genome.fa.s5893.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005893.1 Hibiscus syriacus cultivar Beakdansim tig00013834_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62287

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1063--1090	14	2.0	14	100	0	56	50	14	21	14	1.78
4978--5013	18	1.9	19	88	5	56	47	0	2	50	1.15
5016--5046	14	2.2	14	94	0	53	29	0	3	67	1.06
5973--6019	12	3.7	12	88	8	58	27	2	0	70	0.99
5966--6037	26	2.5	28	72	20	69	27	4	1	66	1.18
8049--8112	23	2.8	23	80	4	76	18	18	18	43	1.88
9777--9841	31	2.1	32	91	2	105	16	3	23	56	1.54
9889--9941	26	2.0	27	85	3	72	18	1	20	58	1.49
10811--11074	81	3.2	81	80	5	291	30	18	15	35	1.93
11085--11341	82	3.1	82	84	1	318	31	18	17	32	1.94
10894--11292	220	1.8	219	86	4	581	30	20	16	33	1.94
11454--11512	30	2.0	29	90	9	93	35	6	16	40	1.76
11709--11750	21	2.0	21	95	0	75	23	21	28	26	1.99
12002--12071	34	2.1	32	86	5	95	31	15	30	22	1.95
13209--13416	65	3.2	63	77	12	199	32	25	15	26	1.96
13656--13681	7	3.7	7	100	0	52	57	15	15	11	1.65
19182--19258	21	3.4	22	80	12	68	27	22	22	28	1.99
19199--19259	23	2.8	21	80	11	70	27	18	26	27	1.98
22043--22149	56	1.9	56	83	9	137	33	20	15	29	1.94
23283--24930	330	5.0	330	96	0	3038	35	18	16	29	1.93
30315--30366	20	2.5	21	81	3	61	40	19	23	17	1.91
30355--30468	20	5.7	20	83	6	113	31	25	18	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30352--30468	61	1.9	61	85	0	162	33	24	17	23	1.97
31024--31065	19	2.2	19	91	0	66	52	26	16	4	1.63
31061--31243	19	10.1	19	76	13	170	12	22	20	44	1.84
31061--31243	33	5.0	38	83	8	170	12	22	20	44	1.84
33245--33333	42	2.1	42	80	0	106	21	37	16	24	1.94
34713--34748	14	2.6	14	95	0	63	30	0	25	44	1.54
34863--34949	38	2.5	33	85	9	102	44	20	21	12	1.85
34863--34940	19	4.4	19	82	14	112	46	20	23	10	1.81
34945--35095	19	8.7	19	64	21	80	15	22	20	41	1.89
34949--35075	33	3.9	32	87	8	193	14	22	19	42	1.88
34942--35074	66	2.0	66	97	0	248	16	22	19	41	1.90
37367--37391	12	2.1	12	100	0	50	0	28	0	72	0.86
38676--38713	20	1.9	20	94	0	67	39	23	21	15	1.92
38732--38799	19	3.8	19	85	14	101	13	20	17	48	1.80
38713--38827	52	2.2	52	80	0	122	19	20	20	39	1.93
38916--38952	14	2.6	14	86	0	56	48	21	0	29	1.50
40819--40886	20	3.5	19	82	6	82	38	23	23	14	1.92
40875--40932	14	3.9	14	79	16	71	48	25	17	8	1.75
40859--40947	32	2.7	33	94	3	162	46	23	19	11	1.82
40950--41007	14	3.9	14	79	16	71	10	17	24	48	1.78
40952--41023	32	2.2	33	95	2	128	12	16	22	48	1.79
40966--41023	18	3.4	17	73	22	59	13	17	20	48	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41017--41062	20	2.3	20	88	0	65	15	21	26	36	1.93
41544--41588	18	2.5	18	88	0	72	13	15	44	26	1.83
42908--42965	20	2.9	20	81	0	62	43	20	17	18	1.89
43460--43512	20	2.7	20	93	0	88	24	18	28	28	1.98
44315--44359	20	2.2	20	84	4	54	37	13	24	24	1.91
44992--45053	31	2.0	30	81	9	72	43	1	0	54	1.09
49344--49376	17	1.9	17	88	11	50	15	3	15	66	1.37

Tables:   1

The End!