Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01005887.1 Hibiscus syriacus cultivar Beakdansim tig00013825_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 63213
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.32
Found at i:1964 original size:117 final size:113
Alignment explanation
Indices: 1752--1988 Score: 325
Period size: 114 Copynumber: 2.1 Consensus size: 113
1742 TTTTTCTTCC
* * *
1752 ATTCTGGACATAAAGTACCGACACAATATTAAAAACGACTAGGTTGTAGACCTATTCGCTAATAA
1 ATTCTGGACATAAAGTACCGACACAAAATTAAAAACGAATAGGTTGTAGACCTATTCACTAATAA
*
1817 ACCGGTATACTTATACCGGTTATATTACAAAAGTATCTAGTATATTATA
66 ACCGGTATACTTATACCGGTTATATTAC-AAAGTATCTAGTACATTATA
* *
1866 ATTCTGGACATAAAGTACCGACACAAAATTAAAAGTGTCGATATAGG-TGTAGACCTATTCACTC
1 ATTCTGGACATAAAGTACCGACACAAAATTAAAA---ACGA-ATAGGTTGTAGACCTATTCACTA
* * *
1930 ATAAAACCGGTATATTTATA-CGGTTATATTACAAATTATCTATTACATTATA
62 AT-AAACCGGTATACTTATACCGGTTATATTACAAAGTATCTAGTACATTATA
1982 ATTCTGG
1 ATTCTGG
1989 GTTCCGATGT
Statistics
Matches: 109, Mismatches: 9, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
114 33 0.30
116 24 0.22
117 32 0.29
118 20 0.18
ACGTcount: A:0.38, C:0.16, G:0.14, T:0.32
Consensus pattern (113 bp):
ATTCTGGACATAAAGTACCGACACAAAATTAAAAACGAATAGGTTGTAGACCTATTCACTAATAA
ACCGGTATACTTATACCGGTTATATTACAAAGTATCTAGTACATTATA
Found at i:2165 original size:179 final size:181
Alignment explanation
Indices: 1866--2446 Score: 953
Period size: 179 Copynumber: 3.2 Consensus size: 181
1856 GTATATTATA
*
1866 ATTCTGGACATAAAGTACCGACACAAAATT-AAAAGTGTCGATATAGG-TGTAGACCTATTCACT
1 ATTCTGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCACT
*
1929 CATAAAACCGGTATATTTATACGGTTATATTAC-AAATTATCTATTACATTATAATTCTGGGTTC
66 CATAAAACCGATATATTTATAC-GTTATATTACAAAATTATCTATTACATTATAATTCTGGGTTC
* *
1993 CGATGTGTAAATGTTGATACTTTTTG-CAAGGTATCGACACATTTTTCTTCC
130 CGATGTGTAAATGTCGACACTTTTTGACAAGGTATCGACACATTTTTCTTCC
*
2044 ATTCTGGACATAAAGTACCGACACAATATTAAAAAGTGTC-ATATAGGTTGTAGACCTATTCGCT
1 ATTCTGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCACT
2108 CATAAAACCGATATATTTATAGCGTT-TATTACAAAATTATCTATTACATTATAATTCTGGGTTC
66 CATAAAACCGATATATTTATA-CGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTTC
2172 CGATGTGTAAATGTCGACACTTTTTGACAAGGTATCGACACATTTTTCTTCC
130 CGATGTGTAAATGTCGACACTTTTTGACAAGGTATCGACACATTTTTCTTCC
*
2224 ATTCTGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTATACCTATTCACT
1 ATTCTGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCACT
*
2289 CATAAAACCGATATATTTATACCGATTATATTACAAAATTATCTATTACATTATAATTATGGGTT
66 CATAAAACCGATATATTTATA-CG-TTATATTACAAAATTATCTATTACATTATAATTCTGGGTT
* * *
2354 CCGATGTTTTTTCAA--TCGACACTTTTTGAAAAGGTATCGACACATTTTTCTTCC
129 CCGATG---TGTAAATGTCGACACTTTTTGACAAGGTATCGACACATTTTTCTTCC
2408 ATTCTGGACATAAAGTACCGACACAATATTAAAAAGTGT
1 ATTCTGGACATAAAGTACCGACACAATATTAAAAAGTGT
2447 GAAAACTTTG
Statistics
Matches: 380, Mismatches: 12, Indels: 16
0.93 0.03 0.04
Matches are distributed among these distances:
178 42 0.11
179 102 0.27
180 66 0.17
181 45 0.12
182 2 0.01
183 42 0.11
184 77 0.20
186 4 0.01
ACGTcount: A:0.34, C:0.17, G:0.14, T:0.35
Consensus pattern (181 bp):
ATTCTGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCACT
CATAAAACCGATATATTTATACGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTTCC
GATGTGTAAATGTCGACACTTTTTGACAAGGTATCGACACATTTTTCTTCC
Found at i:3417 original size:3 final size:3
Alignment explanation
Indices: 3409--3462 Score: 72
Period size: 3 Copynumber: 18.0 Consensus size: 3
3399 ACTTGTTTAG
* * *
3409 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC GTC ATC TTC ATC GTC ATC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
*
3457 TTC ATC
1 ATC ATC
3463 GTCAGCTTCA
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.26, C:0.33, G:0.04, T:0.37
Consensus pattern (3 bp):
ATC
Found at i:3463 original size:12 final size:12
Alignment explanation
Indices: 3410--3479 Score: 86
Period size: 12 Copynumber: 5.8 Consensus size: 12
3400 CTTGTTTAGA
* *
3410 TCATCATCATCA
1 TCATCGTCATCT
* *
3422 TCATCATCATCA
1 TCATCGTCATCT
3434 TCATCGTCATCT
1 TCATCGTCATCT
3446 TCATCGTCATCT
1 TCATCGTCATCT
*
3458 TCATCGTCAGCT
1 TCATCGTCATCT
*
3470 TCATCTTCAT
1 TCATCGTCAT
3480 TGACCGCTTG
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 53 1.00
ACGTcount: A:0.23, C:0.33, G:0.06, T:0.39
Consensus pattern (12 bp):
TCATCGTCATCT
Found at i:5236 original size:19 final size:20
Alignment explanation
Indices: 5206--5243 Score: 69
Period size: 19 Copynumber: 1.9 Consensus size: 20
5196 GGTTTCGATG
5206 TTTATGGGATCGACACTTTT
1 TTTATGGGATCGACACTTTT
5226 TTTAT-GGATCGACACTTT
1 TTTATGGGATCGACACTTT
5244 ATTGTTGCAC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 13 0.72
20 5 0.28
ACGTcount: A:0.21, C:0.16, G:0.18, T:0.45
Consensus pattern (20 bp):
TTTATGGGATCGACACTTTT
Found at i:5549 original size:200 final size:200
Alignment explanation
Indices: 4904--5582 Score: 1184
Period size: 200 Copynumber: 3.4 Consensus size: 200
4894 AACATTAAAC
* * * *
4904 AGTGTCGATACA-TATTATATACCAATTCTCCCATAAAACCGGTATACTTATACCGGTTAGATTG
1 AGTGTCGATACATTATT-TAGACCTATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTG
* *
4968 AAAAATTACCTAATACATTATACTTTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATAT
65 AAAAATTACCTATTACATTATACTTATGGGTTTCGATGTTTATGGGATCGACACTTTTTATATAT
*
5033 GGATCGACACTTTATGGTTGCACCCTGTTTGCCATTCATTCTGGACCAAAAATATCGACACAAAC
130 GGATCGACACTTTATTGTTGCACCCTGTTTGCCATTCATTCTGGACCAAAAATATCGACACAAAC
5098 TACAAA
195 TACAAA
*
5104 AGTGTCGACACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGA
1 AGTGTCGATACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGA
*
5169 AAAATTACCTATTACATTATACTTATAGGTTTCGATGTTTATGGGATCGACACTTTTT-T-TATG
66 AAAATTACCTATTACATTATACTTATGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATG
*
5232 GATCGACACTTTATTGTTGCACCCTGTTTGCCATTCATTCTAGACCAAAAATATCGACACAAACT
131 GATCGACACTTTATTGTTGCACCCTGTTTGCCATTCATTCTGGACCAAAAATATCGACACAAACT
5297 ACAAA
196 ACAAA
*
5302 AGTATCGATACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGA
1 AGTGTCGATACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGA
*
5367 AAAATTACCTATTACATTATACTTATGGGTTTCGATGTTTATCGGATCGACACTTTTTATATATG
66 AAAATTACCTATTACATTATACTTATGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATG
* *
5432 GATCGACATTTTATTATTGCACCCTGTTTGCCATTCATTCTGGACCAAAAATATCGACACAAACT
131 GATCGACACTTTATTGTTGCACCCTGTTTGCCATTCATTCTGGACCAAAAATATCGACACAAACT
5497 ACAAA
196 ACAAA
**
5502 AGTGTCGATACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCAATTAGATTGA
1 AGTGTCGATACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGA
5567 AAAATTACCTATTACA
66 AAAATTACCTATTACA
5583 AAAGTGTCGA
Statistics
Matches: 456, Mismatches: 20, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
198 191 0.42
199 2 0.00
200 259 0.57
201 4 0.01
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.35
Consensus pattern (200 bp):
AGTGTCGATACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGA
AAAATTACCTATTACATTATACTTATGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATG
GATCGACACTTTATTGTTGCACCCTGTTTGCCATTCATTCTGGACCAAAAATATCGACACAAACT
ACAAA
Found at i:5694 original size:20 final size:19
Alignment explanation
Indices: 5648--5694 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
5638 TCTGATATCG
*
5648 TTTTACCGGTTTTATCATT
1 TTTTACCAGTTTTATCATT
*
5667 TTGATACCAGTTTTATCATAT
1 TT-TTACCAGTTTTATCAT-T
5688 TTTTACC
1 TTTTACC
5695 TATTATATCG
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
19 2 0.09
20 18 0.78
21 3 0.13
ACGTcount: A:0.21, C:0.17, G:0.09, T:0.53
Consensus pattern (19 bp):
TTTTACCAGTTTTATCATT
Found at i:5874 original size:20 final size:19
Alignment explanation
Indices: 5828--5874 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
5818 TCCGGTAACG
5828 TTTTACCAGTTTTATCATT
1 TTTTACCAGTTTTATCATT
* *
5847 TTGATACCGGTTTTATCATAT
1 TT-TTACCAGTTTTATCAT-T
5868 TTTTACC
1 TTTTACC
5875 TGGTATATCG
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
19 2 0.09
20 18 0.78
21 3 0.13
ACGTcount: A:0.21, C:0.17, G:0.09, T:0.53
Consensus pattern (19 bp):
TTTTACCAGTTTTATCATT
Found at i:6099 original size:180 final size:179
Alignment explanation
Indices: 5615--6084 Score: 690
Period size: 180 Copynumber: 2.6 Consensus size: 179
5605 CGTACTTACG
* * *
5615 AAAGTATCGACACTTTCAATATATCTGATATCGTTTTACCGGTTTTATCATTTTGATACCAGTTT
1 AAAGTATCGACACTTTCAATATATCTGGTAACGTTTTACCGGTTTTATCATTTTGATACCGGTTT
* * *
5680 TATCATATTTTTACCTATTATATCGTTGTGGATCGATATATTTTTTAAAGTATCGACACATTATA
66 TATCATATTTTTACCTGTTATATCGTTTTGGATCGATACATTTTTTAAAGTATCGACACATTATA
*
5745 GGCGCTAAAACTACTTCTCTTTTAAATTCACAAAGTGTCGATCCTTATAT
131 GGAGCTAAAACTA-TTCTCTTTTAAATTCACAAAGTGTCGATCCTTATAT
* *
5795 AAAGTATCGACACTTTCAATATATCCGGTAACGTTTTACCAGTTTTATCATTTTGATACCGGTTT
1 AAAGTATCGACACTTTCAATATATCTGGTAACGTTTTACCGGTTTTATCATTTTGATACCGGTTT
* *
5860 TATCATATTTTTACCTGGTATATCGTTTTGGATCGATACATTTTTTAAAAGTATCGACACTTTAT
66 TATCATATTTTTACCTGTTATATCGTTTTGGATCGATACATTTTTT-AAAGTATCGACACATTAT
** *
5925 AGGATTTAAAACT-TTCTCTTTTAAATTCACGAAGTGTCGATCCTTATATT
130 AGGAGCTAAAACTATTCTCTTTTAAATTCACAAAGTGTCGATCCTTATA-T
* * * * * **
5975 AAAGTACCGACACTTTAAATGTATCTGGTAGCGCTTTACCGGTTTTATCATTTAAATACCGGTTT
1 AAAGTATCGACACTTTCAATATATCTGGTAACGTTTTACCGGTTTTATCATTTTGATACCGGTTT
* * *
6040 TGTCATAGTTTTACCTGTTATATCGTTTTGGATCGACACATTTTT
66 TATCATATTTTTACCTGTTATATCGTTTTGGATCGATACATTTTT
6085 AATTTGGATC
Statistics
Matches: 261, Mismatches: 27, Indels: 4
0.89 0.09 0.01
Matches are distributed among these distances:
179 34 0.13
180 200 0.77
181 27 0.10
ACGTcount: A:0.28, C:0.17, G:0.13, T:0.42
Consensus pattern (179 bp):
AAAGTATCGACACTTTCAATATATCTGGTAACGTTTTACCGGTTTTATCATTTTGATACCGGTTT
TATCATATTTTTACCTGTTATATCGTTTTGGATCGATACATTTTTTAAAGTATCGACACATTATA
GGAGCTAAAACTATTCTCTTTTAAATTCACAAAGTGTCGATCCTTATAT
Found at i:6799 original size:29 final size:29
Alignment explanation
Indices: 6757--6812 Score: 103
Period size: 29 Copynumber: 1.9 Consensus size: 29
6747 TTCACCTAAT
6757 TAAATTGATGTAAGCAATGACATCAAAAC
1 TAAATTGATGTAAGCAATGACATCAAAAC
*
6786 TAAATTGATGTAAGCAATGTCATCAAA
1 TAAATTGATGTAAGCAATGACATCAAA
6813 TTAATTTAGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.46, C:0.12, G:0.14, T:0.27
Consensus pattern (29 bp):
TAAATTGATGTAAGCAATGACATCAAAAC
Found at i:8977 original size:21 final size:21
Alignment explanation
Indices: 8953--8993 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
8943 TCTGTTGATA
8953 ACAAAGGATGCAATCCTCATC
1 ACAAAGGATGCAATCCTCATC
* *
8974 ACAAAGGCTGCAGTCCTCAT
1 ACAAAGGATGCAATCCTCAT
8994 TGCTTCAGCC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.34, C:0.29, G:0.17, T:0.20
Consensus pattern (21 bp):
ACAAAGGATGCAATCCTCATC
Found at i:13816 original size:14 final size:14
Alignment explanation
Indices: 13797--13835 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
13787 TGTAGTTTGG
13797 TTGTTCTTTTCGTT
1 TTGTTCTTTTCGTT
*
13811 TTGTTCTTTTTGTT
1 TTGTTCTTTTCGTT
13825 TT-TATCTTTTC
1 TTGT-TCTTTTC
13836 TCAAGATTTG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
13 1 0.05
14 21 0.95
ACGTcount: A:0.03, C:0.13, G:0.10, T:0.74
Consensus pattern (14 bp):
TTGTTCTTTTCGTT
Found at i:14275 original size:242 final size:243
Alignment explanation
Indices: 13850--14339 Score: 910
Period size: 242 Copynumber: 2.0 Consensus size: 243
13840 GATTTGATTT
13850 GACGGTGTATCGACTGATCAATATGACAATTATTTATTATCTTGATGATAATCTGCTTTGGACCC
1 GACGGTGTATCGACTGATCAATATGACAATTATTTATTATCTTGATGATAATCTGCTTTGGACCC
* * *
13915 TTGAATTTGATTAATATAAGTGGTTGTGTTCGTGAATAGTTTCCCATGTTGCTCGAACTTGATAT
66 TCGAATTTGATTAAGATAAGTGGTTGTGTTCGTGAATAGTTTCCCATGTCGCTCGAACTTGATAT
13980 TCGGTTTGTCGATGGTCTTTCAATAGTTTACATCCCTTTTGTGGTCCAAAGTCGGATCTATTATT
131 TCGGTTTGTCGATGGTCTTTCAATAGTTTACATCCCTTTTGTGGTCCAAAGTCGGATCTATTATT
*
14045 ATATATATCTTTCGTAACC-GTTTTCGTCCGGGCACGAATGTTTCTTG
196 ATATATATCTTTCATAACCGGTTTTCGTCCGGGCACGAATGTTTCTTG
14092 GACGGTGTATCGACTGATCAATATGACAATTATTTATTATCTTGATGATAATCTGCTTTGGACCC
1 GACGGTGTATCGACTGATCAATATGACAATTATTTATTATCTTGATGATAATCTGCTTTGGACCC
*
14157 TCGAATTTGATTAAGATAAGTGGTTGTGTTCGTGAATAGTTTCTCATGTCGCTCGAACTTGATAT
66 TCGAATTTGATTAAGATAAGTGGTTGTGTTCGTGAATAGTTTCCCATGTCGCTCGAACTTGATAT
**
14222 TCGGTTTGTCGATGGTCTTTCAATAGTTTACATTTCTTTTGTGGTCCAAAGTCGGATCTATTATT
131 TCGGTTTGTCGATGGTCTTTCAATAGTTTACATCCCTTTTGTGGTCCAAAGTCGGATCTATTATT
14287 ATATATATCTTTCATAACCGGTTTTCGTCCGGGCACGAATGTTTCTTG
196 ATATATATCTTTCATAACCGGTTTTCGTCCGGGCACGAATGTTTCTTG
14335 GACGG
1 GACGG
14340 AAAATAAGTC
Statistics
Matches: 240, Mismatches: 7, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
242 207 0.86
243 33 0.14
ACGTcount: A:0.23, C:0.16, G:0.20, T:0.40
Consensus pattern (243 bp):
GACGGTGTATCGACTGATCAATATGACAATTATTTATTATCTTGATGATAATCTGCTTTGGACCC
TCGAATTTGATTAAGATAAGTGGTTGTGTTCGTGAATAGTTTCCCATGTCGCTCGAACTTGATAT
TCGGTTTGTCGATGGTCTTTCAATAGTTTACATCCCTTTTGTGGTCCAAAGTCGGATCTATTATT
ATATATATCTTTCATAACCGGTTTTCGTCCGGGCACGAATGTTTCTTG
Found at i:16533 original size:119 final size:121
Alignment explanation
Indices: 16355--16658 Score: 359
Period size: 125 Copynumber: 2.5 Consensus size: 121
16345 TATGAGATAT
* **
16355 AAGTTCTTCTCATTATGAACTT-TTCGCTCACT-TTGGAA-GAGTTCTTCTCATTATGAACTC-T
1 AAGTTCTTCTCATTATGAACTTCTTC-TTC-CTCTTCAAATGAGTTCTTCTCATTATGAACTCAT
* * *
16416 TCAACTGGGAA-TGA-TGATCCACCTCATTCTATGACAGAATCTAGCAAAAGGTTGAAC
64 TC-ACTGGAAATTGACTGATCCACCTCATTCTATGACAGAATCGAGCAAAAGGCTGAAC
*
16473 AAGTTCTTCTCATTATGAACTTCTTTTTCCTCTTCAAATGAGTTCTTCTCATTATGAACTCATTC
1 AAGTTCTTCTCATTATGAACTTCTTCTTCCTCTTCAAATGAGTTCTTCTCATTATGAACTCATTC
* * * * * * * *
16538 TCTGGAAATGTTGATGCTGATCTATCTCTTTTTGTGATAGAGTCGAGCAAAAGGCTGAAC
66 ACTGGAAA--TTGA--CTGATCCACCTCATTCTATGACAGAATCGAGCAAAAGGCTGAAC
*
16598 AAGTTCTTCTCATTATGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTCATTATGAACTC
1 AAGTTCTTCTCATTATGAACTTCTTCTTCCTCTTCAAATGAGTTCTTCTCATTATGAACTC
16659 CTTCTGGAAA
Statistics
Matches: 159, Mismatches: 17, Indels: 13
0.84 0.09 0.07
Matches are distributed among these distances:
117 2 0.01
118 28 0.18
119 30 0.19
120 3 0.02
122 3 0.02
125 93 0.58
ACGTcount: A:0.26, C:0.21, G:0.15, T:0.38
Consensus pattern (121 bp):
AAGTTCTTCTCATTATGAACTTCTTCTTCCTCTTCAAATGAGTTCTTCTCATTATGAACTCATTC
ACTGGAAATTGACTGATCCACCTCATTCTATGACAGAATCGAGCAAAAGGCTGAAC
Found at i:16790 original size:73 final size:73
Alignment explanation
Indices: 16669--17650 Score: 1450
Period size: 73 Copynumber: 13.5 Consensus size: 73
16659 CTTCTGGAAA
* *
16669 TGTTTTAAGAAAAACAATCTCAAGTGAGATAAATTGCTATTTCGAGTGAAACTTTATTAAGCGAG
1 TGTTTTAAGAAAAACAATCTCAAGTGAGATAAATTGCTATTTCGAGTGAAACTTTCTCAAGCGAG
16734 AAAAAGTT
66 AAAAAGTT
* * *
16742 TGTTTTAAGAAAAACAAACTCAAGTGAGATAAATTGCTATTTCAAGTGAAACTTTCTCAAACGAG
1 TGTTTTAAGAAAAACAATCTCAAGTGAGATAAATTGCTATTTCGAGTGAAACTTTCTCAAGCGAG
*
16807 AAAAAATT
66 AAAAAGTT
* * * *
16815 TGTTTTAAGAAAAAAAAATATCAAGTGAGATAAATTACTATTTCGAGTGAACCTTTCTCAAGCGA
1 TGTTTTAAG-AAAAACAATCTCAAGTGAGATAAATTGCTATTTCGAGTGAAACTTTCTCAAGCGA
16880 GAAAAAGTT
65 GAAAAAGTT
* *
16889 TGTTTTAAGAAAAACAATCTCAAGTGAGATAACTTGCTATTTCGAGTGAAACTTTCTCAAGTGAG
1 TGTTTTAAGAAAAACAATCTCAAGTGAGATAAATTGCTATTTCGAGTGAAACTTTCTCAAGCGAG
***
16954 AAAAAAAA
66 AAAAAGTT
* * * * *
16962 TATTTTAAGAAAATCAGTCTCAAGTCAGATAAATTGCTATTTCGAGTGAAAGTTTCTCAAGCGAG
1 TGTTTTAAGAAAAACAATCTCAAGTGAGATAAATTGCTATTTCGAGTGAAACTTTCTCAAGCGAG
17027 AAAAAGTT
66 AAAAAGTT
17035 TGTTTTAAGAAAAACAATCTCAAGTGAGATAAATTGCTATTTCGAGTGAAAACTTTCTCAAGCGA
1 TGTTTTAAGAAAAACAATCTCAAGTGAGATAAATTGCTATTTCGAGTG-AAACTTTCTCAAGCGA
17100 GAAAAAGTT
65 GAAAAAGTT
* * * ** *
17109 TG-TTTAAAAAAAACAATCTCAAGTGTGATAAATTGATATTTCGAGTGAAACTTTCTTTAGCGAA
1 TGTTTTAAGAAAAACAATCTCAAGTGAGATAAATTGCTATTTCGAGTGAAACTTTCTCAAGCGAG
17173 AAAAAGTT
66 AAAAAGTT
* *
17181 TGTTTTAAGAAAAACAATCTCAAGTGAGATAAATTGCTATTTCTAGTGAAACTTTCTCAAACGAG
1 TGTTTTAAGAAAAACAATCTCAAGTGAGATAAATTGCTATTTCGAGTGAAACTTTCTCAAGCGAG
*
17246 AAAAAGAT
66 AAAAAGTT
* *
17254 TGTTTTAAGAAAAACAATCTCAAGTGAGATAAATTGCTATTTTGAGTGAAACTTTCTTAAGCGAG
1 TGTTTTAAGAAAAACAATCTCAAGTGAGATAAATTGCTATTTCGAGTGAAACTTTCTCAAGCGAG
*
17319 AAAATGTT
66 AAAAAGTT
* * * * * *
17327 TTTTTTAAGAAAAATAATCTCAAGTGAGATAAATTGTTGTTTCG-GTGAACCTGTCTCAAGCGAG
1 TGTTTTAAGAAAAACAATCTCAAGTGAGATAAATTGCTATTTCGAGTGAAACTTTCTCAAGCGAG
**
17391 ATGAAGTT
66 AAAAAGTT
* **
17399 TGTTTTAAGAAAAACAATCTCAAGTGAGTTAAATTGCTATTTCGAGTGAAACTTTCTCAAAAGAG
1 TGTTTTAAGAAAAACAATCTCAAGTGAGATAAATTGCTATTTCGAGTGAAACTTTCTCAAGCGAG
17464 AAAAAGTT
66 AAAAAGTT
*
17472 TGTTTTAAGAAAAACAATCTCAAGTGAGATAAATTGCTATTTCGAGTGAAACTTTCTCAAGAGAG
1 TGTTTTAAGAAAAACAATCTCAAGTGAGATAAATTGCTATTTCGAGTGAAACTTTCTCAAGCGAG
17537 AAAAAGTT
66 AAAAAGTT
* * * *
17545 TGTTTTAAGAAAAACAATCTCAAGTGAGATAAATTGTTGTTTCGATTGAAA-TTATCTCAAACGA
1 TGTTTTAAGAAAAACAATCTCAAGTGAGATAAATTGCTATTTCGAGTGAAACTT-TCTCAAGCGA
**
17609 GATGAA-TCT
65 GAAAAAGT-T
17618 TGTTTTAAGAAAAACAATCTCAAGTGAGATAAA
1 TGTTTTAAGAAAAACAATCTCAAGTGAGATAAA
17651 GTTTTTGTTT
Statistics
Matches: 813, Mismatches: 90, Indels: 12
0.89 0.10 0.01
Matches are distributed among these distances:
72 88 0.11
73 634 0.78
74 91 0.11
ACGTcount: A:0.41, C:0.11, G:0.17, T:0.31
Consensus pattern (73 bp):
TGTTTTAAGAAAAACAATCTCAAGTGAGATAAATTGCTATTTCGAGTGAAACTTTCTCAAGCGAG
AAAAAGTT
Found at i:16876 original size:37 final size:37
Alignment explanation
Indices: 16835--17537 Score: 263
Period size: 36 Copynumber: 19.3 Consensus size: 37
16825 AAAAAAAATA
* *
16835 TCAAGTGAGATAAATTACTATTTCGAGTGAACCTTTC
1 TCAAGTGAGATAAATTGCTATTTCGAGTGAAACTTTC
* * * ** **
16872 TCAAGCGAGAAAAAGTTTG-T-TTT-AAGAAAAACAATC
1 TCAAGTGAGATAAA--TTGCTATTTCGAGTGAAACTTTC
*
16908 TCAAGTGAGATAACTTGCTATTTCGAGTGAAACTTTC
1 TCAAGTGAGATAAATTGCTATTTCGAGTGAAACTTTC
**** ** * **
16945 TCAAGTGAGA-AAAAAAATATTTTAAG-AAAATCAGTC
1 TCAAGTGAGATAAATTGCTATTTCGAGTGAAA-CTTTC
* *
16981 TCAAGTCAGATAAATTGCTATTTCGAGTGAAAGTTTC
1 TCAAGTGAGATAAATTGCTATTTCGAGTGAAACTTTC
* * * ** **
17018 TCAAGCGAGAAAAAGTTTG-T-TTT-AAGAAAAACAATC
1 TCAAGTGAGATAAA--TTGCTATTTCGAGTGAAACTTTC
17054 TCAAGTGAGATAAATTGCTATTTCGAGTGAAAACTTTC
1 TCAAGTGAGATAAATTGCTATTTCGAGTG-AAACTTTC
* * * * *** **
17092 TCAAGCGAGAAAAAGTT--TGTTT-AAAAAAAACAATC
1 TCAAGTGAGATAAA-TTGCTATTTCGAGTGAAACTTTC
* *
17127 TCAAGTGTGATAAATTGATATTTCGAGTGAAACTTTC
1 TCAAGTGAGATAAATTGCTATTTCGAGTGAAACTTTC
** * * * * ** **
17164 TTTAGCGAAAAAAAGTTTG-T-TTT-AAGAAAAACAATC
1 TCAAGTGAGATAAA--TTGCTATTTCGAGTGAAACTTTC
*
17200 TCAAGTGAGATAAATTGCTATTTCTAGTGAAACTTTC
1 TCAAGTGAGATAAATTGCTATTTCGAGTGAAACTTTC
** * * ** **
17237 TCAAACGAGAAAAAGATTG-T-TTT-AAGAAAAACAATC
1 TCAAGTGAG-ATAA-ATTGCTATTTCGAGTGAAACTTTC
*
17273 TCAAGTGAGATAAATTGCTATTTTGAGTGAAACTTTC
1 TCAAGTGAGATAAATTGCTATTTCGAGTGAAACTTTC
* * * * ** * * *
17310 TTAAGCGAGA-AAA-TGTTTTTTTTAAG-AAAAATAATC
1 TCAAGTGAGATAAATTG-CTATTTCGAGTGAAACT-TTC
* * * *
17346 TCAAGTGAGATAAATTGTTGTTTCG-GTGAACCTGTC
1 TCAAGTGAGATAAATTGCTATTTCGAGTGAAACTTTC
* * * ** **
17382 TCAAGCGAGATGAAGTTTG-T-TTT-AAGAAAAACAATC
1 TCAAGTGAGAT-AA-ATTGCTATTTCGAGTGAAACTTTC
*
17418 TCAAGTGAGTTAAATTGCTATTTCGAGTGAAACTTTC
1 TCAAGTGAGATAAATTGCTATTTCGAGTGAAACTTTC
** * * ** **
17455 TCAAAAGAGAAAAAGTTTG-T-TTT-AAGAAAAACAATC
1 TCAAGTGAGATAAA--TTGCTATTTCGAGTGAAACTTTC
17491 TCAAGTGAGATAAATTGCTATTTCGAGTGAAACTTTC
1 TCAAGTGAGATAAATTGCTATTTCGAGTGAAACTTTC
*
17528 TCAAGAGAGA
1 TCAAGTGAGA
17538 AAAAGTTTGT
Statistics
Matches: 461, Mismatches: 161, Indels: 88
0.65 0.23 0.12
Matches are distributed among these distances:
34 21 0.05
35 37 0.08
36 183 0.40
37 169 0.37
38 34 0.07
39 17 0.04
ACGTcount: A:0.40, C:0.12, G:0.17, T:0.31
Consensus pattern (37 bp):
TCAAGTGAGATAAATTGCTATTTCGAGTGAAACTTTC
Found at i:17602 original size:37 final size:37
Alignment explanation
Indices: 16835--17688 Score: 158
Period size: 36 Copynumber: 23.4 Consensus size: 37
16825 AAAAAAAATA
** * *
16835 TCAAGTGAGATAAATTACTATTTCGAGTGAACCTT-TC
1 TCAAGTGAGATAAATTGTTGTTTCGAGTGAA-ATTATC
* * * ** ** **
16872 TCAAGCGAGAAAAAGT-TTGTTTTAAGAAAAACAATC
1 TCAAGTGAGATAAATTGTTGTTTCGAGTGAAATTATC
* * *
16908 TCAAGTGAGATAACTTGCTATTTCGAGTGAAACTT-TC
1 TCAAGTGAGATAAATTGTTGTTTCGAGTGAAA-TTATC
* *** * * *
16945 TCAAGTGAGAAAAAAAATAT-TTT-AAG-AAAATCAGTC
1 TCAAGTGAGATAAATTGT-TGTTTCGAGTGAAATTA-TC
* * *
16981 TCAAGTCAGATAAATTGCTATTTCGAGTGAAAGTT-TC
1 TCAAGTGAGATAAATTGTTGTTTCGAGTGAAA-TTATC
* * * ** ** **
17018 TCAAGCGAGAAAAAGT-TTGTTTTAAGAAAAACAATC
1 TCAAGTGAGATAAATTGTTGTTTCGAGTGAAATTATC
* *
17054 TCAAGTGAGATAAATTGCTATTTCGAGTGAAAACTT-TC
1 TCAAGTGAGATAAATTGTTGTTTCGAGTG-AAA-TTATC
* * * * *** **
17092 TCAAGCGAGAAAAAGT-TTGTTT-AAAAAAAACAATC
1 TCAAGTGAGATAAATTGTTGTTTCGAGTGAAATTATC
* * *
17127 TCAAGTGTGATAAATTGATATTTCGAGTGAAACTT-TC
1 TCAAGTGAGATAAATTGTTGTTTCGAGTGAAA-TTATC
** * * * * ** ** **
17164 TTTAGCGAAAAAAAGT-TTGTTTTAAGAAAAACAATC
1 TCAAGTGAGATAAATTGTTGTTTCGAGTGAAATTATC
* * *
17200 TCAAGTGAGATAAATTGCTATTTCTAGTGAAACTT-TC
1 TCAAGTGAGATAAATTGTTGTTTCGAGTGAAA-TTATC
** * ** ** **
17237 TCAAACGAGA-AAA-AGATTGTTTTAAGAAAAACAATC
1 TCAAGTGAGATAAATTG-TTGTTTCGAGTGAAATTATC
* * *
17273 TCAAGTGAGATAAATTGCTATTTTGAGTGAAACTT-TC
1 TCAAGTGAGATAAATTGTTGTTTCGAGTGAAA-TTATC
* * * ** ** *
17310 TTAAGCGAGA-AAA-TGTTTTTTTTAAGAAAAATAATC
1 TCAAGTGAGATAAATTG-TTGTTTCGAGTGAAATTATC
** *
17346 TCAAGTGAGATAAATTGTTGTTTCG-GTGAACCTGTC
1 TCAAGTGAGATAAATTGTTGTTTCGAGTGAAATTATC
* * * ** ** **
17382 TCAAGCGAGATGAAGT-TTGTTTTAAGAAAAACAATC
1 TCAAGTGAGATAAATTGTTGTTTCGAGTGAAATTATC
* * *
17418 TCAAGTGAGTTAAATTGCTATTTCGAGTGAAACTT-TC
1 TCAAGTGAGATAAATTGTTGTTTCGAGTGAAA-TTATC
** * * ** ** **
17455 TCAAAAGAGAAAAAGT-TTGTTTTAAGAAAAACAATC
1 TCAAGTGAGATAAATTGTTGTTTCGAGTGAAATTATC
* *
17491 TCAAGTGAGATAAATTGCTATTTCGAGTGAAACTT-TC
1 TCAAGTGAGATAAATTGTTGTTTCGAGTGAAA-TTATC
* * * ** ** **
17528 TCAAGAGAGAAAAAGT-TTGTTTTAAGAAAAACAATC
1 TCAAGTGAGATAAATTGTTGTTTCGAGTGAAATTATC
*
17564 TCAAGTGAGATAAATTGTTGTTTCGATTGAAATTATC
1 TCAAGTGAGATAAATTGTTGTTTCGAGTGAAATTATC
** * * ** ** **
17601 TCAAACGAGATGAA-TCTTGTTTTAAGAAAAACAATC
1 TCAAGTGAGATAAATTGTTGTTTCGAGTGAAATTATC
* * * * *
17637 TCAAGTGAGATAAAGTTTTTGTTTCAAATGAAACTATA
1 TCAAGTGAGATAAA-TTGTTGTTTCGAGTGAAATTATC
*
17675 TCAAGCGAGATAAA
1 TCAAGTGAGATAAA
17689 ATCTTTGCTT
Statistics
Matches: 530, Mismatches: 247, Indels: 79
0.62 0.29 0.09
Matches are distributed among these distances:
34 1 0.00
35 31 0.06
36 244 0.46
37 200 0.38
38 53 0.10
39 1 0.00
ACGTcount: A:0.40, C:0.11, G:0.17, T:0.32
Consensus pattern (37 bp):
TCAAGTGAGATAAATTGTTGTTTCGAGTGAAATTATC
Found at i:20063 original size:71 final size:72
Alignment explanation
Indices: 19937--20077 Score: 230
Period size: 71 Copynumber: 2.0 Consensus size: 72
19927 ATATAATAGT
* *
19937 ATAAAAGACTAGCTGAATATTATCCATAAAGCCGGGGCTATTAACCAATTTCTTTAGGGG-GTAA
1 ATAAAAGACTAGCTGAATATTATCCATAAAGCCGGGGCTATTAACCAATTGCTTTAGGGGAATAA
20001 CTCAAGC
66 CTCAAGC
* * *
20008 ATAATAGACTAGTTGAATATTATCCATAAAGCTGGGGCTATTAACCAATTGCTTTAGGGGAATAA
1 ATAAAAGACTAGCTGAATATTATCCATAAAGCCGGGGCTATTAACCAATTGCTTTAGGGGAATAA
20073 CTCAA
66 CTCAA
20078 CATTTATTGT
Statistics
Matches: 64, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
71 56 0.88
72 8 0.12
ACGTcount: A:0.36, C:0.16, G:0.19, T:0.28
Consensus pattern (72 bp):
ATAAAAGACTAGCTGAATATTATCCATAAAGCCGGGGCTATTAACCAATTGCTTTAGGGGAATAA
CTCAAGC
Found at i:21405 original size:73 final size:73
Alignment explanation
Indices: 21278--22084 Score: 1167
Period size: 73 Copynumber: 11.1 Consensus size: 73
21268 CTTCATACTC
* *
21278 ATAAATTACTATTTCGAGTGAACCTTTCTCAAGCGAGAAAAAGTTTGTTTTAAGAAAAACAATCT
1 ATAAATTGCTATTTCGAGTGAAACTTTCTCAAGCGAGAAAAAGTTTGTTTTAAGAAAAACAATCT
21343 CAAGTGAG
66 CAAGTGAG
* * ** *
21351 ATAACTTGCTATTTCGAGTGAAACTTTCTCAAGTGAGAAAAAAATTATTTTAAGAAAAACAGA-C
1 ATAAATTGCTATTTCGAGTGAAACTTTCTCAAGCGAGAAAAAGTTTGTTTTAAGAAAAACA-ATC
21415 TCAAGTGAG
65 TCAAGTGAG
* * * *
21424 ATAAATTGCTATTTCAAGTGAAAGTTTCTCAAGCGGGAAAAAGATTGTTTTAAG-AAAACAATCT
1 ATAAATTGCTATTTCGAGTGAAACTTTCTCAAGCGAGAAAAAGTTTGTTTTAAGAAAAACAATCT
21488 CAAGTGAG
66 CAAGTGAG
21496 ATAAATTGCTATTTCGAGTGAAAACTTTCTCAAGCGAGAAAAAGTTTG-TTTAA-AAAAACAATC
1 ATAAATTGCTATTTCGAGTG-AAACTTTCTCAAGCGAGAAAAAGTTTGTTTTAAGAAAAACAATC
*
21559 TCAAGTGTG
65 TCAAGTGAG
* * *
21568 ATAAATTGATATTTCGAGTGAAACTTTCTTAAGCGAAAAAAAGTTTGTTTTAAGAAAAACAATCT
1 ATAAATTGCTATTTCGAGTGAAACTTTCTCAAGCGAGAAAAAGTTTGTTTTAAGAAAAACAATCT
21633 CAAGTGAG
66 CAAGTGAG
* * *
21641 ATAAATTGCTATTTCTAGTGAAACTTTCTCAAACGAGAAAAAGATTGTTTTAAGAAAAACAATCT
1 ATAAATTGCTATTTCGAGTGAAACTTTCTCAAGCGAGAAAAAGTTTGTTTTAAGAAAAACAATCT
*
21706 CAATTGAG
66 CAAGTGAG
* * *
21714 ATAAATTGCTATTTTGAGTGAAACTTTCTTAAGCGAGAAAAAGTTTGTTTTAAGAAAAAATAATC
1 ATAAATTGCTATTTCGAGTGAAACTTTCTCAAGCGAGAAAAAGTTTGTTTTAAG-AAAAACAATC
21779 TCAAGTGAG
65 TCAAGTGAG
* * * * **
21788 ATAAATTGTTGTTTCGAGTGAACCTGTCTCAAGCGAGATGAAGTTTGTTTTAAGAAAAACAATCT
1 ATAAATTGCTATTTCGAGTGAAACTTTCTCAAGCGAGAAAAAGTTTGTTTTAAGAAAAACAATCT
21853 CAAGTGAG
66 CAAGTGAG
*
21861 ATAAATTGCTATTTCGAGTGAAACTTTCTCAAACGAGAAAAAGTTTGTTTTAAGAAAAACAATCT
1 ATAAATTGCTATTTCGAGTGAAACTTTCTCAAGCGAGAAAAAGTTTGTTTTAAGAAAAACAATCT
21926 CAAGTGAG
66 CAAGTGAG
* * *
21934 ATAAATTGCTATTTCGAGTGAAATTTTCTCAAGAGAGAAAAAGTTTGTTTTAAGAAAAATAATCT
1 ATAAATTGCTATTTCGAGTGAAACTTTCTCAAGCGAGAAAAAGTTTGTTTTAAGAAAAACAATCT
21999 CAAGTGAG
66 CAAGTGAG
* * * ** *
22007 ATAAATTGTTGTTTCGATTGAAA-TTATCTCAAGCGAGATGAA-TCTTGTTTTAAGAAAAATAAT
1 ATAAATTGCTATTTCGAGTGAAACTT-TCTCAAGCGAGAAAAAGT-TTGTTTTAAGAAAAACAAT
* *
22070 ATTAAGTGAG
64 CTCAAGTGAG
22080 ATAAA
1 ATAAA
22085 GTTTTTGTTT
Statistics
Matches: 660, Mismatches: 65, Indels: 18
0.89 0.09 0.02
Matches are distributed among these distances:
71 26 0.04
72 84 0.13
73 486 0.74
74 64 0.10
ACGTcount: A:0.41, C:0.11, G:0.17, T:0.31
Consensus pattern (73 bp):
ATAAATTGCTATTTCGAGTGAAACTTTCTCAAGCGAGAAAAAGTTTGTTTTAAGAAAAACAATCT
CAAGTGAG
Found at i:22036 original size:37 final size:37
Alignment explanation
Indices: 21771--22122 Score: 178
Period size: 36 Copynumber: 9.6 Consensus size: 37
21761 TTTTAAGAAA
21771 AAATAATCTCAAGTGAGATAAATTGTTGTTTCGAGTG
1 AAATAATCTCAAGTGAGATAAATTGTTGTTTCGAGTG
* * * * * ** **
21808 AACCT-GTCTCAAGCGAGATGAAGT-TTGTTTTAAGAA
1 AA-ATAATCTCAAGTGAGATAAATTGTTGTTTCGAGTG
* * *
21844 AAACAATCTCAAGTGAGATAAATTGCTATTTCGAGTG
1 AAATAATCTCAAGTGAGATAAATTGTTGTTTCGAGTG
* ** * * ** **
21881 AAACT-TTCTCAAACGAGAAAAAGT-TTGTTTTAAGAA
1 AAA-TAATCTCAAGTGAGATAAATTGTTGTTTCGAGTG
* * *
21917 AAACAATCTCAAGTGAGATAAATTGCTATTTCGAGTG
1 AAATAATCTCAAGTGAGATAAATTGTTGTTTCGAGTG
** * * * ** **
21954 AAATTTTCTCAAGAGAGAAAAAGT-TTGTTTTAAGAA
1 AAATAATCTCAAGTGAGATAAATTGTTGTTTCGAGTG
*
21990 AAATAATCTCAAGTGAGATAAATTGTTGTTTCGATTG
1 AAATAATCTCAAGTGAGATAAATTGTTGTTTCGAGTG
* * * * ** **
22027 AAATTATCTCAAGCGAGATGAA-TCTTGTTTTAAGAA
1 AAATAATCTCAAGTGAGATAAATTGTTGTTTCGAGTG
* * * * *
22063 AAATAATATTAAGTGAGATAAAGTTTTTGTTTCAAATG
1 AAATAATCTCAAGTGAGATAAA-TTGTTGTTTCGAGTG
* *
22101 AAACT-ACCTCAAGCGAGATAAA
1 AAA-TAATCTCAAGTGAGATAAA
22123 ATCTTTGCTT
Statistics
Matches: 215, Mismatches: 90, Indels: 19
0.66 0.28 0.06
Matches are distributed among these distances:
36 98 0.46
37 90 0.42
38 26 0.12
39 1 0.00
ACGTcount: A:0.39, C:0.11, G:0.18, T:0.32
Consensus pattern (37 bp):
AAATAATCTCAAGTGAGATAAATTGTTGTTTCGAGTG
Found at i:22105 original size:220 final size:219
Alignment explanation
Indices: 21278--22084 Score: 1194
Period size: 220 Copynumber: 3.7 Consensus size: 219
21268 CTTCATACTC
* *
21278 ATAAATTACTATTTCGAGTGAACCTTTCTCAAGCGAGAAAAAGTTTGTTTTAAGAAAAACAATCT
1 ATAAATTGCTATTTCGAGTGAAACTTTCTCAAGCGAGAAAAAGTTTGTTTTAAGAAAAACAATCT
* * * ** *
21343 CAAGTGAGATAACTTGCTATTTCGAGTGAAACTTTCTCAAGTGAGAAAAAAATTATTTTAAGAAA
66 CAAGTGAGATAAATTGTTATTTCGAGTGAAACTTTCTCAAGCGAGAAAAAGTTTGTTTTAAGAAA
* * *
21408 AACAGA-CTCAAGTGAGATAAATTGCTATTTCAAGTGAAAGTTTCTCAAGCGGGAAAAAGATTGT
131 AACA-ATCTCAAGTGAGATAAATTGCTATTTCAAGTGAAACTTTCTCAAACGAGAAAAAGATTGT
21472 TTTAAG-AAAACAATCTCAAGTGAG
195 TTTAAGAAAAACAATCTCAAGTGAG
21496 ATAAATTGCTATTTCGAGTGAAAACTTTCTCAAGCGAGAAAAAGTTTG-TTTAA-AAAAACAATC
1 ATAAATTGCTATTTCGAGTG-AAACTTTCTCAAGCGAGAAAAAGTTTGTTTTAAGAAAAACAATC
* * * *
21559 TCAAGTGTGATAAATTGATATTTCGAGTGAAACTTTCTTAAGCGAAAAAAAGTTTGTTTTAAGAA
65 TCAAGTGAGATAAATTGTTATTTCGAGTGAAACTTTCTCAAGCGAGAAAAAGTTTGTTTTAAGAA
*
21624 AAACAATCTCAAGTGAGATAAATTGCTATTTCTAGTGAAACTTTCTCAAACGAGAAAAAGATTGT
130 AAACAATCTCAAGTGAGATAAATTGCTATTTCAAGTGAAACTTTCTCAAACGAGAAAAAGATTGT
*
21689 TTTAAGAAAAACAATCTCAATTGAG
195 TTTAAGAAAAACAATCTCAAGTGAG
* * *
21714 ATAAATTGCTATTTTGAGTGAAACTTTCTTAAGCGAGAAAAAGTTTGTTTTAAGAAAAAATAATC
1 ATAAATTGCTATTTCGAGTGAAACTTTCTCAAGCGAGAAAAAGTTTGTTTTAAG-AAAAACAATC
* * * **
21779 TCAAGTGAGATAAATTGTTGTTTCGAGTGAACCTGTCTCAAGCGAGATGAAGTTTGTTTTAAGAA
65 TCAAGTGAGATAAATTGTTATTTCGAGTGAAACTTTCTCAAGCGAGAAAAAGTTTGTTTTAAGAA
* *
21844 AAACAATCTCAAGTGAGATAAATTGCTATTTCGAGTGAAACTTTCTCAAACGAGAAAAAGTTTGT
130 AAACAATCTCAAGTGAGATAAATTGCTATTTCAAGTGAAACTTTCTCAAACGAGAAAAAGATTGT
21909 TTTAAGAAAAACAATCTCAAGTGAG
195 TTTAAGAAAAACAATCTCAAGTGAG
* * *
21934 ATAAATTGCTATTTCGAGTGAAATTTTCTCAAGAGAGAAAAAGTTTGTTTTAAGAAAAATAATCT
1 ATAAATTGCTATTTCGAGTGAAACTTTCTCAAGCGAGAAAAAGTTTGTTTTAAGAAAAACAATCT
* * **
21999 CAAGTGAGATAAATTGTTGTTTCGATTGAAA-TTATCTCAAGCGAGATGAA-TCTTGTTTTAAGA
66 CAAGTGAGATAAATTGTTATTTCGAGTGAAACTT-TCTCAAGCGAGAAAAAGT-TTGTTTTAAGA
* * *
22062 AAAATAATATTAAGTGAGATAAA
129 AAAACAATCTCAAGTGAGATAAA
22085 GTTTTTGTTT
Statistics
Matches: 540, Mismatches: 41, Indels: 15
0.91 0.07 0.03
Matches are distributed among these distances:
216 1 0.00
217 157 0.29
218 67 0.12
219 113 0.21
220 202 0.37
ACGTcount: A:0.41, C:0.11, G:0.17, T:0.31
Consensus pattern (219 bp):
ATAAATTGCTATTTCGAGTGAAACTTTCTCAAGCGAGAAAAAGTTTGTTTTAAGAAAAACAATCT
CAAGTGAGATAAATTGTTATTTCGAGTGAAACTTTCTCAAGCGAGAAAAAGTTTGTTTTAAGAAA
AACAATCTCAAGTGAGATAAATTGCTATTTCAAGTGAAACTTTCTCAAACGAGAAAAAGATTGTT
TTAAGAAAAACAATCTCAAGTGAG
Found at i:24486 original size:71 final size:72
Alignment explanation
Indices: 24365--24505 Score: 248
Period size: 71 Copynumber: 2.0 Consensus size: 72
24355 ATATAATAGT
*
24365 ATAAAAGACTAGCTGAATATTATCCATAAAGCCGGGGCTATTAACCAATTGCTTTAGGGG-GTAA
1 ATAAAAGACTAGCTGAATATTATCCATAAAGCCGGGGCTATTAACCAATTGCTTTAGGGGAATAA
24429 CTCAAGC
66 CTCAAGC
* *
24436 ATAATAGACTAGCTGAATATTATCCATAAAGCTGGGGCTATTAACCAATTGCTTTAGGGGAATAA
1 ATAAAAGACTAGCTGAATATTATCCATAAAGCCGGGGCTATTAACCAATTGCTTTAGGGGAATAA
24501 CTCAA
66 CTCAA
24506 CATTTATTGT
Statistics
Matches: 66, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
71 58 0.88
72 8 0.12
ACGTcount: A:0.36, C:0.17, G:0.20, T:0.27
Consensus pattern (72 bp):
ATAAAAGACTAGCTGAATATTATCCATAAAGCCGGGGCTATTAACCAATTGCTTTAGGGGAATAA
CTCAAGC
Found at i:27688 original size:19 final size:18
Alignment explanation
Indices: 27652--27696 Score: 72
Period size: 18 Copynumber: 2.4 Consensus size: 18
27642 AATAGTTTTT
27652 AAGAAAACACCATTTAAA
1 AAGAAAACACCATTTAAA
*
27670 AAGAAAACACCATTTTAA
1 AAGAAAACACCATTTAAA
27688 AAGATAAAC
1 AAGA-AAAC
27697 CAGTCTGCGT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
18 21 0.84
19 4 0.16
ACGTcount: A:0.60, C:0.16, G:0.07, T:0.18
Consensus pattern (18 bp):
AAGAAAACACCATTTAAA
Found at i:29869 original size:59 final size:60
Alignment explanation
Indices: 29775--29896 Score: 133
Period size: 59 Copynumber: 2.0 Consensus size: 60
29765 AATAGTTAAG
* * *
29775 TGATCATTTTGTAACTTTTAATAGTCAATGCACTCAA-CAAATCAACATCATATAGTCGAA
1 TGATCATTTTATAACTTCTAATAGTCAATGCACTCAATCAAA-CAACATCATATAATCGAA
* * * **
29835 TGATCA-TTTATAACTTCTGATGGTCAAATG-ACTCAATTAAACAACATTTTATAATCGAA
1 TGATCATTTTATAACTTCTAATAGTC-AATGCACTCAATCAAACAACATCATATAATCGAA
29894 TGA
1 TGA
29897 CAATTTGTAT
Statistics
Matches: 52, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
59 39 0.75
60 13 0.25
ACGTcount: A:0.39, C:0.16, G:0.11, T:0.34
Consensus pattern (60 bp):
TGATCATTTTATAACTTCTAATAGTCAATGCACTCAATCAAACAACATCATATAATCGAA
Found at i:30694 original size:2 final size:2
Alignment explanation
Indices: 30687--30717 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
30677 AAATCTTATC
*
30687 AT AT AT AT AC AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
30718 GGGATGACAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:30883 original size:13 final size:13
Alignment explanation
Indices: 30865--30904 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 13
30855 CGATTACCCA
30865 ATTACCCGCCCCG
1 ATTACCCGCCCCG
*
30878 ATTACCCACCCCG
1 ATTACCCGCCCCG
*
30891 A-TACCCGACCCG
1 ATTACCCGCCCCG
30903 AT
1 AT
30905 AAATATTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
12 10 0.43
13 13 0.57
ACGTcount: A:0.23, C:0.50, G:0.12, T:0.15
Consensus pattern (13 bp):
ATTACCCGCCCCG
Found at i:30961 original size:24 final size:26
Alignment explanation
Indices: 30934--30998 Score: 75
Period size: 24 Copynumber: 2.6 Consensus size: 26
30924 TTATATATAT
*
30934 ATAATATTAATA-A-ATTTAATTTAA
1 ATAATATAAATATATATTTAATTTAA
30958 ATAA-A-AAATATATATTTAATTTAA
1 ATAATATAAATATATATTTAATTTAA
*
30982 ATATATATATATATATA
1 ATA-ATATAAATATATA
30999 CCCGGCCCGA
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
22 4 0.12
23 2 0.06
24 18 0.53
25 1 0.03
26 1 0.03
27 8 0.24
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (26 bp):
ATAATATAAATATATATTTAATTTAA
Found at i:30976 original size:19 final size:19
Alignment explanation
Indices: 30952--30991 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
30942 AATAAATTTA
30952 ATTTAAATAAAAAATATAT
1 ATTTAAATAAAAAATATAT
* * *
30971 ATTTAATTTAAATATATAT
1 ATTTAAATAAAAAATATAT
30990 AT
1 AT
30992 ATATATACCC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (19 bp):
ATTTAAATAAAAAATATAT
Found at i:31040 original size:12 final size:12
Alignment explanation
Indices: 30996--31061 Score: 89
Period size: 12 Copynumber: 5.6 Consensus size: 12
30986 ATATATATAT
*
30996 ATACCCGGCCCG
1 ATACCCGGCCCA
*
31008 ATTCCCGGCCCA
1 ATACCCGGCCCA
*
31020 ATA-CCGACCCA
1 ATACCCGGCCCA
*
31031 ATACCCGACCCA
1 ATACCCGGCCCA
31043 ATACCCGGCCCA
1 ATACCCGGCCCA
31055 ATACCCG
1 ATACCCG
31062 TTTAAATAAC
Statistics
Matches: 48, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
11 10 0.21
12 38 0.79
ACGTcount: A:0.26, C:0.48, G:0.15, T:0.11
Consensus pattern (12 bp):
ATACCCGGCCCA
Found at i:31059 original size:24 final size:24
Alignment explanation
Indices: 30996--31061 Score: 89
Period size: 23 Copynumber: 2.8 Consensus size: 24
30986 ATATATATAT
* * *
30996 ATACCCGGCCCGATTCCCGGCCCA
1 ATACCCGGCCCAATACCCGACCCA
*
31020 ATA-CCGACCCAATACCCGACCCA
1 ATACCCGGCCCAATACCCGACCCA
31043 ATACCCGGCCCAATACCCG
1 ATACCCGGCCCAATACCCG
31062 TTTAAATAAC
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
23 19 0.53
24 17 0.47
ACGTcount: A:0.26, C:0.48, G:0.15, T:0.11
Consensus pattern (24 bp):
ATACCCGGCCCAATACCCGACCCA
Found at i:36652 original size:18 final size:20
Alignment explanation
Indices: 36613--36662 Score: 54
Period size: 18 Copynumber: 2.7 Consensus size: 20
36603 CTCTAAATTG
*
36613 TAATTTTATTTTA-TATATT
1 TAATATTATTTTATTATATT
*
36632 TAA-ATTATTTTATTTTA-T
1 TAATATTATTTTATTATATT
36650 TAATATT-TTTTAT
1 TAATATTATTTTAT
36663 ATTGAAATAT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
18 18 0.67
19 9 0.33
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (20 bp):
TAATATTATTTTATTATATT
Found at i:43178 original size:35 final size:35
Alignment explanation
Indices: 43132--43243 Score: 143
Period size: 35 Copynumber: 3.2 Consensus size: 35
43122 AAAACAACCC
* *
43132 TCAATTTCATTCTAAACCCCAATTTCCAAAGTAAT
1 TCAATTTCATTCTAAACCCCAAATTCCAAAATAAT
*
43167 TCAATTTCATTCTAAACCCTAAATTCCAAAATAAT
1 TCAATTTCATTCTAAACCCCAAATTCCAAAATAAT
* ** * * *
43202 TTAATTAAATTTTAAACCCCAAATTCTAAAATACT
1 TCAATTTCATTCTAAACCCCAAATTCCAAAATAAT
43237 TCAATTT
1 TCAATTT
43244 AAGGTTTAGA
Statistics
Matches: 65, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
35 65 1.00
ACGTcount: A:0.41, C:0.21, G:0.01, T:0.37
Consensus pattern (35 bp):
TCAATTTCATTCTAAACCCCAAATTCCAAAATAAT
Found at i:43307 original size:35 final size:35
Alignment explanation
Indices: 43239--43313 Score: 89
Period size: 35 Copynumber: 2.1 Consensus size: 35
43229 AAAATACTTC
* * *
43239 AATTTAAGGTTTAGAATATAATTGAATTATTTTGG
1 AATTTAAGGTTTAGAATAAAATTGAAGTATTTTGA
* *
43274 AATTTAGGGTTTAGAATAAAATT-AAGGTGTTTTGA
1 AATTTAAGGTTTAGAATAAAATTGAA-GTATTTTGA
43309 AATTT
1 AATTT
43314 TGAACATGAA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
34 2 0.06
35 32 0.94
ACGTcount: A:0.37, C:0.00, G:0.19, T:0.44
Consensus pattern (35 bp):
AATTTAAGGTTTAGAATAAAATTGAAGTATTTTGA
Found at i:54536 original size:49 final size:48
Alignment explanation
Indices: 54449--54586 Score: 231
Period size: 49 Copynumber: 2.9 Consensus size: 48
54439 AGAATACTTT
* *
54449 CCAACAGTTTTTCAAAGCAGCCAGGGACTTACCACTGCCTCCGACAAA
1 CCAACAGTTTTTCAAAGCAGCCAGGGACTTTCTACTGCCTCCGACAAA
* *
54497 CCAACAGTTTTTCAAAAACATCCAGGGACTTTCTACTGCCTCCGACAAA
1 CCAACAGTTTTTC-AAAGCAGCCAGGGACTTTCTACTGCCTCCGACAAA
54546 CCAACAGTTTTTCAAAGCAGCCAGGGACTTTCTACTGCCTC
1 CCAACAGTTTTTCAAAGCAGCCAGGGACTTTCTACTGCCTC
54587 GCATTTCCTT
Statistics
Matches: 83, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
48 39 0.47
49 44 0.53
ACGTcount: A:0.30, C:0.32, G:0.15, T:0.23
Consensus pattern (48 bp):
CCAACAGTTTTTCAAAGCAGCCAGGGACTTTCTACTGCCTCCGACAAA
Found at i:55167 original size:23 final size:20
Alignment explanation
Indices: 55140--55183 Score: 52
Period size: 20 Copynumber: 2.0 Consensus size: 20
55130 ATATATAAAT
55140 TCATCCGATATAAAATTTTATAA
1 TCATCC-AT-TAAAA-TTTATAA
*
55163 TCATCCATTAATATTTATAA
1 TCATCCATTAAAATTTATAA
55183 T
1 T
55184 GTAGAATACA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 8 0.40
21 4 0.20
22 2 0.10
23 6 0.30
ACGTcount: A:0.41, C:0.14, G:0.02, T:0.43
Consensus pattern (20 bp):
TCATCCATTAAAATTTATAA
Found at i:57470 original size:33 final size:34
Alignment explanation
Indices: 57428--57533 Score: 87
Period size: 33 Copynumber: 3.1 Consensus size: 34
57418 GTGGTAAGAA
* *
57428 ATTTATTTTTATGTTAGTAT-TTT-T-TAAATAGTT
1 ATTT-TTTTTATATTAATATATTTATGTAAATA-TT
57461 ATTATTTTTTATATTAATATATTTATGTAAATATT
1 ATT-TTTTTTATATTAATATATTTATGTAAATATT
* * *
57496 A-TTTTTTTAT-TAAAATAATATTTATATAATTATT
1 ATTTTTTTTATAT-TAAT-ATATTTATGTAAATATT
57530 ATTT
1 ATTT
57534 ATTTAGAATT
Statistics
Matches: 61, Mismatches: 5, Indels: 12
0.78 0.06 0.15
Matches are distributed among these distances:
32 1 0.02
33 27 0.44
34 21 0.34
35 6 0.10
36 6 0.10
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (34 bp):
ATTTTTTTTATATTAATATATTTATGTAAATATT
Found at i:57515 original size:36 final size:34
Alignment explanation
Indices: 57460--57538 Score: 101
Period size: 34 Copynumber: 2.4 Consensus size: 34
57450 TTTAAATAGT
*
57460 TATTATTTTTTATATT--AAT-ATATTTATGTAAA
1 TATTATTTTTT-TATTAAAATAATATTTATATAAA
*
57492 TATTATTTTTTTATTAAAATAATATTTATATAAT
1 TATTATTTTTTTATTAAAATAATATTTATATAAA
*
57526 TATTATTTATTTA
1 TATTATTTTTTTA
57539 GAATTATTAA
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
31 4 0.10
32 11 0.27
33 3 0.07
34 23 0.56
ACGTcount: A:0.38, C:0.00, G:0.01, T:0.61
Consensus pattern (34 bp):
TATTATTTTTTTATTAAAATAATATTTATATAAA
Found at i:59327 original size:21 final size:21
Alignment explanation
Indices: 59301--59394 Score: 129
Period size: 21 Copynumber: 4.5 Consensus size: 21
59291 TATGCCATCT
* *
59301 CCGCAGGGTTACATTCCGAGC
1 CCGCAGGGTTACATGCCTAGC
*
59322 CCGCAGGGTTACATTCCTAGC
1 CCGCAGGGTTACATGCCTAGC
59343 CCGCCA-GGTTACATGCCTAGC
1 CCG-CAGGGTTACATGCCTAGC
59364 CCGCCA-GGTTACATGCCTAGC
1 CCG-CAGGGTTACATGCCTAGC
59385 CCGCAGGGTT
1 CCGCAGGGTT
59395 TTATACCATA
Statistics
Matches: 69, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
20 2 0.03
21 65 0.94
22 2 0.03
ACGTcount: A:0.18, C:0.35, G:0.27, T:0.20
Consensus pattern (21 bp):
CCGCAGGGTTACATGCCTAGC
Found at i:59972 original size:33 final size:34
Alignment explanation
Indices: 59913--60016 Score: 129
Period size: 34 Copynumber: 3.1 Consensus size: 34
59903 AAATGTTTTT
*
59913 AAAATACAAATTATATTATTCAAAATTTAAAATA
1 AAAATAAAAATTATATTATTCAAAATTTAAAATA
* * *
59947 AAAATAAAAATAATATTATTC-AAATTTAAATTT
1 AAAATAAAAATTATATTATTCAAAATTTAAAATA
* * * *
59980 AAAATATAAATTATAGTATTCGAAATTTAACATA
1 AAAATAAAAATTATATTATTCAAAATTTAAAATA
60014 AAA
1 AAA
60017 TTTCAACTTA
Statistics
Matches: 59, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
33 28 0.47
34 31 0.53
ACGTcount: A:0.58, C:0.05, G:0.02, T:0.36
Consensus pattern (34 bp):
AAAATAAAAATTATATTATTCAAAATTTAAAATA
Found at i:60017 original size:33 final size:31
Alignment explanation
Indices: 59912--60017 Score: 113
Period size: 33 Copynumber: 3.2 Consensus size: 31
59902 TAAATGTTTT
*
59912 TAAAATACAAATTATATTATTCAAAATTTAAAA
1 TAAAATAAAAATTATATTATTC-AAATTT-AAA
*
59945 TAAAAATAAAAATAATATTATTCAAATTTAAA
1 T-AAAATAAAAATTATATTATTCAAATTTAAA
* *
59977 TTTAAAATATAAATTATAGTATTCGAAATTTAACA
1 --TAAAATAAAAATTATATTATTC-AAATTTAA-A
60012 TAAAAT
1 TAAAAT
60018 TTCAACTTAA
Statistics
Matches: 63, Mismatches: 5, Indels: 10
0.81 0.06 0.13
Matches are distributed among these distances:
32 3 0.05
33 31 0.49
34 28 0.44
35 1 0.02
ACGTcount: A:0.57, C:0.05, G:0.02, T:0.37
Consensus pattern (31 bp):
TAAAATAAAAATTATATTATTCAAATTTAAA
Found at i:60683 original size:128 final size:128
Alignment explanation
Indices: 60405--61029 Score: 1073
Period size: 128 Copynumber: 4.9 Consensus size: 128
60395 TTACCTGATT
*
60405 TACTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGAAATGATAACATATTCTC
1 TACTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTC
*
60470 TGACGAAATAATGGAAGGCGCG----TGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGG
66 TGACGAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGG
*
60529 TACTGATATATCTAGTGTCCCCGAGGGACATAAGTGACATAATAGGGCAATGATAACATATTCTC
1 TACTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTC
60594 TGACGAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGG
66 TGACGAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGG
*
60657 TACTGATATATCTAGTATCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTC
1 TACTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTC
*
60722 TGACGAAATAATGGAAGGCGCGCCCCCGGGAACGCACCTTCATGTGAATAGTGAAATAATAGG
66 TGACGAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGG
60785 TACTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTC
1 TACTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTC
* * * * *
60850 TGACAAAATAATGGAAGGCGCGCCCCCGGGAACGCGCTTTCATGTCACCT-GAGAAATAATAGG
66 TGACGAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGA-ATAGTGAAATAATAGG
*
60913 TAATGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTC
1 TACTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTC
* *
60978 TGACGAAATAATGGAAGGCGTGCCCCCGGGAACGCGTCTTCCAT-TGAATAGT
66 TGACGAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTT-CATGTGAATAGT
61030 ACTCCGATTA
Statistics
Matches: 473, Mismatches: 21, Indels: 10
0.94 0.04 0.02
Matches are distributed among these distances:
124 85 0.18
127 1 0.00
128 383 0.81
129 4 0.01
ACGTcount: A:0.33, C:0.19, G:0.25, T:0.23
Consensus pattern (128 bp):
TACTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTC
TGACGAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGG
Found at i:61113 original size:8 final size:8
Alignment explanation
Indices: 61100--61140 Score: 57
Period size: 8 Copynumber: 5.2 Consensus size: 8
61090 TCACAATCTT
61100 TCAAATTC
1 TCAAATTC
61108 TCAAATTC
1 TCAAATTC
* *
61116 CCAAACTC
1 TCAAATTC
61124 T-AAATTC
1 TCAAATTC
61131 TCAAATTC
1 TCAAATTC
61139 TC
1 TC
61141 TGAAAATGAG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
7 6 0.21
8 22 0.79
ACGTcount: A:0.37, C:0.29, G:0.00, T:0.34
Consensus pattern (8 bp):
TCAAATTC
Done.