genome.fa.s5890.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005890.1 Hibiscus syriacus cultivar Beakdansim tig00013830_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53036

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5706--5747	21	2.0	21	82	13	52	50	26	7	16	1.71
5817--5869	24	2.2	24	86	0	70	54	18	13	13	1.70
15064--15117	20	2.7	19	75	8	63	33	31	18	16	1.93
15102--15199	21	4.7	21	69	15	69	37	20	21	20	1.94
15167--15378	20	10.5	20	75	9	117	37	24	17	20	1.94
15228--15378	20	7.4	21	81	6	127	37	24	17	20	1.94
15204--15356	61	2.5	60	80	7	166	37	24	16	21	1.94
15228--15356	41	3.2	41	82	1	152	37	24	17	20	1.93
16233--16286	24	2.2	24	93	0	90	20	18	20	40	1.91
18802--18966	33	4.7	33	77	12	177	44	20	21	13	1.85
18806--18970	19	9.3	19	69	19	106	44	20	21	13	1.85
18831--18968	73	1.9	72	87	4	204	43	21	21	14	1.87
18966--19028	19	3.3	19	91	4	92	14	17	23	44	1.85
18976--19060	19	4.7	19	79	16	92	11	21	21	45	1.83
19158--19194	14	2.6	14	91	0	65	45	21	0	32	1.52
20546--20654	21	5.2	21	63	18	57	22	19	36	22	1.95
20546--20681	42	3.2	42	89	4	186	22	19	36	21	1.96
20609--20675	21	3.2	21	64	16	57	22	19	37	20	1.95
20585--20706	42	2.9	42	91	2	156	23	17	38	20	1.93
20546--20706	84	1.9	84	80	7	184	23	18	36	21	1.95
21131--21194	19	3.6	19	72	20	75	45	23	21	9	1.81
21191--21253	19	3.3	19	84	4	83	12	17	25	44	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21235--21300	31	2.0	33	88	8	100	12	22	21	43	1.85
21201--21300	17	5.8	17	84	9	107	11	21	23	45	1.83
21388--21765	93	4.1	94	93	2	620	46	18	12	21	1.82
21388--21765	187	2.0	187	91	2	618	46	18	12	21	1.82
23469--23524	20	2.8	20	84	10	87	39	21	25	14	1.91
23509--23564	14	3.6	14	74	21	58	42	23	25	8	1.82
23460--23619	19	9.1	19	68	21	98	43	20	23	12	1.85
23460--23614	33	4.5	33	88	5	211	44	20	23	12	1.84
23627--23698	20	3.5	20	84	5	92	12	16	19	51	1.76
24280--24531	20	12.5	20	76	12	203	20	18	23	37	1.94
24268--24372	40	2.6	40	87	3	140	23	19	20	37	1.94
24280--24410	60	2.2	60	94	0	226	22	19	22	35	1.96
24305--24470	41	4.1	41	88	2	221	19	19	24	36	1.95
24340--24531	81	2.4	82	82	6	223	18	18	25	38	1.93
27797--27857	31	2.0	31	93	0	104	55	9	6	27	1.57
30464--30523	7	8.9	7	92	7	106	41	0	15	43	1.46
34926--35005	36	2.2	36	91	2	126	45	17	5	32	1.70
34944--35004	21	3.2	21	63	26	53	47	14	4	32	1.66
39502--39562	21	3.2	20	63	27	51	49	14	4	31	1.65
39493--39563	36	2.0	35	94	2	124	47	15	5	30	1.68
41019--41073	22	2.5	22	96	0	101	27	12	18	41	1.86
51899--51924	10	2.6	10	100	0	52	42	0	7	50	1.31

Tables:   1

The End!