genome.fa.s5886.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005886.1 Hibiscus syriacus cultivar Beakdansim tig00013823_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58834

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
898--1019	63	1.9	64	83	11	162	43	4	4	47	1.44
10408--10451	23	2.0	23	86	4	63	61	2	0	36	1.09
10457--10505	19	2.6	19	96	0	89	53	10	6	30	1.59
16164--16222	22	2.9	21	74	18	61	64	5	8	22	1.41
17514--17597	31	2.7	30	94	1	141	53	5	7	33	1.52
18672--19529	182	4.7	182	87	2	1148	40	14	17	27	1.88
21893--21936	21	2.1	21	95	0	79	38	11	36	13	1.81
21970--22069	33	3.0	33	97	0	182	29	0	46	25	1.53
22254--22287	2	17.5	2	87	6	52	50	2	0	47	1.16
28461--28490	15	2.0	15	93	0	51	36	6	23	33	1.81
29037--29146	36	3.1	36	71	10	98	30	14	12	42	1.83
29032--29197	72	2.3	73	84	1	199	28	14	13	43	1.83
29267--29348	36	2.3	35	79	6	92	28	19	13	39	1.89
29211--29618	101	4.0	101	91	3	667	31	18	12	37	1.88
29173--29625	203	2.2	204	93	2	777	30	18	12	37	1.88
29906--29947	2	21.5	2	95	4	77	50	0	0	50	1.00
31697--31735	18	2.2	18	90	0	60	53	0	43	2	1.14
32621--33304	199	3.4	199	83	5	832	40	14	15	30	1.87
33406--33450	23	2.0	23	86	0	63	37	17	6	37	1.76
33718--33759	22	1.9	22	85	0	57	38	4	7	50	1.51
38238--38300	32	2.0	32	96	0	117	34	15	15	33	1.90
39425--39449	13	1.9	13	100	0	50	40	12	24	24	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40006--40049	2	22.0	2	100	0	88	50	0	0	50	1.00
43292--43356	19	3.0	22	73	17	64	56	1	0	41	1.08
44050--44081	16	2.0	16	100	0	64	50	18	6	25	1.70
45099--45183	36	2.3	37	84	8	111	35	9	11	43	1.74
46604--46718	42	2.7	42	82	2	133	31	27	12	28	1.92
57792--57831	19	2.2	18	95	4	71	40	5	35	20	1.74

Tables:   1

The End!