Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01005888.1 Hibiscus syriacus cultivar Beakdansim tig00013826_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 80335
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.33
Found at i:1019 original size:21 final size:23
Alignment explanation
Indices: 993--1042 Score: 59
Period size: 23 Copynumber: 2.3 Consensus size: 23
983 AGGGAATCGA
993 TCCCCCCATG-A-GGGAACCAAT
1 TCCCCCCATGAAGGGGAACCAAT
** *
1014 TCCCCCTTTGAAGGGGAACCGAT
1 TCCCCCCATGAAGGGGAACCAAT
1037 TCCCCC
1 TCCCCC
1043 ACAGGGGAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 8 0.33
22 1 0.04
23 15 0.62
ACGTcount: A:0.22, C:0.40, G:0.20, T:0.18
Consensus pattern (23 bp):
TCCCCCCATGAAGGGGAACCAAT
Found at i:1050 original size:20 final size:20
Alignment explanation
Indices: 1025--1062 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
1015 CCCCCTTTGA
*
1025 AGGGGAACCGATTCCCCCAC
1 AGGGGAACCGATACCCCCAC
*
1045 AGGGGAATCGATACCCCC
1 AGGGGAACCGATACCCCC
1063 TGGGTTATTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.26, C:0.37, G:0.26, T:0.11
Consensus pattern (20 bp):
AGGGGAACCGATACCCCCAC
Found at i:7317 original size:20 final size:20
Alignment explanation
Indices: 7292--7380 Score: 119
Period size: 20 Copynumber: 4.5 Consensus size: 20
7282 CAACGCGGAA
7292 ATCGCAACGC-GAATATGACT
1 ATCGCAACGCAGAA-ATGACT
* *
7312 ATCGCAACACGGAAATGACT
1 ATCGCAACGCAGAAATGACT
*
7332 ATCGCAACGC-GTAATTGACT
1 ATCGCAACGCAG-AAATGACT
7352 ATCGCAACGCAGAAATGACT
1 ATCGCAACGCAGAAATGACT
7372 ATCGCAACG
1 ATCGCAACG
7381 AGAGAATCGC
Statistics
Matches: 62, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
19 1 0.02
20 57 0.92
21 4 0.06
ACGTcount: A:0.36, C:0.26, G:0.20, T:0.18
Consensus pattern (20 bp):
ATCGCAACGCAGAAATGACT
Found at i:7351 original size:40 final size:40
Alignment explanation
Indices: 7292--7380 Score: 144
Period size: 40 Copynumber: 2.2 Consensus size: 40
7282 CAACGCGGAA
*
7292 ATCGCAACGCGAATATGACTATCGCAACACGGAAATGACT
1 ATCGCAACGCGAATATGACTATCGCAACACAGAAATGACT
*
7332 ATCGCAACGCGTAAT-TGACTATCGCAACGCAGAAATGACT
1 ATCGCAACGCG-AATATGACTATCGCAACACAGAAATGACT
7372 ATCGCAACG
1 ATCGCAACG
7381 AGAGAATCGC
Statistics
Matches: 46, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
40 43 0.93
41 3 0.07
ACGTcount: A:0.36, C:0.26, G:0.20, T:0.18
Consensus pattern (40 bp):
ATCGCAACGCGAATATGACTATCGCAACACAGAAATGACT
Found at i:7391 original size:14 final size:14
Alignment explanation
Indices: 7372--7425 Score: 54
Period size: 14 Copynumber: 3.5 Consensus size: 14
7362 AGAAATGACT
7372 ATCGCAACGAGAGA
1 ATCGCAACGAGAGA
*
7386 ATCGCAATGCGAAATGAAA
1 ATCGCAA--CG--A-GAGA
7405 ATCGCAACGAGAGA
1 ATCGCAACGAGAGA
7419 ATCGCAA
1 ATCGCAA
7426 TGCTAAAATG
Statistics
Matches: 33, Mismatches: 2, Indels: 10
0.73 0.04 0.22
Matches are distributed among these distances:
14 17 0.52
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 10 0.30
ACGTcount: A:0.44, C:0.20, G:0.24, T:0.11
Consensus pattern (14 bp):
ATCGCAACGAGAGA
Found at i:7402 original size:33 final size:34
Alignment explanation
Indices: 7352--7447 Score: 142
Period size: 33 Copynumber: 2.9 Consensus size: 34
7342 GTAATTGACT
* **
7352 ATCGCAACGCAGAAATGACTATCGCAACGAGAGA
1 ATCGCAATGCAGAAATGAAAATCGCAACGAGAGA
7386 ATCGCAATGC-GAAATGAAAATCGCAACGAGAGA
1 ATCGCAATGCAGAAATGAAAATCGCAACGAGAGA
7419 ATCGCAATGCTA-AAATGAAAATCGCAACG
1 ATCGCAATGC-AGAAATGAAAATCGCAACG
7448 CATAAATATT
Statistics
Matches: 57, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
33 31 0.54
34 26 0.46
ACGTcount: A:0.44, C:0.21, G:0.22, T:0.14
Consensus pattern (34 bp):
ATCGCAATGCAGAAATGAAAATCGCAACGAGAGA
Found at i:7739 original size:20 final size:20
Alignment explanation
Indices: 7716--7784 Score: 111
Period size: 20 Copynumber: 3.5 Consensus size: 20
7706 GAAACTTAAA
7716 ATCGCAACGCGAAAATGACT
1 ATCGCAACGCGAAAATGACT
7736 ATCGCAACGCGAAAATGACT
1 ATCGCAACGCGAAAATGACT
* **
7756 ATCGCAATGCGAATTTGACT
1 ATCGCAACGCGAAAATGACT
7776 ATCGCAACG
1 ATCGCAACG
7785 AGAGAATCGT
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 45 1.00
ACGTcount: A:0.36, C:0.25, G:0.20, T:0.19
Consensus pattern (20 bp):
ATCGCAACGCGAAAATGACT
Found at i:7881 original size:20 final size:20
Alignment explanation
Indices: 7829--7892 Score: 101
Period size: 20 Copynumber: 3.2 Consensus size: 20
7819 GATTCTTTCG
**
7829 TTGCGATAGTCAAATTCGCA
1 TTGCGATAGTCATTTTCGCA
7849 TTGCGATAGTCATTTTCGCA
1 TTGCGATAGTCATTTTCGCA
*
7869 TTGCGATAGTCATTTTCGCG
1 TTGCGATAGTCATTTTCGCA
7889 TTGC
1 TTGC
7893 AATTTTGTTG
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.20, C:0.20, G:0.22, T:0.38
Consensus pattern (20 bp):
TTGCGATAGTCATTTTCGCA
Found at i:7898 original size:34 final size:34
Alignment explanation
Indices: 7860--7959 Score: 96
Period size: 33 Copynumber: 3.0 Consensus size: 34
7850 TGCGATAGTC
* *
7860 ATTTTCGCATTGCGATAGTCATTTTCGCGTTGCA
1 ATTTTCGCGTTGCGATAGTCATTTTCGCATTGCA
* ** **
7894 ATTTT-GTTGTTGCGATTTTCA-TTTCGCATTGTG
1 ATTTTCG-CGTTGCGATAGTCATTTTCGCATTGCA
* *
7927 ATTCTCTCGTTGCGATAGTCATTTTCGCATTGC
1 ATTTTCGCGTTGCGATAGTCATTTTCGCATTGC
7960 GATAGTAAAC
Statistics
Matches: 50, Mismatches: 13, Indels: 6
0.72 0.19 0.09
Matches are distributed among these distances:
33 25 0.50
34 25 0.50
ACGTcount: A:0.15, C:0.19, G:0.20, T:0.46
Consensus pattern (34 bp):
ATTTTCGCGTTGCGATAGTCATTTTCGCATTGCA
Found at i:9864 original size:20 final size:20
Alignment explanation
Indices: 9806--9875 Score: 86
Period size: 20 Copynumber: 3.5 Consensus size: 20
9796 GAAACTTTAA
* **
9806 ATCGCAACACGAAAATGAAA
1 ATCGCAACGCGAAAATGACT
*
9826 ATCGCAACACGAAAATGACT
1 ATCGCAACGCGAAAATGACT
**
9846 ATCGCAACGCGAATTTGACT
1 ATCGCAACGCGAAAATGACT
9866 ATCGCAACGC
1 ATCGCAACGC
9876 AAGAATCGCA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 45 1.00
ACGTcount: A:0.41, C:0.26, G:0.17, T:0.16
Consensus pattern (20 bp):
ATCGCAACGCGAAAATGACT
Found at i:9914 original size:33 final size:33
Alignment explanation
Indices: 9805--9918 Score: 95
Period size: 33 Copynumber: 3.2 Consensus size: 33
9795 TGAAACTTTA
* *
9805 AATCGCAACACGAAAATGAAAATCGCAACACGAAAATG
1 AATCGCAACGCG-AAATGAAAATCGC-A-ACG-ACA-G
* **
9843 ACTATCGCAACGCGAATTTGACTATCGCAACG-CAAG
1 A--ATCGCAACGCGAA-ATGAAAATCGCAACGAC-AG
9879 AATCGCAACGCGAAATGAAAATCGCAACGACAG
1 AATCGCAACGCGAAATGAAAATCGCAACGACAG
9912 AATCGCA
1 AATCGCA
9919 TTGCGATAGT
Statistics
Matches: 63, Mismatches: 8, Indels: 15
0.73 0.09 0.17
Matches are distributed among these distances:
33 21 0.33
34 14 0.22
36 2 0.03
37 1 0.02
38 4 0.06
39 3 0.05
40 18 0.29
ACGTcount: A:0.44, C:0.25, G:0.18, T:0.13
Consensus pattern (33 bp):
AATCGCAACGCGAAATGAAAATCGCAACGACAG
Found at i:10305 original size:22 final size:22
Alignment explanation
Indices: 10243--10307 Score: 103
Period size: 22 Copynumber: 3.0 Consensus size: 22
10233 TGACCGTGAA
* *
10243 TGATTTCGCCGGAGATGGAGAC
1 TGATTTCGTCGGAGATGGGGAC
*
10265 TGATATCGTCGGAGATGGGGAC
1 TGATTTCGTCGGAGATGGGGAC
10287 TGATTTCGTCGGAGATGGGGA
1 TGATTTCGTCGGAGATGGGGA
10308 TGGATGTCGT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 39 1.00
ACGTcount: A:0.22, C:0.14, G:0.40, T:0.25
Consensus pattern (22 bp):
TGATTTCGTCGGAGATGGGGAC
Found at i:10529 original size:20 final size:20
Alignment explanation
Indices: 10506--10599 Score: 161
Period size: 20 Copynumber: 4.7 Consensus size: 20
10496 CGATAGTCAG
*
10506 ATTCGCGTTGCGATTTACGT
1 ATTCGCATTGCGATTTACGT
10526 ATTCGCATTGCGATTTACGT
1 ATTCGCATTGCGATTTACGT
10546 ATTCGCATTGCGATTTACGT
1 ATTCGCATTGCGATTTACGT
*
10566 ATTCGCATTGCAATTTACGT
1 ATTCGCATTGCGATTTACGT
*
10586 ATTCGCAATGCGAT
1 ATTCGCATTGCGAT
10600 AGTCAGAATC
Statistics
Matches: 70, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 70 1.00
ACGTcount: A:0.21, C:0.20, G:0.20, T:0.38
Consensus pattern (20 bp):
ATTCGCATTGCGATTTACGT
Found at i:29358 original size:24 final size:24
Alignment explanation
Indices: 29331--29440 Score: 93
Period size: 24 Copynumber: 4.6 Consensus size: 24
29321 GTAAACGGAG
*
29331 ATATCAGAAATCAAAACAGAATTC
1 ATATCAGAAATCAGAACAGAATTC
* *
29355 ATATCAGATATCAGAACAGAATCC
1 ATATCAGAAATCAGAACAGAATTC
* *
29379 AGATCAG-AATCAGAACATAATTC
1 ATATCAGAAATCAGAACAGAATTC
* *
29402 AGGTAAC-G-TATCAGAACAGAATTC
1 A--TATCAGAAATCAGAACAGAATTC
*
29426 A-ATTCGGAAATCAGA
1 ATA-TCAGAAATCAGA
29441 TAAAAATATT
Statistics
Matches: 68, Mismatches: 13, Indels: 10
0.75 0.14 0.11
Matches are distributed among these distances:
21 1 0.01
22 1 0.01
23 15 0.22
24 49 0.72
25 2 0.03
ACGTcount: A:0.47, C:0.17, G:0.15, T:0.21
Consensus pattern (24 bp):
ATATCAGAAATCAGAACAGAATTC
Found at i:29374 original size:12 final size:11
Alignment explanation
Indices: 29339--29423 Score: 55
Period size: 12 Copynumber: 7.3 Consensus size: 11
29329 AGATATCAGA
*
29339 AATCAAAACAG
1 AATCAGAACAG
* *
29350 AATTCATATCAG
1 AA-TCAGAACAG
29362 ATATCAGAACAG
1 A-ATCAGAACAG
*
29374 AATCCAGATCAG
1 AAT-CAGAACAG
*
29386 AATCAGAACAT
1 AATCAGAACAG
29397 AATTCAGGTAAC-G
1 AA-TCA-G-AACAG
*
29410 TATCAGAACAG
1 AATCAGAACAG
29421 AAT
1 AAT
29424 TCAATTCGGA
Statistics
Matches: 57, Mismatches: 10, Indels: 14
0.70 0.12 0.17
Matches are distributed among these distances:
10 3 0.05
11 16 0.28
12 32 0.56
13 3 0.05
14 3 0.05
ACGTcount: A:0.48, C:0.18, G:0.14, T:0.20
Consensus pattern (11 bp):
AATCAGAACAG
Found at i:31877 original size:8 final size:8
Alignment explanation
Indices: 31834--31880 Score: 51
Period size: 10 Copynumber: 5.5 Consensus size: 8
31824 TCAAAGTTTT
31834 GGTCAACAG
1 GGTCAAC-G
31843 TGGTCAACG
1 -GGTCAACG
31852 TCGGTCAACG
1 --GGTCAACG
31862 GG-CAACG
1 GGTCAACG
31869 GGTCAACG
1 GGTCAACG
31877 GGTC
1 GGTC
31881 GGGTCGGGTA
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
7 7 0.21
8 11 0.32
9 1 0.03
10 15 0.44
ACGTcount: A:0.23, C:0.26, G:0.36, T:0.15
Consensus pattern (8 bp):
GGTCAACG
Found at i:37399 original size:52 final size:52
Alignment explanation
Indices: 37321--37486 Score: 279
Period size: 52 Copynumber: 3.3 Consensus size: 52
37311 TTATAAAATA
37321 ATTTATTTTAAAATAATTTATTTTAAAATAAATTATTATAAAATATGGATTG
1 ATTTATTTTAAAATAATTTATTTTAAAATAAATTATTATAAAATATGGATTG
37373 ATTTATTTTAAAATAATTTATTTTAAAATAAATTATTATAAAATATGGATTG
1 ATTTATTTTAAAATAATTTATTTTAAAATAAATTATTATAAAATATGGATTG
* *
37425 ATTTATTTTAAAATAATTTATTTT-AAAT-AA-T-TTAT-TAGTATGGATTG
1 ATTTATTTTAAAATAATTTATTTTAAAATAAATTATTATAAAATATGGATTG
37472 ATTTATTTTAAAATA
1 ATTTATTTTAAAATA
37487 TGAATTGATT
Statistics
Matches: 112, Mismatches: 2, Indels: 5
0.94 0.02 0.04
Matches are distributed among these distances:
47 25 0.22
48 4 0.04
49 1 0.01
50 2 0.02
51 4 0.04
52 76 0.68
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (52 bp):
ATTTATTTTAAAATAATTTATTTTAAAATAAATTATTATAAAATATGGATTG
Found at i:37430 original size:22 final size:22
Alignment explanation
Indices: 37405--37522 Score: 119
Period size: 22 Copynumber: 5.2 Consensus size: 22
37395 TTAAAATAAA
*
37405 TTATTATAAAATATGGATTGAT
1 TTATTTTAAAATATGGATTGAT
** * *
37427 TTATTTTAAAATAATTTATTTTAA
1 TTATTTTAAAAT-ATGGA-TTGAT
* * * *
37451 ATAATTTATTAGTATGGATTGAT
1 TTATTTTA-AAATATGGATTGAT
*
37474 TTATTTTAAAATATGAATTGAT
1 TTATTTTAAAATATGGATTGAT
37496 TTATTTTAAAATATGGATTGAT
1 TTATTTTAAAATATGGATTGAT
37518 TTATT
1 TTATT
37523 ATTGTAGTTG
Statistics
Matches: 74, Mismatches: 19, Indels: 6
0.75 0.19 0.06
Matches are distributed among these distances:
22 48 0.65
23 12 0.16
24 12 0.16
25 2 0.03
ACGTcount: A:0.38, C:0.00, G:0.10, T:0.52
Consensus pattern (22 bp):
TTATTTTAAAATATGGATTGAT
Found at i:37454 original size:14 final size:15
Alignment explanation
Indices: 37262--37460 Score: 211
Period size: 15 Copynumber: 12.4 Consensus size: 15
37252 AATAAGGTTG
37262 TTTATTTTAAAATAA
1 TTTATTTTAAAATAA
*
37277 TTTATTATAAAATAA
1 TTTATTTTAAAATAA
37292 TTTATTTTAAAATAA
1 TTTATTTTAAAATAA
*
37307 TTTATTATAAAATAA
1 TTTATTTTAAAATAA
37322 TTTATTTTAAAATAA
1 TTTATTTTAAAATAA
37337 TTTATTTTAAAATAA
1 TTTATTTTAAAATAA
* *
37352 ATTATTATAAAATATGGATTGA
1 TTTATT-TTAAA-AT--A---A
37374 TTTATTTTAAAATAA
1 TTTATTTTAAAATAA
37389 TTTATTTTAAAATAA
1 TTTATTTTAAAATAA
* *
37404 ATTATTATAAAATATGGATTGA
1 TTTATT-TTAAA-AT--A---A
37426 TTTATTTTAAAATAA
1 TTTATTTTAAAATAA
37441 TTTATTTT-AAATAA
1 TTTATTTTAAAATAA
37455 TTTATT
1 TTTATT
37461 AGTATGGATT
Statistics
Matches: 158, Mismatches: 12, Indels: 29
0.79 0.06 0.15
Matches are distributed among these distances:
14 12 0.08
15 106 0.67
16 8 0.05
17 4 0.03
18 2 0.01
19 2 0.01
20 4 0.03
21 8 0.05
22 12 0.08
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (15 bp):
TTTATTTTAAAATAA
Found at i:37577 original size:32 final size:32
Alignment explanation
Indices: 37536--37671 Score: 193
Period size: 32 Copynumber: 4.6 Consensus size: 32
37526 GTAGTTGTAC
37536 GGATTGATTTATTTTAAATAATTTATTAGTAT
1 GGATTGATTTATTTTAAATAATTTATTAGTAT
37568 GGATTGATTTATTTTAAATAATTTATTAGTAT
1 GGATTGATTTATTTTAAATAATTTATTAGTAT
37600 GGATTGATTTA-TTT---TAA---A--A-TAT
1 GGATTGATTTATTTTAAATAATTTATTAGTAT
*
37622 CGATTGATTTATTTTAAATAATTTATTAGTAT
1 GGATTGATTTATTTTAAATAATTTATTAGTAT
37654 GGATTGATTTATTTTAAA
1 GGATTGATTTATTTTAAA
37672 ATATAGATTG
Statistics
Matches: 92, Mismatches: 2, Indels: 20
0.81 0.02 0.18
Matches are distributed among these distances:
22 13 0.14
23 4 0.04
25 1 0.01
26 3 0.03
28 3 0.03
29 1 0.01
31 4 0.04
32 63 0.68
ACGTcount: A:0.35, C:0.01, G:0.12, T:0.52
Consensus pattern (32 bp):
GGATTGATTTATTTTAAATAATTTATTAGTAT
Found at i:37638 original size:54 final size:54
Alignment explanation
Indices: 37569--37703 Score: 261
Period size: 54 Copynumber: 2.5 Consensus size: 54
37559 TATTAGTATG
*
37569 GATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATC
1 GATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATA
37623 GATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATA
1 GATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATA
37677 GATTGATTTATTTTAAATAATTTATTA
1 GATTGATTTATTTTAAATAATTTATTA
37704 TTGTAGTTGT
Statistics
Matches: 80, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
54 80 1.00
ACGTcount: A:0.36, C:0.01, G:0.10, T:0.53
Consensus pattern (54 bp):
GATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATA
Found at i:37666 original size:18 final size:18
Alignment explanation
Indices: 37556--37612 Score: 59
Period size: 18 Copynumber: 3.4 Consensus size: 18
37546 ATTTTAAATA
37556 ATTTATTAGTATGGATTG
1 ATTTATTAGTATGGATTG
* * *
37574 ATTTATT--T-T-AAATA
1 ATTTATTAGTATGGATTG
37588 ATTTATTAGTATGGATTG
1 ATTTATTAGTATGGATTG
37606 ATTTATT
1 ATTTATT
37613 TTAAAATATC
Statistics
Matches: 29, Mismatches: 6, Indels: 8
0.67 0.14 0.19
Matches are distributed among these distances:
14 9 0.31
15 1 0.03
16 2 0.07
17 1 0.03
18 16 0.55
ACGTcount: A:0.32, C:0.00, G:0.14, T:0.54
Consensus pattern (18 bp):
ATTTATTAGTATGGATTG
Found at i:38644 original size:14 final size:15
Alignment explanation
Indices: 38625--38654 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
38615 TTAGATAACG
38625 TTTAATATT-TAAAT
1 TTTAATATTATAAAT
38639 TTTAATATTATAAAT
1 TTTAATATTATAAAT
38654 T
1 T
38655 AAATTGAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.60
15 6 0.40
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (15 bp):
TTTAATATTATAAAT
Found at i:39509 original size:19 final size:19
Alignment explanation
Indices: 39469--39516 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 19
39459 ATATTTTATC
*
39469 AAAATAATATTAAAATATT
1 AAAATAATATTAAAATAAT
*
39488 AAATTAATATT-AAATGAAT
1 AAAATAATATTAAAAT-AAT
39507 AAAATAATAT
1 AAAATAATAT
39517 CTTTTTGAGC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
18 4 0.16
19 21 0.84
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.35
Consensus pattern (19 bp):
AAAATAATATTAAAATAAT
Found at i:45363 original size:12 final size:10
Alignment explanation
Indices: 45322--45362 Score: 57
Period size: 10 Copynumber: 4.1 Consensus size: 10
45312 TTTATCACAC
45322 CAAATTCTCT
1 CAAATTCTCT
45332 CAAATTCTCT
1 CAAATTCTCT
45342 -AAATTTCTCT
1 CAAA-TTCTCT
*
45352 CAAATACTCT
1 CAAATTCTCT
45362 C
1 C
45363 TTTTTAAGGT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
9 3 0.11
10 22 0.79
11 3 0.11
ACGTcount: A:0.32, C:0.29, G:0.00, T:0.39
Consensus pattern (10 bp):
CAAATTCTCT
Found at i:45680 original size:111 final size:111
Alignment explanation
Indices: 45486--45707 Score: 399
Period size: 111 Copynumber: 2.0 Consensus size: 111
45476 TGAAAATCAT
* *
45486 ATATCTCTACACTTTGTTGATACGGTAACATTTTAACGTTTTAATTTAATTTAAATTATTAGTAA
1 ATATCTCGACACTTTGCTGATACGGTAACATTTTAACGTTTTAATTTAATTTAAATTATTAGTAA
* *
45551 TATTTAGTTGATTTATTTAATGCATGATTATTAGATTAAGAATTAA
66 TAATTAGTTGATTCATTTAATGCATGATTATTAGATTAAGAATTAA
*
45597 ATATCTCGACACTTTGCTGATACGGTAGCATTTTAACGTTTTAATTTAATTTAAATTATTAGTAA
1 ATATCTCGACACTTTGCTGATACGGTAACATTTTAACGTTTTAATTTAATTTAAATTATTAGTAA
45662 TAATTAGTTGATTCATTTAATGCATGATTATTAGATTAAGAATTAA
66 TAATTAGTTGATTCATTTAATGCATGATTATTAGATTAAGAATTAA
45708 TTTTTGTAAT
Statistics
Matches: 106, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
111 106 1.00
ACGTcount: A:0.35, C:0.08, G:0.12, T:0.45
Consensus pattern (111 bp):
ATATCTCGACACTTTGCTGATACGGTAACATTTTAACGTTTTAATTTAATTTAAATTATTAGTAA
TAATTAGTTGATTCATTTAATGCATGATTATTAGATTAAGAATTAA
Found at i:50759 original size:189 final size:190
Alignment explanation
Indices: 50403--50809 Score: 500
Period size: 189 Copynumber: 2.1 Consensus size: 190
50393 ATTTATAGTT
* * * *
50403 CTTTTGACTATTACAAATTAAAAGATAATTTTTAATTTGAATATTAGTATGATAATTACTCTTTT
1 CTTTTGACCATTACAAATTAAAAGATAATTTTTAATTTGAAAATTAGTATGATAATTAATCTTTG
* * * * * *
50468 AATAAGTCAATTTAAAAAGGTATTTGTTATCTTTTTAATTTTGAATATTAAAAGATAATTATATA
66 AATAAGCCAACTTAAAAAGGTATTTGTTACCCTTTTAACTTTGAATATTAAAAGAAAATTATATA
* * *
50533 TTTTGTATATTTCAAATTAAAATAATATTTGTTTAAGTTCGAATAATAAAAGAAGTTTAC
131 TTTTGTATATTTCAAATTAAAATAATATATATTTAAGTTCGAACAATAAAAGAAGTTTAC
* *
50593 CTTTTGACCATTGCAAATT-AAATAT-ATTATTTAATTTGAAAATTAGTA-GTATAATTAATCTT
1 CTTTTGACCATTACAAATTAAAAGATAATT-TTTAATTTGAAAATTAGTATG-ATAATTAATCTT
* * *
50655 TGAATATGCCAACTTAAAAATGTATTTGTTACCCTTTTAACTTTGGATATT-AAAGAAAATTATA
64 TGAATAAGCCAACTTAAAAAGGTATTTGTTACCCTTTTAACTTTGAATATTAAAAGAAAATTATA
* * * *
50719 TATTTT-TATACATTTCAAATTAAAATAATATATATTTAAGTTTGAACGATAAAAGGAGTTTTAT
129 TATTTTGTAT--ATTTCAAATTAAAATAATATATATTTAAGTTCGAACAATAAAAGAAG-TTTAC
* ** *
50783 ATTTTGAATATTTCAAATTAAAAGATA
1 CTTTTGACCATTACAAATTAAAAGATA
50810 TTGTTATATG
Statistics
Matches: 183, Mismatches: 27, Indels: 12
0.82 0.12 0.05
Matches are distributed among these distances:
187 3 0.02
188 22 0.12
189 117 0.64
190 36 0.20
191 5 0.03
ACGTcount: A:0.41, C:0.06, G:0.09, T:0.44
Consensus pattern (190 bp):
CTTTTGACCATTACAAATTAAAAGATAATTTTTAATTTGAAAATTAGTATGATAATTAATCTTTG
AATAAGCCAACTTAAAAAGGTATTTGTTACCCTTTTAACTTTGAATATTAAAAGAAAATTATATA
TTTTGTATATTTCAAATTAAAATAATATATATTTAAGTTCGAACAATAAAAGAAGTTTAC
Found at i:55988 original size:35 final size:33
Alignment explanation
Indices: 55949--56033 Score: 91
Period size: 35 Copynumber: 2.5 Consensus size: 33
55939 GTATTTCAGT
55949 TAATTTTGTT-TATTACCATTTAATATCAGTTATTG
1 TAATTTTGTTATATTACCATTTAATA-C--TTATTG
*
55984 TAATTTGGTTATCATTTACCATTTAATACTTATTG
1 TAATTTTGTTAT-A-TTACCATTTAATACTTATTG
* *
56019 TAAGTTTGTTGTATT
1 TAATTTTGTTATATT
56034 TAAAATTATT
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
33 2 0.05
34 1 0.02
35 24 0.56
36 1 0.02
37 2 0.05
38 13 0.30
ACGTcount: A:0.27, C:0.08, G:0.11, T:0.54
Consensus pattern (33 bp):
TAATTTTGTTATATTACCATTTAATACTTATTG
Found at i:59684 original size:40 final size:40
Alignment explanation
Indices: 59627--59715 Score: 160
Period size: 40 Copynumber: 2.2 Consensus size: 40
59617 TAATTGAATA
* *
59627 GCGCGGCCCTTGTCCCGCGCTATATCTTACGTGGCGTAAG
1 GCGCGGCCCATGCCCCGCGCTATATCTTACGTGGCGTAAG
59667 GCGCGGCCCATGCCCCGCGCTATATCTTACGTGGCGTAAG
1 GCGCGGCCCATGCCCCGCGCTATATCTTACGTGGCGTAAG
59707 GCGCGGCCC
1 GCGCGGCCC
59716 CTGTCCGCGC
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 47 1.00
ACGTcount: A:0.12, C:0.36, G:0.31, T:0.20
Consensus pattern (40 bp):
GCGCGGCCCATGCCCCGCGCTATATCTTACGTGGCGTAAG
Found at i:61191 original size:26 final size:26
Alignment explanation
Indices: 61162--61222 Score: 95
Period size: 26 Copynumber: 2.3 Consensus size: 26
61152 TACATCATCC
*
61162 ACCCGACCCAAAATTTTAAAGTATAA
1 ACCCAACCCAAAATTTTAAAGTATAA
*
61188 ACCCAACCCAAAATTTTAAATTATAA
1 ACCCAACCCAAAATTTTAAAGTATAA
*
61214 GCCCAACCC
1 ACCCAACCC
61223 GATCTGATAT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.44, C:0.30, G:0.05, T:0.21
Consensus pattern (26 bp):
ACCCAACCCAAAATTTTAAAGTATAA
Found at i:63424 original size:19 final size:19
Alignment explanation
Indices: 63397--63433 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
63387 GTATCGTGAG
*
63397 GTCCCCGAGAATATGAAGT
1 GTCCACGAGAATATGAAGT
*
63416 GTCCACGAGATTATGAAG
1 GTCCACGAGAATATGAAG
63434 CATATTATTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.32, C:0.19, G:0.27, T:0.22
Consensus pattern (19 bp):
GTCCACGAGAATATGAAGT
Found at i:67705 original size:14 final size:14
Alignment explanation
Indices: 67686--67743 Score: 62
Period size: 14 Copynumber: 4.1 Consensus size: 14
67676 TCTTTTAGTA
*
67686 TTTTTAATGTATGT
1 TTTTTAATATATGT
67700 TTTTTAATATATGT
1 TTTTTAATATATGT
** * *
67714 TTTTTGGTAAATTT
1 TTTTTAATATATGT
67728 TTTTATAATATATGT
1 TTTT-TAATATATGT
67743 T
1 T
67744 AGATATTCAA
Statistics
Matches: 34, Mismatches: 9, Indels: 1
0.77 0.20 0.02
Matches are distributed among these distances:
14 27 0.79
15 7 0.21
ACGTcount: A:0.26, C:0.00, G:0.10, T:0.64
Consensus pattern (14 bp):
TTTTTAATATATGT
Found at i:70391 original size:13 final size:13
Alignment explanation
Indices: 70373--70398 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
70363 TGGCTCTGCC
70373 ACTTATTTTATTT
1 ACTTATTTTATTT
70386 ACTTATTTTATTT
1 ACTTATTTTATTT
70399 TTCATAATTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.08, G:0.00, T:0.69
Consensus pattern (13 bp):
ACTTATTTTATTT
Found at i:71499 original size:29 final size:30
Alignment explanation
Indices: 71444--71505 Score: 90
Period size: 29 Copynumber: 2.1 Consensus size: 30
71434 GATTTTTATT
*
71444 AACGGAATGAAACGTTAGGCACCAAACTAG
1 AACGAAATGAAACGTTAGGCACCAAACTAG
* *
71474 AACGAAAT-AAACGTTAGGCACTAAACTGG
1 AACGAAATGAAACGTTAGGCACCAAACTAG
71503 AAC
1 AAC
71506 AAAAACATAC
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
29 22 0.76
30 7 0.24
ACGTcount: A:0.45, C:0.19, G:0.21, T:0.15
Consensus pattern (30 bp):
AACGAAATGAAACGTTAGGCACCAAACTAG
Found at i:72608 original size:237 final size:239
Alignment explanation
Indices: 71992--73306 Score: 1081
Period size: 227 Copynumber: 5.5 Consensus size: 239
71982 TTGTTGGGAG
* * * *
71992 AAAGGTATGAAACTAATTTTCTATTTGAAAACATTTAATACATTTACCTAAATTACGAGAAACAT
1 AAAGGTATGAAACTAATTTTCTATTTGAAAACGTTTAATATA-TTACCTAAATCACGAGAAAAAT
* * * * * * * *
72057 GTTAATAAACTGATAGATTCTCACAAACTGATACATCAGTTT-T-TACAGATAGATAGATTCTTA
65 GTTAATAGACT-AAAGATTCTCACAAACTGATAAATCACTTTATAGATAGACAGACAGATTCTTA
* * * *
72120 TAAACCAACAATTCACTGCTGAATTTGTTTAAATTTCAAATGAAAATTGATAGATGTTAAATATA
129 TAAACCAACAATTCACTGCTGAATTTGTTTAAATTTCAAATGAAAACTAATAGACG-TAAATA-C
* * *
72185 AAAAAAATGTGTAATTGT-TTATAGAGAGACTTATTCGTAAAAATCTAA
192 AAAAACACGTGTAATTGTCTTATAGAGAGACTTATTCATAAAAATCT-A
* *
72233 AAAGGCATGAAGCTAATTTTCTATTTGAAAACGTTTAATGCAT-TTACCTAAATCACGAGAAAAA
1 AAAGGTATGAAACTAATTTTCTATTTGAAAACGTTTAAT--ATATTACCTAAATCACGAGAAAAA
* * * * * * **
72297 TGTTAATAGACTGACAGATTCTCATAAACTTATACACCACTGTATAGATAGAC--A-A-ATTAAT
64 TGTTAATAGACT-AAAGATTCTCACAAACTGATAAATCACTTTATAGATAGACAGACAGATTCTT
* * * *
72358 ATAAACCAACAATTCACTGATGAATTAGTTTAAATTTCAAAAG-AAACTAATAAACGTCAAATAC
128 ATAAACCAACAATTCACTGCTGAATTTGTTTAAATTTCAAATGAAAACTAATAGACGT-AAATAC
* * * *
72422 -AAAACACGTGCAATTGTCTATATAGCGAGATTTATTCATAAAAATCTT
192 AAAAACACGTGTAATTGTCT-TATAGAGAGACTTATTCATAAAAATCTA
*
72470 AAAGGTATGAAACTAATTTTATATTTGAAAACGTTTAATATATTACCT-AATCACGAGAAAAAAT
1 AAAGGTATGAAACTAATTTTCTATTTGAAAACGTTTAATATATTACCTAAATCACGAG-AAAAAT
* *
72534 -TTAATAGAC-AAACATTTTCACAAACTGATAAATCACTTTATAGATAGACAGACAGATTCTTAT
65 GTTAATAGACTAAAGATTCTCACAAACTGATAAATCACTTTATAGATAGACAGACAGATTCTTAT
* *
72597 AAATCAACAATTCACTG-TAGCATTTGTTTAAATTTCAAATG--AA--AAT-----TAAATACAA
130 AAACCAACAATTCACTGCT-GAATTTGTTTAAATTTCAAATGAAAACTAATAGACGTAAATACAA
* * *
72652 AAACACGTGTAATTATC-TATAGAGAGGCTTATTCATAAAAAACTA
194 AAACACGTGTAATTGTCTTATAGAGAGACTTATTCATAAAAATCTA
** * *** *
72697 AAATATATGAAACTAACTTTCTATAAAAAAACGTTTAATGTATTCACCTAAATCACGAGAAAAAT
1 AAAGGTATGAAACTAATTTTCTATTTGAAAACGTTTAATATATT-ACCTAAATCACGAGAAAAAT
** * * * * * *
72762 GTTAATAGACTAACAGATTCTCACAAACAAACAAAT--CTCTGTACAT--ATAGACATATTCTTA
65 GTTAATAGACTAA-AGATTCTCACAAACTGATAAATCACTTTATAGATAGACAGACAGATTCTTA
* * *
72823 TAAATCAACAATTCACTGCTGATTTTGCTTAAATTTCAAATGAAAACTAATAGACGTTAAATACA
129 TAAACCAACAATTCACTGCTGAATTTGTTTAAATTTCAAATGAAAACTAATAGACG-TAAATACA
* * *
72888 AAAACACATGTAATTGTCTACATGTAATTGTCTATAGAGACTTATTCAT-AAAAGCTAA
193 AAAACACGTGTAATTG--T-C-T-T-A-----TAGAGAGACTTATTCATAAAAATCT-A
* * *
72946 AAAAGTAAGAAACTGAAACTGACTTTCTATTCGAAAACGTTTAATGCAT-TTACCTAAATCACGA
1 AAAGGTATGAAACT--AA-T---TTTCTATTTGAAAACGTTTAAT--ATATTACCTAAATCACGA
* * * * * *
73010 GAAACATGTTAGTTA-ACTGACAA-ATTCTCACAAATTGAT-AATCAC-TT-TACAT--ATAGAT
58 GAAAAATGTTA-ATAGACT-A-AAGATTCTCACAAACTGATAAATCACTTTATAGATAGACAGAC
* * * * * * * * *
73068 AGATTCTTATAAATCGACAGTTTATTGTTGAATTTGTTTAAATTTCAAATGAAAATTAATAAATG
120 AGATTCTTATAAACCAACAATTCACTGCTGAATTTGTTTAAATTTCAAATGAAAACTAATAGACG
* *
73133 TTAAATAC-AAAACACGTGTAATT-ACCTATAGAGAGACTTATTCATAAAAATCTAA
185 -TAAATACAAAAACACGTGTAATTGTCTTATAGAGAGACTTATTCATAAAAATCT-A
* * * * * *
73188 AAAGATATGAAACTAACTTTCCATTCGAAAACGTTTAATGCAT-TTACGTAAATCACGAGAAACA
1 AAAGGTATGAAACTAATTTTCTATTTGAAAACGTTTAAT--ATATTACCTAAATCACGAGAAAAA
** * * *
73252 TGTTAGCAGACTGACAGATTCTCACAAATTGATAAATCAACTTTACAGATAGACA
64 TGTTAATAGACT-AAAGATTCTCACAAACTGATAAATC-ACTTTATAGATAGACA
73307 TATTCTCAAA
Statistics
Matches: 881, Mismatches: 127, Indels: 131
0.77 0.11 0.12
Matches are distributed among these distances:
227 109 0.12
228 17 0.02
229 44 0.05
230 2 0.00
231 20 0.02
233 32 0.04
234 3 0.00
235 23 0.03
236 101 0.11
237 105 0.12
238 40 0.05
239 47 0.05
240 7 0.01
241 108 0.12
242 22 0.02
243 6 0.01
244 1 0.00
246 1 0.00
247 1 0.00
248 6 0.01
249 28 0.03
251 2 0.00
253 14 0.02
254 75 0.09
255 58 0.07
256 7 0.01
257 2 0.00
ACGTcount: A:0.43, C:0.14, G:0.11, T:0.32
Consensus pattern (239 bp):
AAAGGTATGAAACTAATTTTCTATTTGAAAACGTTTAATATATTACCTAAATCACGAGAAAAATG
TTAATAGACTAAAGATTCTCACAAACTGATAAATCACTTTATAGATAGACAGACAGATTCTTATA
AACCAACAATTCACTGCTGAATTTGTTTAAATTTCAAATGAAAACTAATAGACGTAAATACAAAA
ACACGTGTAATTGTCTTATAGAGAGACTTATTCATAAAAATCTA
Found at i:72912 original size:14 final size:14
Alignment explanation
Indices: 72893--72921 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
72883 ATACAAAAAC
72893 ACATGTAATTGTCT
1 ACATGTAATTGTCT
72907 ACATGTAATTGTCT
1 ACATGTAATTGTCT
72921 A
1 A
72922 TAGAGACTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.31, C:0.14, G:0.14, T:0.41
Consensus pattern (14 bp):
ACATGTAATTGTCT
Found at i:73429 original size:236 final size:236
Alignment explanation
Indices: 71992--73410 Score: 923
Period size: 236 Copynumber: 5.9 Consensus size: 236
71982 TTGTTGGGAG
* * * * * * *
71992 AAAGGTATGAAACTAATTTTCTATTTGAAAACATTTAATACATTTACCTAAATTACGAGAAACAT
1 AAAGATATGAAACTAACTTTCCATTCGAAAACGTTTAATGCATTTACCTAAATCACGAGAAACAT
* * * * * * * *
72057 GTTAATAAACTGATAGATTCTCACAAACTGATACATCAGTTTTTACAGATAGATAGATTCTTATA
66 GTTAGTCAACTGACAAATTCTCACAAATTGATA-ATCA--CTTTACAGATAGACAGATTCTCATA
* * *** * * * * *
72122 AACCAACAATTCACTGCTGAATTTGTTTAAATTTCAAATGAAAATTG-ATAGATGTTAAATATAA
128 AATCGACAATTCACCATTGAATTTATTTAAATTTCAAAT-AAAAATGAATAAACGTT-AA-ATAC
* * *** *
72186 AAAAAATGTGTAATTGTTTATAGAGAGACTTATTCGTAAAAATCTAA
190 AAAACACGTGTAATTACCTATAGAGAGACTTATTCATAAAAATCTAA
** * * * * *
72233 AAAGGCATGAAGCTAATTTTCTATTTGAAAACGTTTAATGCATTTACCTAAATCACGAGAAAAAT
1 AAAGATATGAAACTAACTTTCCATTCGAAAACGTTTAATGCATTTACCTAAATCACGAGAAACAT
* * * * * * * *
72298 GTTAAT-AGACTGACAGATTCTCATAAACTT-ATACACCACTGTATAGATAGACAAATTAAT-AT
66 GTTAGTCA-ACTGACAAATTCTCACAAA-TTGATA-ATCACTTTACAGATAGACAGATT-CTCAT
* * * * *
72360 AAACCAACAATTCACTGA-TGAA-TTAGTTTAAATTTCAAA-AGAAACT-AATAAACGTCAAATA
127 AAATCGACAATTCAC-CATTGAATTTA-TTTAAATTTCAAATA-AAAATGAATAAACGTTAAATA
* * * * * *
72421 CAAAACACGTGCAATTGTCTATATAGCGAGATTTATTCATAAAAATCT-T
189 CAAAACACGTGTAATT-AC-CTATAGAGAGACTTATTCATAAAAATCTAA
* * ** *
72470 AAAGGTATGAAACTAATTTTATATTTGAAAACGTTTAAT--ATATTACCT-AATCACGAGAAA-A
1 AAAGATATGAAACTAACTTTCCATTCGAAAACGTTTAATGCAT-TTACCTAAATCACGAGAAACA
** * * *
72531 AATT--T-AA-TAGACAAACATTTTCACAAACTGATAAATCACTTTATAGATAGACAGACAGATT
65 TGTTAGTCAACT-GAC-AA-ATTCTCACAAATTGAT-AATCACTTTACAGAT----AGACAGATT
* * ** * * *
72592 CTTATAAATCAACAATTCACTGTAGCATTTGTTTAAATTTC------AAATG-A-AAA--TTAAA
122 CTCATAAATCGACAATTCACCATTGAATTTATTTAAATTTCAAATAAAAATGAATAAACGTTAAA
* * *
72647 TACAAAAACACGTGTAATTATCTATAGAGAGGCTTATTCATAAAAAACT-A
187 TAC-AAAACACGTGTAATTACCTATAGAGAGACTTATTCATAAAAATCTAA
* * *** * * *
72697 AAATATATGAAACTAACTTTCTATAAAAAAACGTTTAATGTATTCACCTAAATCACGAGAAAAAT
1 AAAGATATGAAACTAACTTTCCATTCGAAAACGTTTAATGCATTTACCTAAATCACGAGAAACAT
* * * *** * * * * * *
72762 GTTAAT-AGACTAACAGATTCTCACAAACAAACAAATCTCTGTACATATAGACATATTCTTATAA
66 GTTAGTCA-ACTGACAAATTCTCACAAATTGA-TAATCACTTTACAGATAGACAGATTCTCATAA
* *** * ** * *
72826 ATCAACAATTCACTGCTGATTTTGCTTAAATTTCAAATGAAAACT-AATAGACGTTAAATACAAA
129 ATCGACAATTCACCATTGAATTTATTTAAATTTCAAAT-AAAAATGAATAAACGTTAAATAC-AA
* * * *
72890 AACACATGTAATTGTCTACATGTAATTGTCTATAGAGACTTATTCAT-AAAAGCTAAAAA
192 AACACGTGTAA---T-TAC--CT-A-----TAGAGAGACTTATTCATAAAAATCT---AA
* * *
72949 AGTAAGAAACTGAAACTGACTTTCTATTCGAAAACGTTTAATGCATTTACCTAAATCACGAGAAA
1 A--AAGATA-TGAAACTAACTTTCCATTCGAAAACGTTTAATGCATTTACCTAAATCACGAGAAA
* * * *
73014 CATGTTAGTTAACTGACAAATTCTCACAAATTGATAATCACTTTACATATAGATAGATTCTTATA
63 CATGTTAGTCAACTGACAAATTCTCACAAATTGATAATCACTTTACAGATAGACAGATTCTCATA
* * *** * * * *
73079 AATCGACAGTTTATTGTTGAATTTGTTTAAATTTCAAATGAAAATTAATAAATGTTAAATACAAA
128 AATCGACAATTCACCATTGAATTTATTTAAATTTCAAATAAAAATGAATAAACGTTAAATACAAA
73144 ACACGTGTAATTACCTATAGAGAGACTTATTCATAAAAATCTAA
193 ACACGTGTAATTACCTATAGAGAGACTTATTCATAAAAATCTAA
*
73188 AAAGATATGAAACTAACTTTCCATTCGAAAACGTTTAATGCATTTACGTAAATCACGAGAAACAT
1 AAAGATATGAAACTAACTTTCCATTCGAAAACGTTTAATGCATTTACCTAAATCACGAGAAACAT
* *
73253 GTTAG-CAGACTGACAGATTCTCACAAATTGATAAATCAACTTTACAGATAGACATATTCTCA-A
66 GTTAGTCA-ACTGACAAATTCTCACAAATTGAT-AATC-ACTTTACAGATAGACAGATTCTCATA
*
73316 AATC-ACAATTCGCCATTGAATTTATTTAAAATTTC-AATAAAAATGAATAAACGTTAAATACAA
128 AATCGACAATTCACCATTGAATTTATTT-AAATTTCAAATAAAAATGAATAAACGTTAAATACAA
*
73379 AACACGTGTAGA-TATCTATA-AGATGACTTATT
192 AACACGTGTA-ATTACCTATAGAGA-GACTTATT
73411 TATGACAACT
Statistics
Matches: 952, Mismatches: 154, Indels: 149
0.76 0.12 0.12
Matches are distributed among these distances:
227 99 0.10
228 12 0.01
229 28 0.03
230 7 0.01
231 31 0.03
232 7 0.01
233 26 0.03
234 9 0.01
235 20 0.02
236 171 0.18
237 118 0.12
238 58 0.06
239 51 0.05
240 3 0.00
241 107 0.11
242 7 0.01
243 1 0.00
244 1 0.00
246 1 0.00
247 1 0.00
248 6 0.01
249 18 0.02
250 1 0.00
252 2 0.00
253 16 0.02
254 76 0.08
255 74 0.08
256 1 0.00
ACGTcount: A:0.44, C:0.14, G:0.11, T:0.32
Consensus pattern (236 bp):
AAAGATATGAAACTAACTTTCCATTCGAAAACGTTTAATGCATTTACCTAAATCACGAGAAACAT
GTTAGTCAACTGACAAATTCTCACAAATTGATAATCACTTTACAGATAGACAGATTCTCATAAAT
CGACAATTCACCATTGAATTTATTTAAATTTCAAATAAAAATGAATAAACGTTAAATACAAAACA
CGTGTAATTACCTATAGAGAGACTTATTCATAAAAATCTAA
Done.