found at i:65912 original size:18 final size:18
Alignment explanation
Indices: 65889--65925 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
65879 TATGGCTATG
65889 GATCATGAGGATTTACAT
1 GATCATGAGGATTTACAT
65907 GATCATGAGGATTTACAT
1 GATCATGAGGATTTACAT
65925 G
1 G
65926 CATAAATCCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.32
Consensus pattern (18 bp):
GATCATGAGGATTTACAT
Found at i:67121 original size:21 final size:21
Alignment explanation
Indices: 67096--67177 Score: 103
Period size: 21 Copynumber: 4.0 Consensus size: 21
67086 GCAAATTCGC
67096 GTTGAAAATCGCGTTGCGATG
1 GTTGAAAATCGCGTTGCGATG
67117 GTTGAAAATCGCGTTGCGAT-
1 GTTGAAAATCGCGTTGCGATG
* ** ** *
67137 TTTCCATTTCGCGTTTCGATG
1 GTTGAAAATCGCGTTGCGATG
67158 GTTGAAAATCGCGTTGCGAT
1 GTTGAAAATCGCGTTGCGAT
67178 TTTCCATTTC
Statistics
Matches: 48, Mismatches: 12, Indels: 2
0.77 0.19 0.03
Matches are distributed among these distances:
20 14 0.29
21 34 0.71
ACGTcount: A:0.21, C:0.17, G:0.28, T:0.34
Consensus pattern (21 bp):
GTTGAAAATCGCGTTGCGATG
Found at i:67149 original size:41 final size:41
Alignment explanation
Indices: 67104--67200 Score: 185
Period size: 41 Copynumber: 2.4 Consensus size: 41
67094 GCGTTGAAAA
67104 TCGCGTTGCGATGGTTGAAAATCGCGTTGCGATTTTCCATT
1 TCGCGTTGCGATGGTTGAAAATCGCGTTGCGATTTTCCATT
*
67145 TCGCGTTTCGATGGTTGAAAATCGCGTTGCGATTTTCCATT
1 TCGCGTTGCGATGGTTGAAAATCGCGTTGCGATTTTCCATT
67186 TCGCGTTGCGATGGT
1 TCGCGTTGCGATGGT
67201 CTACAGTTGT
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 54 1.00
ACGTcount: A:0.15, C:0.20, G:0.28, T:0.37
Consensus pattern (41 bp):
TCGCGTTGCGATGGTTGAAAATCGCGTTGCGATTTTCCATT
Found at i:67150 original size:20 final size:20
Alignment explanation
Indices: 67125--67197 Score: 83
Period size: 20 Copynumber: 3.6 Consensus size: 20
67115 TGGTTGAAAA
67125 TCGCGTTGCGATTTTCCATT
1 TCGCGTTGCGATTTTCCATT
* * ** **
67145 TCGCGTTTCGATGGTTGAAAA
1 TCGCGTTGCGAT-TTTCCATT
67166 TCGCGTTGCGATTTTCCATT
1 TCGCGTTGCGATTTTCCATT
67186 TCGCGTTGCGAT
1 TCGCGTTGCGAT
67198 GGTCTACAGT
Statistics
Matches: 40, Mismatches: 12, Indels: 2
0.74 0.22 0.04
Matches are distributed among these distances:
20 26 0.65
21 14 0.35
ACGTcount: A:0.14, C:0.22, G:0.25, T:0.40
Consensus pattern (20 bp):
TCGCGTTGCGATTTTCCATT
Found at i:75474 original size:29 final size:32
Alignment explanation
Indices: 75435--75494 Score: 83
Period size: 29 Copynumber: 2.0 Consensus size: 32
75425 AAAAAATATA
75435 AAACAATGAATTTTCG-TT-A-TTTATTTTTTT
1 AAACAATGAATTTT-GTTTAATTTTATTTTTTT
75465 AAAC-ATGAATTTTGTTTAATTTTATTTTTT
1 AAACAATGAATTTTGTTTAATTTTATTTTTT
75495 AAATATTTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
28 1 0.04
29 11 0.41
30 5 0.19
31 10 0.37
ACGTcount: A:0.30, C:0.05, G:0.07, T:0.58
Consensus pattern (32 bp):
AAACAATGAATTTTGTTTAATTTTATTTTTTT
Found at i:75502 original size:16 final size:16
Alignment explanation
Indices: 75483--75536 Score: 73
Period size: 16 Copynumber: 3.7 Consensus size: 16
75473 ATTTTGTTTA
75483 ATTTTATTTTTTAAAT
1 ATTTTATTTTTTAAAT
75499 ATTTTA-TTTTT--A-
1 ATTTTATTTTTTAAAT
75511 A-TTTATTTTTTAAAT
1 ATTTTATTTTTTAAAT
75526 ATTTTATTTTT
1 ATTTTATTTTT
75537 AATTTATTTG
Statistics
Matches: 33, Mismatches: 0, Indels: 10
0.77 0.00 0.23
Matches are distributed among these distances:
11 4 0.12
12 6 0.18
13 1 0.03
14 1 0.03
15 6 0.18
16 15 0.45
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (16 bp):
ATTTTATTTTTTAAAT
Found at i:75523 original size:27 final size:27
Alignment explanation
Indices: 75479--75550 Score: 126
Period size: 27 Copynumber: 2.6 Consensus size: 27
75469 ATGAATTTTG
75479 TTTAATTTTATTTTTTAAATATTTTATT
1 TTTAA-TTTATTTTTTAAATATTTTATT
75507 TTTAATTTATTTTTTAAATATTTTATT
1 TTTAATTTATTTTTTAAATATTTTATT
*
75534 TTTAATTTATTTGTTAA
1 TTTAATTTATTTTTTAA
75551 GTGAGCTGGT
Statistics
Matches: 43, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
27 38 0.88
28 5 0.12
ACGTcount: A:0.29, C:0.00, G:0.01, T:0.69
Consensus pattern (27 bp):
TTTAATTTATTTTTTAAATATTTTATT
Found at i:75545 original size:16 final size:15
Alignment explanation
Indices: 75483--75538 Score: 73
Period size: 15 Copynumber: 3.9 Consensus size: 15
75473 ATTTTGTTTA
75483 ATTTTATTTTTTAAAT
1 ATTTTA-TTTTTAAAT
75499 ATTTTATTTTT-AAT
1 ATTTTATTTTTAAAT
*
75513 -TTAT-TTTTTAAAT
1 ATTTTATTTTTAAAT
75526 ATTTTATTTTTAA
1 ATTTTATTTTTAA
75539 TTTATTTGTT
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
12 5 0.14
13 6 0.17
14 6 0.17
15 12 0.34
16 6 0.17
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (15 bp):
ATTTTATTTTTAAAT
Found at i:82439 original size:60 final size:59
Alignment explanation
Indices: 82339--82459 Score: 179
Period size: 60 Copynumber: 2.0 Consensus size: 59
82329 ACATGTTATT
* * * *
82339 ATGGAATCCGACTTATTTTTGAATTTGAATGTATATTTTTTTCAGGAGGTTCCACGCTGC
1 ATGGAATCCGACTTACTTTTGAATTTGAATGTATA-GTTTTTCAGGAGCTTCCACGCCGC
* *
82399 ATGGAATCCGACTTACTTTTGCATTTGAATGTGTAGTTTTTCAGGAGCTTCCACGCCGC
1 ATGGAATCCGACTTACTTTTGAATTTGAATGTATAGTTTTTCAGGAGCTTCCACGCCGC
82458 AT
1 AT
82460 ATGTTGATGC
Statistics
Matches: 55, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
59 23 0.42
60 32 0.58
ACGTcount: A:0.22, C:0.18, G:0.21, T:0.39
Consensus pattern (59 bp):
ATGGAATCCGACTTACTTTTGAATTTGAATGTATAGTTTTTCAGGAGCTTCCACGCCGC
Found at i:83546 original size:29 final size:29
Alignment explanation
Indices: 83481--83547 Score: 98
Period size: 29 Copynumber: 2.3 Consensus size: 29
83471 TGATCGATAA
* * *
83481 GAAAACACGGAGATGCCGATAACACAACC
1 GAAAATACGGAGATACCGATAAAACAACC
83510 GAAAATACGGAGATACCGATAAAACAACC
1 GAAAATACGGAGATACCGATAAAACAACC
*
83539 GAAGATACG
1 GAAAATACG
83548 TAAAAGCTGA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.48, C:0.22, G:0.21, T:0.09
Consensus pattern (29 bp):
GAAAATACGGAGATACCGATAAAACAACC
Found at i:84394 original size:27 final size:27
Alignment explanation
Indices: 84364--84420 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 27
84354 GTGTTCCTGT
* * *
84364 TTCCTCCTTGCCCACTTCTGTTAGTTC
1 TTCCCCCTTGCCCACTGCTGTTAGCTC
*
84391 TTCCCCCTTGCTCACTGCTGTTAGCTC
1 TTCCCCCTTGCCCACTGCTGTTAGCTC
84418 TTC
1 TTC
84421 GCCTTTATGG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.07, C:0.39, G:0.12, T:0.42
Consensus pattern (27 bp):
TTCCCCCTTGCCCACTGCTGTTAGCTC
Found at i:90991 original size:20 final size:20
Alignment explanation
Indices: 90966--91018 Score: 81
Period size: 20 Copynumber: 2.6 Consensus size: 20
90956 GATTTTCCAG
*
90966 AATCGCAACGCGAATATGA-A
1 AATCGCAACGCGAACAT-ATA
90986 AATCGCAACGCGAACATATA
1 AATCGCAACGCGAACATATA
91006 AATCGCAACGCGA
1 AATCGCAACGCGA
91019 TTCTGACTAT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
19 1 0.03
20 30 0.97
ACGTcount: A:0.43, C:0.25, G:0.19, T:0.13
Consensus pattern (20 bp):
AATCGCAACGCGAACATATA
Found at i:91071 original size:20 final size:21
Alignment explanation
Indices: 91027--91077 Score: 86
Period size: 21 Copynumber: 2.5 Consensus size: 21
91017 GATTCTGACT
91027 ATCGCAACGAGTATCCGTAAA
1 ATCGCAACGAGTATCCGTAAA
*
91048 ATCGCAACGCGTATCCGT-AA
1 ATCGCAACGAGTATCCGTAAA
91068 ATCGCAACGA
1 ATCGCAACGA
91078 CAATACGTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
20 11 0.39
21 17 0.61
ACGTcount: A:0.35, C:0.27, G:0.20, T:0.18
Consensus pattern (21 bp):
ATCGCAACGAGTATCCGTAAA
Found at i:91086 original size:20 final size:20
Alignment explanation
Indices: 91027--91088 Score: 72
Period size: 20 Copynumber: 3.0 Consensus size: 20
91017 GATTCTGACT
*
91027 ATCGCAACGAGTATCCGTAAA
1 ATCGCAACGACTATCCGT-AA
91048 ATCGCAACG-CGTATCCGTAA
1 ATCGCAACGAC-TATCCGTAA
* *
91068 ATCGCAACGACAATACGTAA
1 ATCGCAACGACTATCCGTAA
91088 A
1 A
91089 GCTAGATTTG
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
20 19 0.53
21 17 0.47
ACGTcount: A:0.39, C:0.26, G:0.18, T:0.18
Consensus pattern (20 bp):
ATCGCAACGACTATCCGTAA
Found at i:91561 original size:20 final size:20
Alignment explanation
Indices: 91536--91718 Score: 188
Period size: 20 Copynumber: 9.1 Consensus size: 20
91526 GGAAGACCGT
91536 CGTATCCGTAAATCGCAACG
1 CGTATCCGTAAATCGCAACG
91556 CGTATCCGTAAATCGCAACG
1 CGTATCCGTAAATCGCAACG
* * *
91576 AGAATACGTAAATCGCAACG
1 CGTATCCGTAAATCGCAACG
* **
91596 CATATATGTAAATCGCAACG
1 CGTATCCGTAAATCGCAACG
* * * *
91616 AGAATACGTAAATCGCAATG
1 CGTATCCGTAAATCGCAACG
**
91636 CGTATCCGTAAATCGCAATA
1 CGTATCCGTAAATCGCAACG
*
91656 CGTATCCGTAAATCACAACG
1 CGTATCCGTAAATCGCAACG
* * * *
91676 AC-AATACGTAAAATCACAACA
1 -CGTATCCGT-AAATCGCAACG
91697 CGTATCCGTAAATCGCAACG
1 CGTATCCGTAAATCGCAACG
91717 CG
1 CG
91719 ATTTTTAAAG
Statistics
Matches: 134, Mismatches: 26, Indels: 6
0.81 0.16 0.04
Matches are distributed among these distances:
20 118 0.88
21 16 0.12
ACGTcount: A:0.38, C:0.25, G:0.17, T:0.20
Consensus pattern (20 bp):
CGTATCCGTAAATCGCAACG
Found at i:91994 original size:19 final size:18
Alignment explanation
Indices: 91967--92063 Score: 84
Period size: 19 Copynumber: 5.6 Consensus size: 18
91957 ATTTCCCAAA
91967 TCGCGTTGCGATTTTCATT
1 TCGC-TTGCGATTTTCATT
**
91986 TCGCTTTGCGA--TTC-CC
1 TCGC-TTGCGATTTTCATT
92002 TCG-TTGCGATTTTCATT
1 TCGCTTGCGATTTTCATT
92019 TCGCATTGCGA--TTC-TT
1 TCGC-TTGCGATTTTCATT
92035 TCG-TTGCGATTTTCATT
1 TCGCTTGCGATTTTCATT
92052 TCGCATTGCGAT
1 TCGC-TTGCGAT
92064 AGTCATTTTT
Statistics
Matches: 63, Mismatches: 5, Indels: 20
0.72 0.06 0.23
Matches are distributed among these distances:
14 12 0.19
16 14 0.22
17 14 0.22
19 23 0.37
ACGTcount: A:0.11, C:0.24, G:0.20, T:0.45
Consensus pattern (18 bp):
TCGCTTGCGATTTTCATT
Found at i:91998 original size:39 final size:34
Alignment explanation
Indices: 91947--92063 Score: 148
Period size: 33 Copynumber: 3.4 Consensus size: 34
91937 CGCGATTCTA
91947 TCGCATTGCGATTTCCCAAATCGCGTTGCGATTTTCATT
1 TCGCATTGCGATTTCCC---T--CGTTGCGATTTTCATT
*
91986 TCGCTTTGCGA-TTCCCTCGTTGCGATTTTCATT
1 TCGCATTGCGATTTCCCTCGTTGCGATTTTCATT
**
92019 TCGCATTGCGA-TTCTTTCGTTGCGATTTTCATT
1 TCGCATTGCGATTTCCCTCGTTGCGATTTTCATT
92052 TCGCATTGCGAT
1 TCGCATTGCGAT
92064 AGTCATTTTT
Statistics
Matches: 73, Mismatches: 4, Indels: 7
0.87 0.05 0.08
Matches are distributed among these distances:
33 57 0.78
35 1 0.01
38 5 0.07
39 10 0.14
ACGTcount: A:0.14, C:0.25, G:0.19, T:0.43
Consensus pattern (34 bp):
TCGCATTGCGATTTCCCTCGTTGCGATTTTCATT
Found at i:92008 original size:33 final size:33
Alignment explanation
Indices: 91970--92063 Score: 161
Period size: 33 Copynumber: 2.8 Consensus size: 33
91960 TCCCAAATCG
*
91970 CGTTGCGATTTTCATTTCGCTTTGCGATTCCCT
1 CGTTGCGATTTTCATTTCGCATTGCGATTCCCT
**
92003 CGTTGCGATTTTCATTTCGCATTGCGATTCTTT
1 CGTTGCGATTTTCATTTCGCATTGCGATTCCCT
92036 CGTTGCGATTTTCATTTCGCATTGCGAT
1 CGTTGCGATTTTCATTTCGCATTGCGAT
92064 AGTCATTTTT
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 58 1.00
ACGTcount: A:0.12, C:0.23, G:0.19, T:0.46
Consensus pattern (33 bp):
CGTTGCGATTTTCATTTCGCATTGCGATTCCCT
Found at i:92071 original size:19 final size:17
Alignment explanation
Indices: 92013--92063 Score: 63
Period size: 17 Copynumber: 3.1 Consensus size: 17
92003 CGTTGCGATT
92013 TTCATTTCGCATTGCGA
1 TTCATTTCGCATTGCGA
92030 TTC-TTTCG--TTGCGA
1 TTCATTTCGCATTGCGA
92044 TTTTCATTTCGCATTGCGA
1 --TTCATTTCGCATTGCGA
92063 T
1 T
92064 AGTCATTTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 10
0.74 0.00 0.26
Matches are distributed among these distances:
14 6 0.21
16 8 0.28
17 9 0.31
19 6 0.21
ACGTcount: A:0.14, C:0.22, G:0.18, T:0.47
Consensus pattern (17 bp):
TTCATTTCGCATTGCGA
Found at i:94006 original size:94 final size:93
Alignment explanation
Indices: 93855--94076 Score: 345
Period size: 94 Copynumber: 2.4 Consensus size: 93
93845 TGTTTCAAAC
* * *
93855 TTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATAC
1 TTAGCAAAATTGACAGCAACCGAATAAATTTAC-TTCAACCAAAAGACAAAACAAAGACAAATAC
* *
93920 TAACTTCACATTGTTAAAGAATATACAGT
65 TAACTTCACAGTGTTAAAGAATAAACAGT
*
93949 TTATCAAAATTGACAGCAACCGAATAAATTTACTTCAACCAAAAGACAAAACAAAAGACAAATAC
1 TTAGCAAAATTGACAGCAACCGAATAAATTTACTTCAACCAAAAGACAAAAC-AAAGACAAATAC
94014 TAACTTCACAGTGTTAAAGAATAAACAGT
65 TAACTTCACAGTGTTAAAGAATAAACAGT
** *
94043 TTAGCAGTATTGTCAGCAACCGAATAAATTTACT
1 TTAGCAAAATTGACAGCAACCGAATAAATTTACT
94077 AAGCAATCTA
Statistics
Matches: 117, Mismatches: 10, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
93 19 0.16
94 98 0.84
ACGTcount: A:0.47, C:0.18, G:0.11, T:0.23
Consensus pattern (93 bp):
TTAGCAAAATTGACAGCAACCGAATAAATTTACTTCAACCAAAAGACAAAACAAAGACAAATACT
AACTTCACAGTGTTAAAGAATAAACAGT
Found at i:95783 original size:40 final size:38
Alignment explanation
Indices: 95739--95850 Score: 119
Period size: 33 Copynumber: 3.0 Consensus size: 38
95729 TCTTTTGGTT
95739 GAAATGAAAATCGCAACGAGAGAATGAAAATCGCAATGCG
1 GAAATGAAAATCGCAACG-GAGAA-GAAAATCGCAATGCG
** *
95779 GAAATGACTATCGCAAC-GAG-AG--AATCGCAACGC-
1 GAAATGAAAATCGCAACGGAGAAGAAAATCGCAATGCG
95812 GAAATGAAAATCGCAACGCGA-AAGGAAAATCGCAATGCG
1 GAAATGAAAATCGCAACG-GAGAA-GAAAATCGCAATGCG
95851 ATTTTGGTTT
Statistics
Matches: 59, Mismatches: 6, Indels: 15
0.74 0.08 0.19
Matches are distributed among these distances:
33 15 0.25
34 10 0.17
35 3 0.05
36 2 0.03
37 1 0.02
38 13 0.22
40 15 0.25
ACGTcount: A:0.45, C:0.19, G:0.25, T:0.12
Consensus pattern (38 bp):
GAAATGAAAATCGCAACGGAGAAGAAAATCGCAATGCG
Found at i:95825 original size:19 final size:19
Alignment explanation
Indices: 95739--95851 Score: 110
Period size: 19 Copynumber: 6.1 Consensus size: 19
95729 TCTTTTGGTT
*
95739 GAAATGAAAATCGCAACGA
1 GAAATGAAAATCGCAACGC
*
95758 GAGAATGAAAATCGCAATGC
1 GA-AATGAAAATCGCAACGC
**
95778 GGAAATGACTATCGCAA--C
1 -GAAATGAAAATCGCAACGC
*
95796 G--A-GAGAATCGCAACGC
1 GAAATGAAAATCGCAACGC
95812 GAAATGAAAATCGCAACGC
1 GAAATGAAAATCGCAACGC
* *
95831 GAAAGGAAAATCGCAATGC
1 GAAATGAAAATCGCAACGC
95850 GA
1 GA
95852 TTTTGGTTTC
Statistics
Matches: 78, Mismatches: 9, Indels: 14
0.77 0.09 0.14
Matches are distributed among these distances:
14 9 0.12
15 1 0.01
16 2 0.03
17 1 0.01
18 2 0.03
19 34 0.44
20 27 0.35
21 2 0.03
ACGTcount: A:0.45, C:0.19, G:0.25, T:0.12
Consensus pattern (19 bp):
GAAATGAAAATCGCAACGC
Found at i:95912 original size:21 final size:21
Alignment explanation
Indices: 95871--95914 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
95861 CGCGTTGCGA
**
95871 TTCTCTCGTTGCGATTTTCAT
1 TTCTCTCGTTGCGATAGTCAT
95892 TTCTCTCGTTGCGATAGTCAT
1 TTCTCTCGTTGCGATAGTCAT
95913 TT
1 TT
95915 TCGTGTTTCG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.11, C:0.23, G:0.16, T:0.50
Consensus pattern (21 bp):
TTCTCTCGTTGCGATAGTCAT
Found at i:96064 original size:20 final size:19
Alignment explanation
Indices: 96039--96109 Score: 79
Period size: 20 Copynumber: 3.5 Consensus size: 19
96029 TTCTAAACTT
96039 AAAATCGCAACATGAAAATG
1 AAAATCGCAACA-GAAAATG
*
96059 AAAATCGCAACACAAAAATG
1 AAAATCGCAACA-GAAAATG
**
96079 ACTATCGCAACGAGAGAAATG
1 AAAATCGCAAC-AGA-AAATG
96100 AAAATCGCAA
1 AAAATCGCAA
96110 TGAGATAATC
Statistics
Matches: 42, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
20 28 0.67
21 14 0.33
ACGTcount: A:0.54, C:0.18, G:0.15, T:0.13
Consensus pattern (19 bp):
AAAATCGCAACAGAAAATG
Found at i:96164 original size:19 final size:20
Alignment explanation
Indices: 96142--96196 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
96132 GAAAATCACA
*
96142 TTGCGATTTTAATTTC-GCG
1 TTGCGATTTTCATTTCTGCG
**
96161 TTGCGATAGTCATTTCTGCG
1 TTGCGATTTTCATTTCTGCG
96181 TTGCGATTTTCATTTC
1 TTGCGATTTTCATTTC
96197 AACCAAAAGA
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
19 13 0.43
20 17 0.57
ACGTcount: A:0.15, C:0.18, G:0.20, T:0.47
Consensus pattern (20 bp):
TTGCGATTTTCATTTCTGCG
Found at i:98001 original size:82 final size:82
Alignment explanation
Indices: 97864--98020 Score: 269
Period size: 82 Copynumber: 1.9 Consensus size: 82
97854 TAGATTGCTT
*
97864 AGTAAATTTATTCGGTTGCTGCCAATACTACTAAAATGTTTATTCTTTAACACTGTGAAGTTAGT
1 AGTAAATTTATTCGGTTGCTGCCAATACTACTAAAATGTATATTCTTTAACACTGTGAAGTTAGT
97929 ATTTGTCTTTTGGTTGA
66 ATTTGTCTTTTGGTTGA
* * * *
97946 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAATTGTATATTCTTTAACACTGTGAATTTAGT
1 AGTAAATTTATTCGGTTGCTGCCAATACTACTAAAATGTATATTCTTTAACACTGTGAAGTTAGT
98011 ATTTGTCTTT
66 ATTTGTCTTT
98021 GTTTTGTCTT
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
82 70 1.00
ACGTcount: A:0.26, C:0.13, G:0.16, T:0.45
Consensus pattern (82 bp):
AGTAAATTTATTCGGTTGCTGCCAATACTACTAAAATGTATATTCTTTAACACTGTGAAGTTAGT
ATTTGTCTTTTGGTTGA
Found at i:98370 original size:21 final size:21
Alignment explanation
Indices: 98346--98412 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
98336 TCATTCCTTG
98346 AGAGTCCCCTCCCACCGTTCA
1 AGAGTCCCCTCCCACCGTTCA
* * ** * *
98367 AGAGGCCACTGTCATCGTTGA
1 AGAGTCCCCTCCCACCGTTCA
*
98388 AGAGAT-CCCTCCCACCATTCA
1 AGAG-TCCCCTCCCACCGTTCA
98409 AGAG
1 AGAG
98413 CCCGATTCAC
Statistics
Matches: 32, Mismatches: 13, Indels: 2
0.68 0.28 0.04
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.25, C:0.36, G:0.19, T:0.19
Consensus pattern (21 bp):
AGAGTCCCCTCCCACCGTTCA
Found at i:98370 original size:42 final size:42
Alignment explanation
Indices: 98324--98412 Score: 110
Period size: 42 Copynumber: 2.1 Consensus size: 42
98314 CCTATCTTTG
* *
98324 AAGAGGCCCCTATCATTCCTTG-AGAG-TCCCCTCCCACCGTTC
1 AAGAGGCCACTATCA-TCCTTGAAGAGAT-CCCTCCCACCATTC
* *
98366 AAGAGGCCACTGTCATCGTTGAAGAGATCCCTCCCACCATTC
1 AAGAGGCCACTATCATCCTTGAAGAGATCCCTCCCACCATTC
98408 AAGAG
1 AAGAG
98413 CCCGATTCAC
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
41 5 0.12
42 35 0.85
43 1 0.02
ACGTcount: A:0.25, C:0.35, G:0.19, T:0.21
Consensus pattern (42 bp):
AAGAGGCCACTATCATCCTTGAAGAGATCCCTCCCACCATTC
Found at i:101528 original size:12 final size:12
Alignment explanation
Indices: 101513--101545 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
101503 TGGGGATTTC
101513 TTCTTCTTCTTT
1 TTCTTCTTCTTT
*
101525 TTCTTCTTATTT
1 TTCTTCTTCTTT
101537 TTCTTCTTC
1 TTCTTCTTC
101546 AGTGTTATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.03, C:0.24, G:0.00, T:0.73
Consensus pattern (12 bp):
TTCTTCTTCTTT
Found at i:101754 original size:24 final size:24
Alignment explanation
Indices: 101720--101773 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
101710 CTGAAAAATC
101720 ATCAAAATCCGAGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
* *
101744 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
101768 ATCAAA
1 ATCAAA
101774 TTTCGAATAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.41, C:0.20, G:0.19, T:0.20
Consensus pattern (24 bp):
ATCAAAATCCGAGTATTGACCAAG
Found at i:101979 original size:31 final size:31
Alignment explanation
Indices: 101944--102008 Score: 121
Period size: 31 Copynumber: 2.1 Consensus size: 31
101934 ATAATATTTG
101944 ATTGGTGATGAAATTGTGGTAGAACCATTAA
1 ATTGGTGATGAAATTGTGGTAGAACCATTAA
*
101975 ATTGGTGATGAAATTGTGGTGGAACCATTAA
1 ATTGGTGATGAAATTGTGGTAGAACCATTAA
102006 ATT
1 ATT
102009 TTGAGCACCA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.34, C:0.06, G:0.26, T:0.34
Consensus pattern (31 bp):
ATTGGTGATGAAATTGTGGTAGAACCATTAA
Found at i:102705 original size:21 final size:21
Alignment explanation
Indices: 102681--102720 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
102671 AATCGCTTTG
102681 CGAATTAGGAAAATCGCAACA
1 CGAATTAGGAAAATCGCAACA
* *
102702 CGAATTTGGGAAATCGCAA
1 CGAATTAGGAAAATCGCAA
102721 TGCGATAGTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.42, C:0.17, G:0.23, T:0.17
Consensus pattern (21 bp):
CGAATTAGGAAAATCGCAACA
Found at i:103697 original size:4 final size:4
Alignment explanation
Indices: 103685--103764 Score: 88
Period size: 4 Copynumber: 20.0 Consensus size: 4
103675 ACATACATAC
* * *
103685 ATAT TTAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT GTAT ATGT
1 ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT
* * * * *
103733 ATAT GTAT ATGT ATAT GTAT GTAT GTAT ATAT
1 ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT
103765 TTCATAAAAG
Statistics
Matches: 64, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
4 64 1.00
ACGTcount: A:0.40, C:0.00, G:0.09, T:0.51
Consensus pattern (4 bp):
ATAT
Found at i:103699 original size:6 final size:6
Alignment explanation
Indices: 103685--103764 Score: 88
Period size: 6 Copynumber: 13.3 Consensus size: 6
103675 ACATACATAC
* * *
103685 ATATTT ATATAT ATATAT ATATAT ATATAT ATATAT ATATGT ATATGT
1 ATATAT ATATAT ATATAT ATATAT ATATAT ATATAT ATATAT ATATAT
* * * * *
103733 ATATGT ATATGT ATATGT ATGTAT GTATAT AT
1 ATATAT ATATAT ATATAT ATATAT ATATAT AT
103765 TTCATAAAAG
Statistics
Matches: 67, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
6 67 1.00
ACGTcount: A:0.40, C:0.00, G:0.09, T:0.51
Consensus pattern (6 bp):
ATATAT
Found at i:111692 original size:17 final size:17
Alignment explanation
Indices: 111645--111700 Score: 57
Period size: 16 Copynumber: 3.5 Consensus size: 17
111635 AAATACTCAT
111645 TATTAA-AATATT-TAA
1 TATTAATAATATTATAA
*
111660 TATTACAT-ATAATATAA
1 TATTA-ATAATATTATAA
*
111677 TTTTAATAATATTAT-A
1 TATTAATAATATTATAA
111693 TATTAATA
1 TATTAATA
111701 TATACCTAGA
Statistics
Matches: 33, Mismatches: 4, Indels: 7
0.75 0.09 0.16
Matches are distributed among these distances:
15 5 0.15
16 15 0.45
17 13 0.39
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (17 bp):
TATTAATAATATTATAA
Found at i:111770 original size:26 final size:29
Alignment explanation
Indices: 111716--111776 Score: 74
Period size: 26 Copynumber: 2.2 Consensus size: 29
111706 CTAGATATAT
* *
111716 TATAATAATATATGATATTATATTTTTAA
1 TATAATAATATATGATATTAAATTATTAA
*
111745 TCTAATAATATAT-A-A-TAAATTATTAA
1 TATAATAATATATGATATTAAATTATTAA
111771 TATAAT
1 TATAAT
111777 TCATATTATG
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
26 14 0.50
27 1 0.04
28 1 0.04
29 12 0.43
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.48
Consensus pattern (29 bp):
TATAATAATATATGATATTAAATTATTAA
Found at i:111869 original size:19 final size:19
Alignment explanation
Indices: 111831--111876 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
111821 TAATAATGAG
*
111831 TAATATTAATTTATATATT
1 TAATATTAATTAATATATT
111850 TAATATTAATATAATA-ATT
1 TAATATTAAT-TAATATATT
*
111869 TAGTATTA
1 TAATATTA
111877 TGTTAATAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 20 0.83
20 4 0.17
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (19 bp):
TAATATTAATTAATATATT
Found at i:111883 original size:30 final size:27
Alignment explanation
Indices: 111837--111898 Score: 72
Period size: 30 Copynumber: 2.2 Consensus size: 27
111827 TGAGTAATAT
*
111837 TAATTTATATATTTAATATTAATA-TAA
1 TAATTTATATATTTAATA-AAATACTAA
111864 TAATTTAGTATTATGTTAATAAAATACTAA
1 TAATTTA-TA-TAT-TTAATAAAATACTAA
111894 TAATT
1 TAATT
111899 AAAATTAGGG
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
27 7 0.23
28 2 0.07
29 7 0.23
30 14 0.47
ACGTcount: A:0.47, C:0.02, G:0.03, T:0.48
Consensus pattern (27 bp):
TAATTTATATATTTAATAAAATACTAA
Found at i:118085 original size:229 final size:227
Alignment explanation
Indices: 117680--118128 Score: 772
Period size: 229 Copynumber: 2.0 Consensus size: 227
117670 ATAAATTATC
* * * * *
117680 TATCCTTTTTATAAAAGTGTCTATACTTATTTCAGTGTGAAAATATATTTATTATTATCTTTAGT
1 TATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAACATATTTATTATTATATTTAGT
* **
117745 TAATATTGTTAAATTTAAAATCTAAATAATATTTTATAAAATATCAAAACTATCAAATAATTTTT
66 TAATATTGTTAAATTTAAAATCTAAATAATATTTTATAAAATATCAAAACAATCAAATAAAATTT
117810 TGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTG
131 TGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTG
117875 AAACATAAATTACATAACTTTCAAAAAAGTATA
196 AAACATAAATTACATAACTTT-AAAAAAGTATA
*
117908 TATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTTGAAAACATATTTATTATTATATTTGG
1 TATCATTTTTATAAAAGTGTCCATACTTATTTCACTG-TGAAAACATATTTATTATTATATTTAG
*
117973 TTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAAAATT
65 TTAATATTGTTAAATTTAAAATCTAAATAATATTTTATAAAATATCAAAACAATCAAATAAAATT
* *
118038 TTGTGTAAATTAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAATAAATT
130 TTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATT
118103 GAAACATAAATTACATAACTTTAAAA
195 GAAACATAAATTACATAACTTTAAAA
118129 GCAGTTTTAA
Statistics
Matches: 208, Mismatches: 12, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
228 38 0.18
229 170 0.82
ACGTcount: A:0.45, C:0.08, G:0.08, T:0.40
Consensus pattern (227 bp):
TATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAACATATTTATTATTATATTTAGT
TAATATTGTTAAATTTAAAATCTAAATAATATTTTATAAAATATCAAAACAATCAAATAAAATTT
TGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTG
AAACATAAATTACATAACTTTAAAAAAGTATA
Found at i:118217 original size:20 final size:19
Alignment explanation
Indices: 118194--118239 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 19
118184 CGATATACCA
118194 GGTAAAAATATGATAAAACC
1 GGTAAAAA-ATGATAAAACC
118214 GGTAACAAAATGATAAAACC
1 GGTAA-AAAATGATAAAACC
118234 GGTAAA
1 GGTAAA
118240 TTTAAAAGTG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
19 1 0.04
20 21 0.84
21 3 0.12
ACGTcount: A:0.54, C:0.11, G:0.17, T:0.17
Consensus pattern (19 bp):
GGTAAAAAATGATAAAACC
Found at i:118392 original size:19 final size:20
Alignment explanation
Indices: 118361--118406 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
118351 CGATATAACA
118361 GGTAAAAATATGAT-AAACC
1 GGTAAAAATATGATAAAACC
118380 GGTAACAAA-ATGATAAAACC
1 GGTAA-AAATATGATAAAACC
118400 GGTAAAA
1 GGTAAAA
118407 TGATACCGGA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 12 0.48
20 13 0.52
ACGTcount: A:0.54, C:0.11, G:0.17, T:0.17
Consensus pattern (20 bp):
GGTAAAAATATGATAAAACC
Found at i:120680 original size:21 final size:21
Alignment explanation
Indices: 120633--120697 Score: 69
Period size: 21 Copynumber: 3.1 Consensus size: 21
120623 AAGACAATCA
* *
120633 AGAGTCGAAGAGAAACTTGATC
1 AGAGTCGAAGAGAAACTCGA-G
*
120655 A-AGTCGTAGAGAAACTCGAG
1 AGAGTCGAAGAGAAACTCGAG
* *
120675 AGAGTCGAAGATACACTCGAG
1 AGAGTCGAAGAGAAACTCGAG
120696 AG
1 AG
120698 GCATAAGGGG
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
20 1 0.03
21 34 0.94
22 1 0.03
ACGTcount: A:0.40, C:0.15, G:0.29, T:0.15
Consensus pattern (21 bp):
AGAGTCGAAGAGAAACTCGAG
Found at i:120772 original size:33 final size:33
Alignment explanation
Indices: 120730--120795 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
120720 AAATAGATGG
*
120730 AGTGGTGAAAGAAGTAGAGGTGTTGAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
* *
120763 AGTGGTGAAAGAAGTTGGGGTGTTAAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
120796 TATTAAGATG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.29, C:0.00, G:0.48, T:0.23
Consensus pattern (33 bp):
AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
Found at i:122601 original size:19 final size:19
Alignment explanation
Indices: 122577--122625 Score: 80
Period size: 19 Copynumber: 2.6 Consensus size: 19
122567 AATGTCGAGT
122577 TAATTTTGTATAAGATTTA
1 TAATTTTGTATAAGATTTA
*
122596 TAATTTTGTATACGATTTA
1 TAATTTTGTATAAGATTTA
*
122615 TATTTTTGTAT
1 TAATTTTGTAT
122626 GTGAATATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.31, C:0.02, G:0.10, T:0.57
Consensus pattern (19 bp):
TAATTTTGTATAAGATTTA
Found at i:123139 original size:200 final size:199
Alignment explanation
Indices: 122744--123443 Score: 1165
Period size: 199 Copynumber: 3.6 Consensus size: 199
122734 CAATATGGCC
* *
122744 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAAGTGTCAATCCCAAAAACATCGAAA
1 AACAGGGTGCACCCATAAAGTGTCGATCCATATAT-AAAAAGTGTCGATCCCAAAATCATCGAAA
122809 ACCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAG
65 ACCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAG
122874 AGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCAGAATGAA
130 AGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCAGAATGAA
122939 TGGAA
195 TGGAA
122944 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAAAA
1 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAAAA
123009 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGA
66 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGA
123074 GAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAA
131 GAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATA-TTTTTTTCCAGAATGAA
123139 TGGAA
195 TGGAA
*
123144 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCG-AAC
1 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAAAA
123208 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGA
66 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGA
123273 GAATATGTCTAAATAATGTGTCG----------A--------C-AT-TTTTTTTCCAGAATGAAT
131 GAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCAGAATGAAT
**
123318 TAAA
196 GGAA
* *
123322 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCG-AAC
1 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAAAA
123386 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTT
66 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTT
123444 ACTTATAAAA
Statistics
Matches: 493, Mismatches: 6, Indels: 24
0.94 0.01 0.05
Matches are distributed among these distances:
178 141 0.29
180 2 0.00
181 1 0.00
189 1 0.00
199 230 0.47
200 118 0.24
ACGTcount: A:0.38, C:0.16, G:0.16, T:0.30
Consensus pattern (199 bp):
AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAAAA
CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGA
GAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCAGAATGAAT
GGAA
Found at i:123311 original size:178 final size:178
Alignment explanation
Indices: 123111--123443 Score: 630
Period size: 178 Copynumber: 1.9 Consensus size: 178
123101 TAATATAGTT
* * *
123111 TGTGTCGATATTTTTTTTCCAGAATGAATGGAAAACAGGGTGCACCCATAAAGTGTCGATCCATA
1 TGTGTCGACATTTTTTTTCCAGAATGAATGAAAAACAAGGTGCACCCATAAAGTGTCGATCCATA
123176 TATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATGTAATATGTAATTTTTCAAT
66 TATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATGTAATATGTAATTTTTCAAT
123241 CTAACCGGTACAATTATACCGGTTTTATGAGAGAATATGTCTAAATAA
131 CTAACCGGTACAATTATACCGGTTTTATGAGAGAATATGTCTAAATAA
*
123289 TGTGTCGACATTTTTTTTCCAGAATGAATTAAAAACAAGGTGCACCCATAAAGTGTCGATCCATA
1 TGTGTCGACATTTTTTTTCCAGAATGAATGAAAAACAAGGTGCACCCATAAAGTGTCGATCCATA
123354 TATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATGTAATATGTAATTTTTCAAT
66 TATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATGTAATATGTAATTTTTCAAT
123419 CTAACCGGTACAATTATACCGGTTT
131 CTAACCGGTACAATTATACCGGTTT
123444 ACTTATAAAA
Statistics
Matches: 151, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
178 151 1.00
ACGTcount: A:0.37, C:0.17, G:0.15, T:0.31
Consensus pattern (178 bp):
TGTGTCGACATTTTTTTTCCAGAATGAATGAAAAACAAGGTGCACCCATAAAGTGTCGATCCATA
TATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATGTAATATGTAATTTTTCAAT
CTAACCGGTACAATTATACCGGTTTTATGAGAGAATATGTCTAAATAA
Found at i:124685 original size:45 final size:45
Alignment explanation
Indices: 124610--124696 Score: 122
Period size: 45 Copynumber: 1.9 Consensus size: 45
124600 TTATTAATCA
*
124610 TTTAATTTTACCAAATCCAATAATCAAAAGGAACTAATCATTTGAT
1 TTTAATTTTA-CAAATCCAATAATCAAAAGGAACTAAGCATTTGAT
* *
124656 TTTAATTTT-CATAATCCAATGATCGAAAGGAACTAAGCATT
1 TTTAATTTTACA-AATCCAATAATCAAAAGGAACTAAGCATT
124697 GTACATATTC
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
44 2 0.05
45 26 0.70
46 9 0.24
ACGTcount: A:0.41, C:0.15, G:0.09, T:0.34
Consensus pattern (45 bp):
TTTAATTTTACAAATCCAATAATCAAAAGGAACTAAGCATTTGAT
Found at i:125783 original size:20 final size:20
Alignment explanation
Indices: 125758--125800 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
125748 TCTAAGAGCT
*
125758 CATTTAGGACCATTTAGATG
1 CATTTAGGACCATATAGATG
* *
125778 CATTTAGGAGCATATAGTTG
1 CATTTAGGACCATATAGATG
125798 CAT
1 CAT
125801 GTGGTGGATT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.35
Consensus pattern (20 bp):
CATTTAGGACCATATAGATG
Found at i:134264 original size:194 final size:193
Alignment explanation
Indices: 133977--134450 Score: 472
Period size: 194 Copynumber: 2.5 Consensus size: 193
133967 TTATATATGG
* * * * *
133977 TGACATTATGCATAATCTTCATTCATAATATTATTAGGCAACGATATATTATGTCATTAAAAATG
1 TGACGTTATGCATAAACGTCATTCATAATATTATTAGACAACGATATATTATGTCATTAAAAATA
* * * *
134042 TGACAATATCTCTTTCGTTACCTATAGGTTGATTTTAATGC-ATTATTCGTGATAATATAAATTA
66 TGACAATATCTCTTTCGTCACATATAGGTTGATTTTAAT-CTATTATTCGTGACAATATAAATCA
* * * *
134106 TCAATAACAAAATCTTATATAATTTAATGACGTAACTAAATGTCATATAATATAAATTATAAAA
130 TCAATAACAAAATCTTACATAATTTAATGACATAACTAAATGCCATAGAATATAAATTATAAAA
*
134170 TGACGTTATGCATAAACGTCATTCATAATATTATTAGATAAC-ATTTATATTATGTCACTT-AAA
1 TGACGTTATGCATAAACGTCATTCATAATATTATTAGACAACGA--TATATTATGTCA-TTAAAA
* * * * *
134233 ATAAT-ACAATTTCTCTTTTGTCACATATAGGTTGATTTTAATCTATTATTTGTGACAGTATATA
63 AT-ATGACAATATCTCTTTCGTCACATATAGGTTGATTTTAATCTATTATTCGTGACAATATAAA
* * * * ** * * *
134297 TCATCAATAACGAAATTTTACATAATTTAGTGACATAATTAGTTGCCATCGAATATCAATTATGA
127 TCATCAATAACAAAATCTTACATAATTTAATGACATAACTAAATGCCATAGAATATAAATTATAA
*
134362 AG
192 AA
* ** * * *** * * * * *
134364 TGATGTTATATATAAACGTCATTCATACTACTATTAGGTGACGATATACTACGTCACTAACAATG
1 TGACGTTATGCATAAACGTCATTCATAATATTATTAGACAACGATATATTATGTCATTAAAAATA
*
134429 TGACAAT-TTTCTTTTCGTCACA
66 TGACAATATCTC-TTTCGTCACA
134451 CATACAATAA
Statistics
Matches: 229, Mismatches: 43, Indels: 18
0.79 0.15 0.06
Matches are distributed among these distances:
192 6 0.03
193 66 0.29
194 153 0.67
195 4 0.02
ACGTcount: A:0.37, C:0.13, G:0.11, T:0.39
Consensus pattern (193 bp):
TGACGTTATGCATAAACGTCATTCATAATATTATTAGACAACGATATATTATGTCATTAAAAATA
TGACAATATCTCTTTCGTCACATATAGGTTGATTTTAATCTATTATTCGTGACAATATAAATCAT
CAATAACAAAATCTTACATAATTTAATGACATAACTAAATGCCATAGAATATAAATTATAAAA
Found at i:136871 original size:16 final size:16
Alignment explanation
Indices: 136836--136868 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
136826 ACTTGTTATC
*
136836 TTAAAAAAATATTTCA
1 TTAAAAAAATATTTAA
136852 TTAAAAAAATA-TTAA
1 TTAAAAAAATATTTAA
136867 TT
1 TT
136869 TAATAATTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 5 0.31
16 11 0.69
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (16 bp):
TTAAAAAAATATTTAA
Found at i:142518 original size:10 final size:11
Alignment explanation
Indices: 142500--142531 Score: 50
Period size: 10 Copynumber: 3.1 Consensus size: 11
142490 GTAGTTTACC
142500 TTATATTTTTA
1 TTATATTTTTA
142511 TT-TATTTTT-
1 TTATATTTTTA
142520 TTATATTTTTA
1 TTATATTTTTA
142531 T
1 T
142532 GTAATTACGT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
9 2 0.11
10 14 0.74
11 3 0.16
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (11 bp):
TTATATTTTTA
Found at i:148607 original size:15 final size:14
Alignment explanation
Indices: 148582--148624 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 14
148572 TCTTAACCAT
148582 TAAAGTTTTTAATTAG
1 TAAA-TTTTTAATT-G
*
148598 TAAATTTTTAATTT
1 TAAATTTTTAATTG
*
148612 TTAATTTTTAATT
1 TAAATTTTTAATT
148625 TTTTTTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 12 0.48
15 9 0.36
16 4 0.16
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.60
Consensus pattern (14 bp):
TAAATTTTTAATTG
Found at i:148619 original size:6 final size:7
Alignment explanation
Indices: 148600--148627 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
148590 TTAATTAGTA
148600 AATTTTT
1 AATTTTT
148607 AATTTTT
1 AATTTTT
148614 AATTTTT
1 AATTTTT
148621 AATTTTT
1 AATTTTT
148628 TTTCAACGGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (7 bp):
AATTTTT
Found at i:148843 original size:45 final size:45
Alignment explanation
Indices: 148768--148854 Score: 113
Period size: 45 Copynumber: 1.9 Consensus size: 45
148758 TTATTAATCA
* *
148768 TTTAATTTTACCAAATCCAATAATTAAAAGGAACTAATCATTTGAT
1 TTTAATTTTA-CAAATCCAATAATCAAAAGGAACTAAGCATTTGAT
* *
148814 TTTAATTTT-CATAATCCAATGATCGAAAGGAACTAAGCATT
1 TTTAATTTTACA-AATCCAATAATCAAAAGGAACTAAGCATT
148855 GTACATATTC
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
44 2 0.06
45 25 0.69
46 9 0.25
ACGTcount: A:0.41, C:0.14, G:0.09, T:0.36
Consensus pattern (45 bp):
TTTAATTTTACAAATCCAATAATCAAAAGGAACTAAGCATTTGAT
Found at i:149940 original size:20 final size:20
Alignment explanation
Indices: 149915--149957 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
149905 TCTAAGAGCT
*
149915 CATTTAGGACCATTTAGATG
1 CATTTAGGACCATATAGATG
* *
149935 CATTTAGGAGCATATAGTTG
1 CATTTAGGACCATATAGATG
149955 CAT
1 CAT
149958 GTGGTGGATT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.35
Consensus pattern (20 bp):
CATTTAGGACCATATAGATG
Found at i:158445 original size:194 final size:193
Alignment explanation
Indices: 158152--158625 Score: 458
Period size: 194 Copynumber: 2.5 Consensus size: 193
158142 TTATATATGG
* * *
158152 TGACATTATGCATAATA-TTCATTTATAATATTATTAGACAACGATATATTATGTCATTAAAAAT
1 TGACGTTATGCATAA-ACGTCATTCATAATATTATTAGACAACGATATATTATGTCATTAAAAAT
* * * * *
158216 GTGACAATATCTCTTTCGTTACCTATAGGTTGATTTTAATGC-ATTATTCGTGATAATATAAATT
65 ATGACAATATCTCTTTCGTCACATATAGGTTGATTTTAAT-CTATTATTCGTGACAATATAAATC
* *
158280 ATCAATAACAAAATCTTATATAATTTAATGACGTAACTAAATGTCAT-ATAATATAAATTATAAA
129 ATCAATAACAAAATCTTACATAATTTAATGACATAACTAAATGTCATCA-AATATAAATTATAAA
158344 A
193 A
*
158345 TGACGTTATGCATAAACGTCATTCATAATATTATTAGATAAC-ATTTATATTATGTCACTT-AAA
1 TGACGTTATGCATAAACGTCATTCATAATATTATTAGACAACGA--TATATTATGTCA-TTAAAA
* * * * * *
158408 ATAAT-ATAATTTCTCTTTTGTCACATATAGGTTGATTTTAATCTATTATTTGTGACAGTATATA
63 AT-ATGACAATATCTCTTTCGTCACATATAGGTTGATTTTAATCTATTATTCGTGACAATATAAA
** * * * ** * *
158472 TCATCAATAATGAAATTTTACATAATTTAGTGACATAATTAGTTGTCATCAAATATCAATTATGA
127 TCATCAATAACAAAATCTTACATAATTTAATGACATAACTAAATGTCATCAAATATAAATTATAA
*
158537 AG
192 AA
* ** * * *** * * * * *
158539 TGATGTTATATATAAACGTCATTCATACTACTATTAGGTGACGATATACTACGTCACTAACAATG
1 TGACGTTATGCATAAACGTCATTCATAATATTATTAGACAACGATATATTATGTCATTAAAAATA
*
158604 TGACAAT-TTTCTTTTCGTCACA
66 TGACAATATCTC-TTTCGTCACA
158626 CATACAATAA
Statistics
Matches: 228, Mismatches: 42, Indels: 22
0.78 0.14 0.08
Matches are distributed among these distances:
192 7 0.03
193 64 0.28
194 152 0.67
195 5 0.02
ACGTcount: A:0.38, C:0.12, G:0.10, T:0.40
Consensus pattern (193 bp):
TGACGTTATGCATAAACGTCATTCATAATATTATTAGACAACGATATATTATGTCATTAAAAATA
TGACAATATCTCTTTCGTCACATATAGGTTGATTTTAATCTATTATTCGTGACAATATAAATCAT
CAATAACAAAATCTTACATAATTTAATGACATAACTAAATGTCATCAAATATAAATTATAAAA
Found at i:161030 original size:16 final size:16
Alignment explanation
Indices: 160995--161027 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
160985 ACTTGTTATC
*
160995 TTAAAAAAATATTTCA
1 TTAAAAAAATATTTAA
161011 TTAAAAAAATA-TTAA
1 TTAAAAAAATATTTAA
161026 TT
1 TT
161028 TAATAATTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 5 0.31
16 11 0.69
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (16 bp):
TTAAAAAAATATTTAA
Found at i:162199 original size:12 final size:12
Alignment explanation
Indices: 162184--162211 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
162174 AAAAAAAAAG
162184 AAAAAATAAATA
1 AAAAAATAAATA
162196 AAAAAATAAATA
1 AAAAAATAAATA
162208 AAAA
1 AAAA
162212 GGACCAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (12 bp):
AAAAAATAAATA
Found at i:168337 original size:12 final size:12
Alignment explanation
Indices: 168320--168346 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
168310 GGATGAAGTA
168320 TTAAAACTTTTG
1 TTAAAACTTTTG
168332 TTAAAACTTTTG
1 TTAAAACTTTTG
168344 TTA
1 TTA
168347 GGAGTTAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.33, C:0.07, G:0.07, T:0.52
Consensus pattern (12 bp):
TTAAAACTTTTG
Found at i:168526 original size:2 final size:2
Alignment explanation
Indices: 168519--168546 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
168509 TTTAAACATA
168519 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
168547 TAAATACTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:170667 original size:14 final size:15
Alignment explanation
Indices: 170648--170677 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
170638 AATTAAAATA
170648 AAATTGT-AAAATTT
1 AAATTGTAAAAATTT
170662 AAATTGTAAAAATTT
1 AAATTGTAAAAATTT
170677 A
1 A
170678 TATTACTGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.47
15 8 0.53
ACGTcount: A:0.53, C:0.00, G:0.07, T:0.40
Consensus pattern (15 bp):
AAATTGTAAAAATTT
Found at i:172851 original size:43 final size:41
Alignment explanation
Indices: 172731--172869 Score: 136
Period size: 43 Copynumber: 3.2 Consensus size: 41
172721 CTAAAGTTCA
* ** *
172731 CGGCGTTTGTTAACGAAAAACGCCGCAATAGGTGACGATATATAG
1 CGGCGTTTGTT---GAAAAACACCGCAATAGGTGTTG-TATTTAG
172776 CGGCGTTTGTTGAAAAA-ACGCTGCAATAGGTGTTGCTATTTAG
1 CGGCGTTTGTTGAAAAACAC-C-GCAATAGGTGTTG-TATTTAG
* *
172819 CGGCGTTTGTCTTAAAAACACCGCAATAGGTGTTGTCGTTTAG
1 CGGCGTTTGT-TGAAAAACACCGCAATAGGTGTTGT-ATTTAG
172862 CGGCGTTT
1 CGGCGTTT
172870 TTCCCCCAAA
Statistics
Matches: 82, Mismatches: 7, Indels: 12
0.81 0.07 0.12
Matches are distributed among these distances:
41 1 0.01
42 8 0.10
43 53 0.65
44 7 0.09
45 13 0.16
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.29
Consensus pattern (41 bp):
CGGCGTTTGTTGAAAAACACCGCAATAGGTGTTGTATTTAG
Found at i:172886 original size:43 final size:43
Alignment explanation
Indices: 172746--172975 Score: 182
Period size: 43 Copynumber: 5.3 Consensus size: 43
172736 TTTGTTAACG
** * * **
172746 AAAAACGCCGCAATAGGTGACGAT-ATATAGCGGCGTTTGTT-GA
1 AAAAACGCCGCAATAGGTGTTG-TCGTTTAGCGGCGTTT-TTCCC
* * * **
172789 AAAAACGCTGCAATAGGTGTTG-CTATTTAGCGGCGTTTGTCTT
1 AAAAACGCCGCAATAGGTGTTGTC-GTTTAGCGGCGTTTTTCCC
*
172832 AAAAACACCGCAATAGGTGTTGTCGTTTAGCGGCGTTTTTCCC
1 AAAAACGCCGCAATAGGTGTTGTCGTTTAGCGGCGTTTTTCCC
** * * * *
172875 CCAAACGCCGCAGTAGGTATCGTTGTTTAGCGGCGTTTTTCCC
1 AAAAACGCCGCAATAGGTGTTGTCGTTTAGCGGCGTTTTTCCC
* * * *
172918 AAAAATGTCGCAATAGGTGTTGTTGTTTAGCGGTGTTTTT--C
1 AAAAACGCCGCAATAGGTGTTGTCGTTTAGCGGCGTTTTTCCC
172959 AAACAAGCGCCGCAATA
1 AAA-AA-CGCCGCAATA
172976 AGCGTTGAGA
Statistics
Matches: 151, Mismatches: 30, Indels: 12
0.78 0.16 0.06
Matches are distributed among these distances:
41 4 0.03
42 3 0.02
43 143 0.95
44 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (43 bp):
AAAAACGCCGCAATAGGTGTTGTCGTTTAGCGGCGTTTTTCCC
Found at i:172892 original size:86 final size:86
Alignment explanation
Indices: 172791--172958 Score: 210
Period size: 86 Copynumber: 2.0 Consensus size: 86
172781 TTTGTTGAAA
* * * **
172791 AAACGCTGCAATAGGTGTTGCTATTTAGCGGCGTTTGTCTTAAAAACACCGCAATAGGTGTTGTC
1 AAACGCCGCAATAGGTATCGCTATTTAGCGGCGTTTGTCCCAAAAACACCGCAATAGGTGTTGTC
172856 GTTTAGCGGCGTTTTTCCCCC
66 GTTTAGCGGCGTTTTTCCCCC
* * * * *** *
172877 AAACGCCGCAGTAGGTATCGTTGTTTAGCGGCGTTTTTCCCAAAAATGTCGCAATAGGTGTTGTT
1 AAACGCCGCAATAGGTATCGCTATTTAGCGGCGTTTGTCCCAAAAACACCGCAATAGGTGTTGTC
*
172942 GTTTAGCGGTGTTTTTC
66 GTTTAGCGGCGTTTTTC
172959 AAACAAGCGC
Statistics
Matches: 68, Mismatches: 14, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
86 68 1.00
ACGTcount: A:0.20, C:0.20, G:0.26, T:0.35
Consensus pattern (86 bp):
AAACGCCGCAATAGGTATCGCTATTTAGCGGCGTTTGTCCCAAAAACACCGCAATAGGTGTTGTC
GTTTAGCGGCGTTTTTCCCCC
Found at i:172995 original size:86 final size:86
Alignment explanation
Indices: 172773--173000 Score: 196
Period size: 86 Copynumber: 2.7 Consensus size: 86
172763 TGACGATATA
* * * * * * **
172773 TAGCGGCGTTTGTTGAAA-AAACGCTGCAATAGGTGTTGCTA-TTTAGCGGCGTTTGTCTTAAAA
1 TAGCGGCGTTT-TTCAAACAAACGCCGCAATAGGTATCG-TAGTTTAACGGCGTTTTTCCCAAAA
***
172836 ACACCGCAATAGGTGTTGTCGTT
64 ATGTCGCAATAGGTGTTGTCGTT
*** * * *
172859 TAGCGGCGTTTTTCCCCCAAACGCCGCAGTAGGTATCGTTGTTTAGCGGCGTTTTTCCCAAAAAT
1 TAGCGGCGTTTTTCAAACAAACGCCGCAATAGGTATCGTAGTTTAACGGCGTTTTTCCCAAAAAT
*
172924 GTCGCAATAGGTGTTGTTGTT
66 GTCGCAATAGGTGTTGTCGTT
* *
172945 TAGCGGTGTTTTTCAAACAAGCGCCGCAATAAGCGT-T-G-AGATTTAACGGCGTTTTT
1 TAGCGGCGTTTTTCAAACAAACGCCGCAAT-AG-GTATCGTAG-TTTAACGGCGTTTTT
173001 ATCGAAAACG
Statistics
Matches: 113, Mismatches: 24, Indels: 10
0.77 0.16 0.07
Matches are distributed among these distances:
85 4 0.04
86 104 0.92
87 3 0.03
88 2 0.02
ACGTcount: A:0.22, C:0.19, G:0.26, T:0.33
Consensus pattern (86 bp):
TAGCGGCGTTTTTCAAACAAACGCCGCAATAGGTATCGTAGTTTAACGGCGTTTTTCCCAAAAAT
GTCGCAATAGGTGTTGTCGTT
Found at i:174769 original size:22 final size:22
Alignment explanation
Indices: 174741--174787 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
174731 GCTTTACAAA
174741 AAGTAAACATTCAAGGATCAAG
1 AAGTAAACATTCAAGGATCAAG
174763 AAGTAAACATTCAAGGATCAAG
1 AAGTAAACATTCAAGGATCAAG
174785 AAG
1 AAG
174788 GCTTTACAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.51, C:0.13, G:0.19, T:0.17
Consensus pattern (22 bp):
AAGTAAACATTCAAGGATCAAG
Found at i:176833 original size:84 final size:81
Alignment explanation
Indices: 176678--176981 Score: 363
Period size: 84 Copynumber: 3.8 Consensus size: 81
176668 ACAATCAAAT
*
176678 TACGAGTCTATAGCGGCGTTTGGTATT-AAACGCCACAAAAGTACGTGTCTATAGCGGCGTTTGT
1 TACGAGTCTATAGCGGCGTTT-GTATTAAAACGCCACAAAAGTACAT-TCTATAGCGGCGTTTGT
176742 GTAAAAAAACGCCACTAAAG
64 GT--AAAAACGCCACTAAAG
176762 TACGAGTCTATAGCGGCGTTTGGTATTAAAACGCCACAAAAGTACATGTCTATAGCGGCGTTTGT
1 TACGAGTCTATAGCGGCGTTT-GTATTAAAACGCCACAAAAGTACAT-TCTATAGCGGCGTTTGT
* *
176827 GTAAAAATGTCACTAAAAG
64 GTAAAAACGCCACT-AAAG
* * *
176846 TAAGAGTCTATAGTGGCGTTTGTA-TAAAACGCCACAAAAGTACATTCTATA---GCG-TT-TAT
1 TACGAGTCTATAGCGGCGTTTGTATTAAAACGCCACAAAAGTACATTCTATAGCGGCGTTTGTGT
*
176905 AAAAACGCCACTAAAA
66 AAAAACGCCACTAAAG
* * * * * *
176921 TACTAGTTTATAGCGGCGTTTGTATAAAAACGCCACTACATTACGATTCT-TAGCGGCGTTT
1 TACGAGTCTATAGCGGCGTTTGTATTAAAACGCCACAAAAGTAC-ATTCTATAGCGGCGTTT
176982 TTATACAACG
Statistics
Matches: 195, Mismatches: 17, Indels: 20
0.84 0.07 0.09
Matches are distributed among these distances:
75 23 0.12
76 29 0.15
77 7 0.04
78 3 0.02
79 3 0.02
80 2 0.01
81 6 0.03
82 21 0.11
83 13 0.07
84 50 0.26
85 38 0.19
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (81 bp):
TACGAGTCTATAGCGGCGTTTGTATTAAAACGCCACAAAAGTACATTCTATAGCGGCGTTTGTGT
AAAAACGCCACTAAAG
Found at i:176952 original size:41 final size:41
Alignment explanation
Indices: 176678--177003 Score: 325
Period size: 42 Copynumber: 8.0 Consensus size: 41
176668 ACAATCAAAT
*
176678 TACGAGTCTATAGCGGCGTTTGGTAT-TAAACGCCACAAAAG
1 TACGAGTCTATAGCGGCGTTT-GTATAAAAACGCCACAAAAG
* * *
176719 TACGTGTCTATAGCGGCGTTTGTGTAAAAAAACGCCACTAAAG
1 TACGAGTCTATAGCGGCG-TT-TGTATAAAAACGCCACAAAAG
*
176762 TACGAGTCTATAGCGGCGTTTGGTATTAAAACGCCACAAAAG
1 TACGAGTCTATAGCGGCGTTT-GTATAAAAACGCCACAAAAG
* * *
176804 TAC-ATGTCTATAGCGGCGTTTGTGTAAAAATGTCACTAAAAG
1 TACGA-GTCTATAGCGGCGTTTGTATAAAAACGCCAC-AAAAG
* *
176846 TAAGAGTCTATAGTGGCGTTTGTAT-AAAACGCCACAAAAG
1 TACGAGTCTATAGCGGCGTTTGTATAAAAACGCCACAAAAG
*
176886 TAC-ATTCTATA---GCG-TT-TATAAAAACGCCACTAAAA-
1 TACGAGTCTATAGCGGCGTTTGTATAAAAACGCCAC-AAAAG
* * * * *
176921 TACTAGTTTATAGCGGCGTTTGTATAAAAACGCCACTACAT
1 TACGAGTCTATAGCGGCGTTTGTATAAAAACGCCACAAAAG
* * *
176962 TACGATTCT-TAGCGGCGTTTTTAT-ACAACGCCACAAATAG
1 TACGAGTCTATAGCGGCGTTTGTATAAAAACGCCACAAA-AG
177002 TA
1 TA
177004 TTTTGCGGCG
Statistics
Matches: 237, Mismatches: 31, Indels: 35
0.78 0.10 0.12
Matches are distributed among these distances:
34 3 0.01
35 15 0.06
36 13 0.05
39 20 0.08
40 28 0.12
41 58 0.24
42 68 0.29
43 32 0.14
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.28
Consensus pattern (41 bp):
TACGAGTCTATAGCGGCGTTTGTATAAAAACGCCACAAAAG
Done.