genome.fa.s5891.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005891.1 Hibiscus syriacus cultivar Beakdansim tig00013832_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  189764

Tables:   1   

This is table  1  of  1  ( 105 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12914--13042	30	4.3	29	87	6	177	19	23	44	13	1.85
16797--16847	15	3.3	15	81	10	59	68	0	0	31	0.90
16806--16840	5	6.8	5	87	6	52	65	0	0	34	0.93
20368--20392	3	8.3	3	100	0	50	32	36	0	32	1.58
22870--22908	16	2.4	16	95	0	69	30	5	12	51	1.62
28356--28400	23	2.0	23	82	8	56	22	4	4	68	1.25
28567--28598	2	16.0	2	100	0	64	50	0	0	50	1.00
30272--30315	23	1.9	23	90	0	70	36	0	0	63	0.95
30250--30307	16	3.4	16	75	20	55	36	1	0	62	1.06
30273--30324	21	2.5	21	79	14	63	36	0	0	63	0.95
30366--30408	19	2.2	20	80	19	56	25	2	2	69	1.12
35221--35334	60	1.9	60	81	3	140	56	5	3	35	1.39
39594--39662	23	3.0	23	89	0	102	26	26	27	20	1.99
39681--39895	103	2.1	103	97	0	403	37	24	12	26	1.91
40008--40060	24	2.2	24	83	9	65	41	24	3	30	1.72
44832--44900	23	3.0	23	84	0	93	27	26	26	20	1.99
44919--45128	103	2.0	103	96	0	384	36	24	13	26	1.92
51323--51737	202	2.0	205	90	4	658	27	17	16	38	1.92
51932--51956	12	2.1	12	100	0	50	20	16	24	40	1.91
56782--56913	65	2.0	65	97	2	248	21	9	25	43	1.82
59817--60030	103	2.1	104	97	1	403	18	17	17	46	1.84
76394--76434	21	2.0	21	100	0	82	39	14	14	31	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76499--76549	17	3.0	17	83	11	52	49	0	1	49	1.12
78863--79014	38	3.9	38	75	15	130	45	5	3	44	1.46
78983--79055	26	2.9	26	79	16	75	41	4	4	50	1.40
81200--81239	16	2.6	16	88	4	55	37	12	20	30	1.89
82054--82264	107	2.0	107	99	0	413	29	12	24	33	1.92
85031--85069	20	2.0	20	89	0	60	35	17	2	43	1.63
90881--90928	21	2.3	21	92	0	78	43	12	16	27	1.84
95484--95531	21	2.3	21	96	0	87	41	12	18	27	1.86
97107--97153	9	5.3	9	87	5	60	44	0	0	55	0.99
97118--97151	3	11.7	3	87	6	52	38	0	0	61	0.96
97190--97247	22	2.6	22	91	2	71	39	34	12	13	1.82
97197--97247	22	2.3	22	100	0	102	37	37	11	13	1.82
100743--100793	24	2.1	25	82	10	61	49	1	0	49	1.12
100825--100867	21	2.0	21	100	0	86	32	4	32	30	1.78
101361--101389	2	14.5	2	100	0	58	48	0	0	51	1.00
103102--103226	49	2.6	49	79	5	137	28	27	17	27	1.98
105445--105490	14	3.0	16	78	15	53	41	4	0	54	1.20
105483--105535	20	2.7	20	91	2	81	73	1	0	24	0.93
105490--105534	9	4.6	10	84	13	58	75	2	0	22	0.91
105498--105535	11	3.6	11	86	13	62	76	0	0	23	0.79
107845--107976	62	2.1	62	80	5	142	31	22	8	37	1.84
110084--110564	242	2.0	242	96	0	881	32	15	16	35	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
111720--111787	28	2.4	28	100	0	136	44	2	19	33	1.66
112540--112646	24	4.5	24	74	0	106	49	16	13	20	1.79
112540--112648	48	2.3	48	78	0	128	49	16	13	20	1.79
114772--114848	29	2.7	29	87	0	109	44	20	5	29	1.73
116726--116756	2	15.5	2	100	0	62	51	0	0	48	1.00
116917--117023	24	4.5	24	73	0	97	47	15	14	21	1.82
116917--117025	48	2.3	48	77	0	119	47	15	15	21	1.82
119601--119801	29	6.9	29	84	5	235	45	20	8	24	1.79
120852--120903	19	2.7	19	96	0	95	53	0	7	38	1.30
122366--122438	20	3.6	20	74	15	69	24	19	32	23	1.97
122290--122511	95	2.3	94	81	8	236	31	18	24	25	1.98
122462--122515	21	2.7	21	86	13	71	37	16	24	22	1.94
122955--123019	34	1.9	34	83	0	85	41	10	21	26	1.86
122989--123289	45	6.7	45	85	6	394	40	9	18	30	1.83
122989--123289	90	3.3	89	90	3	435	40	9	18	30	1.83
122989--123289	135	2.2	134	87	4	437	40	9	18	30	1.83
122989--123332	90	3.8	90	83	8	380	41	8	17	31	1.80
122993--123332	135	2.5	134	83	5	366	41	8	17	31	1.80
141436--141470	17	2.1	17	100	0	70	34	0	54	11	1.37
141492--141525	10	3.4	10	87	0	50	41	0	8	50	1.34
143333--143389	26	2.2	26	81	12	73	71	0	3	24	1.01
143334--143399	26	2.5	28	78	7	66	71	1	4	22	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
143411--143440	13	2.2	14	94	5	53	83	0	0	16	0.65
144847--146170	106	12.7	105	88	4	1889	22	18	25	33	1.97
149915--149971	26	2.2	26	81	12	73	71	0	3	24	1.01
149916--149981	26	2.5	28	78	7	66	71	1	4	22	1.13
149993--150022	13	2.2	14	94	5	53	83	0	0	16	0.65
157430--157475	23	2.0	23	86	0	65	34	2	4	58	1.30
157515--157805	37	8.1	36	75	13	196	46	3	5	44	1.43
157590--157654	27	2.5	27	82	5	80	47	4	3	44	1.39
157616--157805	37	5.1	37	84	6	224	46	4	4	44	1.43
157763--157827	26	2.4	27	82	12	71	41	3	3	52	1.32
157801--157864	33	1.9	34	90	3	103	39	4	4	51	1.44
157845--157938	39	2.5	37	83	13	127	43	2	4	50	1.33
157941--157991	4	13.2	4	76	15	54	27	0	1	70	0.98
157939--157991	14	3.8	14	82	7	63	28	0	1	69	0.99
164725--164773	20	2.5	20	100	0	98	46	4	4	44	1.41
165915--165961	18	2.7	18	90	3	69	36	8	27	27	1.86
165950--166033	44	1.9	44	92	0	141	29	13	21	35	1.91
166531--166643	28	3.5	33	84	12	155	44	35	8	11	1.72
170400--170477	6	13.2	6	83	2	68	32	24	0	43	1.54
170685--170734	24	2.1	24	85	7	66	38	18	22	22	1.94
170728--170788	19	3.0	20	80	9	70	31	21	26	21	1.98
170730--170803	22	3.5	20	74	20	62	29	20	25	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
170728--170820	45	2.2	41	76	7	96	32	20	24	22	1.98
172284--172325	21	2.0	21	95	0	75	30	23	26	19	1.98
173662--173702	3	14.0	3	87	5	57	68	2	29	0	1.03
175316--175355	21	1.9	21	89	0	62	30	10	10	50	1.69
175643--175695	17	3.0	17	78	8	61	22	32	16	28	1.96
177378--177423	22	2.1	21	96	4	83	45	19	17	17	1.85
177470--177512	21	2.0	22	90	4	70	25	34	23	16	1.95
178353--178415	30	2.1	30	93	0	108	33	22	4	39	1.75
181269--181311	21	2.0	21	90	0	68	16	16	20	46	1.84
181326--181370	20	2.2	20	84	0	54	48	20	6	24	1.73
181526--181572	22	2.1	22	96	0	85	25	40	10	23	1.87
183552--183660	20	5.4	20	68	16	73	35	13	21	29	1.92
183531--183658	40	3.2	40	74	7	125	36	12	21	29	1.90
183604--183782	20	8.9	20	76	10	109	26	13	25	34	1.94
183604--183782	61	3.0	61	73	16	158	26	13	25	34	1.94
183732--183780	19	2.5	19	86	3	62	22	14	30	32	1.93
189475--189511	10	3.6	10	96	3	65	62	18	0	18	1.34

Tables:   1

The End!