genome.fa.s5892.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005892.1 Hibiscus syriacus cultivar Beakdansim tig00013833_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83474

Tables:   1   

This is table  1  of  1  ( 76 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1014--1140	60	2.1	60	80	7	141	30	14	15	39	1.87
1205--1351	60	2.5	60	76	8	156	35	14	14	35	1.87
4153--4268	51	2.3	50	82	4	135	18	31	27	22	1.97
4528--4574	13	3.3	14	77	14	51	25	0	4	70	1.05
7904--7976	26	2.8	26	67	24	64	64	4	6	24	1.36
10002--10222	110	2.0	111	93	0	381	46	9	8	35	1.67
10346--10386	10	4.1	10	84	12	57	39	0	29	31	1.57
10509--10628	51	2.4	49	81	5	132	20	28	33	18	1.96
12291--12391	42	2.4	42	100	0	202	45	1	7	44	1.44
14717--14772	20	2.8	20	73	10	60	37	30	10	21	1.87
15463--15520	20	2.9	20	92	0	89	50	18	15	15	1.79
15487--15540	20	2.7	20	79	0	54	48	24	16	11	1.79
15543--15580	20	1.9	20	89	10	60	34	13	18	34	1.89
15566--15656	20	4.8	20	68	20	61	16	14	17	51	1.76
15637--15665	14	2.1	14	100	0	58	10	13	27	48	1.75
17196--17298	39	2.5	42	76	12	115	27	34	16	21	1.95
17398--17567	21	8.1	21	71	7	112	20	12	33	32	1.91
17850--17961	21	5.3	20	77	12	100	22	35	12	29	1.91
17850--17957	42	2.6	42	82	2	128	22	34	12	30	1.92
20213--20246	12	2.8	12	90	0	50	14	0	29	55	1.40
21051--21178	39	3.2	40	78	11	120	34	11	22	31	1.90
21111--21179	20	3.5	20	71	15	63	33	10	24	31	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25357--25431	21	3.6	21	90	0	114	28	20	24	28	1.99
25455--25496	21	2.0	21	100	0	84	33	23	19	23	1.97
26070--26102	15	2.2	15	100	0	66	0	21	51	27	1.48
26548--26592	19	2.4	19	85	7	56	55	6	4	33	1.46
27695--27745	18	2.9	18	75	13	52	29	25	7	37	1.84
32496--32534	21	1.9	21	85	15	55	46	10	5	38	1.60
42889--42929	16	2.6	16	88	0	55	36	9	7	46	1.65
43319--43354	18	1.9	18	88	5	54	11	0	11	77	0.99
48712--48869	21	7.8	20	72	7	86	38	25	17	18	1.92
48836--49105	20	13.5	20	83	4	276	36	24	19	19	1.95
49787--49833	24	2.0	24	87	8	69	25	14	21	38	1.92
50008--50032	12	2.1	12	100	0	50	72	0	28	0	0.86
52367--52464	19	5.4	19	84	13	143	14	22	17	45	1.84
52348--52464	53	2.2	53	98	1	227	13	23	17	44	1.85
52571--52607	14	2.6	14	91	0	65	45	21	0	32	1.52
54557--54613	14	3.7	14	77	20	60	45	22	21	10	1.82
54538--54629	33	2.8	33	93	1	159	46	21	20	10	1.81
54501--54634	19	7.6	19	77	16	119	45	23	19	11	1.82
54630--54758	19	7.3	19	75	17	125	8	17	28	45	1.77
54630--54721	33	2.8	33	93	3	150	7	18	28	45	1.76
54802--55182	93	4.1	93	98	0	735	45	18	12	22	1.83
56889--56978	14	5.7	14	74	23	81	42	23	25	8	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56881--56995	33	3.5	33	95	0	212	45	20	24	9	1.81
56888--57000	19	6.8	18	72	23	88	43	22	24	9	1.83
57012--57065	14	3.5	14	73	22	54	7	25	24	42	1.80
56996--57076	33	2.5	33	93	0	135	7	23	22	46	1.76
57052--57129	41	1.9	41	94	0	138	11	26	16	44	1.82
57053--57128	21	3.7	21	82	3	100	10	26	17	46	1.80
57208--57278	33	2.2	33	89	0	106	47	16	23	11	1.79
57460--57514	22	2.5	22	81	0	74	20	16	40	23	1.91
57660--57853	20	9.6	20	82	5	221	19	19	25	35	1.95
57660--57853	60	3.2	60	83	0	253	19	19	25	35	1.95
57840--57922	21	4.0	21	73	6	78	25	16	24	33	1.96
57820--57918	42	2.4	43	77	11	100	21	18	23	37	1.94
62520--62559	1	40.0	1	89	0	53	0	0	7	92	0.38
63074--63110	17	2.2	17	95	0	65	43	13	18	24	1.86
63687--63789	32	3.1	34	80	14	115	42	0	8	48	1.34
63683--63840	32	5.2	32	71	23	112	39	0	8	51	1.33
63723--63911	54	3.5	54	94	0	333	35	0	11	52	1.41
63792--63894	32	3.5	32	72	24	118	35	0	10	52	1.43
63820--63862	22	2.0	22	100	0	86	39	0	9	51	1.34
63842--63991	80	1.9	80	94	0	264	34	0	12	52	1.43
63793--64045	134	1.9	134	95	0	461	36	0	11	52	1.40
63921--64029	32	3.7	31	72	23	110	39	0	10	50	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63927--64066	54	2.6	54	91	0	235	38	0	9	52	1.34
64008--64050	22	2.0	22	95	0	77	37	0	11	51	1.39
64075--64133	31	1.9	31	89	0	91	45	8	5	40	1.56
67033--67072	2	20.0	2	100	0	80	50	0	0	50	1.00
68087--68128	21	2.0	21	86	9	59	54	0	0	45	0.99
76648--76687	6	6.7	6	88	0	62	67	0	2	30	1.04
79816--79850	6	5.8	6	93	0	61	20	0	31	48	1.50
81221--81251	2	15.5	2	100	0	62	51	0	0	48	1.00
81773--81818	2	23.0	2	100	0	92	50	0	0	50	1.00
81885--82144	135	1.9	134	80	3	299	28	22	15	33	1.95

Tables:   1

The End!