genome.fa.s5885.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005885.1 Hibiscus syriacus cultivar Beakdansim tig00013821_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70794

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3233--3257	12	2.1	12	100	0	50	56	0	36	8	1.29
25100--25139	20	2.0	20	85	9	55	20	17	15	47	1.83
28531--28555	2	12.5	2	100	0	50	0	48	0	52	1.00
37149--37517	20	18.5	20	84	4	449	34	26	18	19	1.95
38191--38237	24	2.0	24	87	8	69	25	14	21	38	1.92
38412--38436	12	2.1	12	100	0	50	72	0	28	0	0.86
40738--41330	19	33.4	19	79	16	684	46	18	20	13	1.83
40766--41352	161	3.7	161	94	2	983	46	18	21	14	1.83
40766--41352	52	11.0	52	88	6	867	46	18	21	14	1.83
41359--41460	19	5.6	19	85	12	151	14	23	17	44	1.86
41567--41603	14	2.6	14	91	0	65	45	21	0	32	1.52
41584--41654	37	1.9	37	97	0	133	52	16	1	29	1.53
43461--43595	19	7.6	19	76	16	137	45	24	19	10	1.81
43517--43573	14	3.7	14	77	20	60	45	24	21	8	1.80
43498--43590	33	2.8	33	98	0	177	47	22	20	9	1.79
43461--43595	52	2.5	54	75	18	131	45	24	19	10	1.81
43591--43719	19	7.3	19	75	17	125	8	17	28	45	1.77
43591--43682	33	2.8	33	93	3	150	7	18	28	45	1.76
43763--44142	93	4.1	93	98	0	744	46	18	12	22	1.83
43763--44142	185	2.0	186	98	0	744	46	18	12	22	1.83
45855--45952	19	5.7	18	73	22	86	42	22	24	10	1.84
45843--45930	14	5.7	14	72	25	63	42	23	25	9	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45835--45947	33	3.5	33	92	2	194	45	21	23	9	1.81
45964--46018	14	3.6	14	73	21	56	9	25	23	41	1.83
45948--46018	33	2.2	33	94	0	124	8	22	25	43	1.81
45959--46040	33	2.5	33	89	2	119	9	25	21	42	1.84
45971--46059	20	4.8	20	72	19	75	12	24	19	43	1.85
46139--46209	33	2.2	33	92	0	115	47	18	22	11	1.80
46584--46777	20	9.6	20	82	5	221	19	19	25	35	1.95
46584--46777	60	3.2	60	83	0	253	19	19	25	35	1.95
46833--46884	20	2.6	20	96	0	95	21	13	26	38	1.90
48743--48812	14	5.1	14	66	3	52	44	21	2	31	1.67
51028--51080	19	2.8	19	88	0	79	26	24	28	20	1.99
64602--64661	20	2.8	21	80	10	59	46	20	1	31	1.60
64624--64667	20	2.1	21	87	4	63	45	15	2	36	1.59
64804--64859	2	28.0	2	100	0	112	50	0	0	50	1.00
64931--64967	2	18.5	2	100	0	74	51	0	0	48	1.00
65850--65892	23	2.0	23	86	9	63	11	6	55	25	1.60
70247--70300	28	2.0	27	82	10	65	64	0	1	33	1.04

Tables:   1

The End!