Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01005894.1 Hibiscus syriacus cultivar Beakdansim tig00013836_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 73627
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.32
Found at i:171 original size:23 final size:21
Alignment explanation
Indices: 110--165 Score: 73
Period size: 21 Copynumber: 2.7 Consensus size: 21
100 TGATGTCATC
110 AAAAATATT-T-AA-AAATAA
1 AAAAATATTATAAATAAATAA
128 AAAAATATTATAAATAAATAA
1 AAAAATATTATAAATAAATAA
149 AAAAATAATTATTAAAT
1 AAAAAT-ATTA-TAAAT
166 TTATAATTCA
Statistics
Matches: 33, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
18 9 0.27
19 1 0.03
20 2 0.06
21 12 0.36
22 4 0.12
23 5 0.15
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (21 bp):
AAAAATATTATAAATAAATAA
Found at i:6230 original size:202 final size:202
Alignment explanation
Indices: 5884--6287 Score: 772
Period size: 202 Copynumber: 2.0 Consensus size: 202
5874 TTGGAACTTC
5884 ATTTAAGGATGTTCATATTCCTTTCGATTCTTTGATGGGGGATTTAAAACTAGCAGACTTGAATG
1 ATTTAAGGATGTTCATATTCCTTTCGATTCTTTGATGGGGGATTTAAAACTAGCAGACTTGAATG
* **
5949 GCAATCTGAAAAAGAGGTCTCCACCTTCTTCTAGGTGGAGTCCTCCTCTGGAAGGGTTCTTAAAA
66 ACAATCTGAAAAAGAGGTCTCCACCTTCTTCTAGGTGGAGTCCTCCTCCAGAAGGGTTCTTAAAA
6014 GTAAACGTAGATGGTGCAATGGTCAAAGGTTGGGATAAGGGTGGAATAGGTGGATTGATTAGAGA
131 GTAAACGTAGATGGTGCAATGGTCAAAGGTTGGGATAAGGGTGGAATAGGTGGATTGATTAGAGA
6079 TGGCAGT
196 TGGCAGT
6086 ATTTAAGGATGTTCATATTCCTTTCGATTCTTTGATGGGGGATTTAAAACTAGCAGACTTGAATG
1 ATTTAAGGATGTTCATATTCCTTTCGATTCTTTGATGGGGGATTTAAAACTAGCAGACTTGAATG
6151 ACAATCTGAAAAAGAGGTCTCCACCTTCTTCTAGGTGGAGTCCTCCTCCAGAAGGGTTCTTAAAA
66 ACAATCTGAAAAAGAGGTCTCCACCTTCTTCTAGGTGGAGTCCTCCTCCAGAAGGGTTCTTAAAA
*
6216 GTAAACGTAGATGGTGCAATGGTCAAAGGTTGGGATAAGGGTGGAATAGGTGGATTGATTAGGGA
131 GTAAACGTAGATGGTGCAATGGTCAAAGGTTGGGATAAGGGTGGAATAGGTGGATTGATTAGAGA
6281 TGGCAGT
196 TGGCAGT
6288 GGTTCGGTGC
Statistics
Matches: 198, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
202 198 1.00
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.30
Consensus pattern (202 bp):
ATTTAAGGATGTTCATATTCCTTTCGATTCTTTGATGGGGGATTTAAAACTAGCAGACTTGAATG
ACAATCTGAAAAAGAGGTCTCCACCTTCTTCTAGGTGGAGTCCTCCTCCAGAAGGGTTCTTAAAA
GTAAACGTAGATGGTGCAATGGTCAAAGGTTGGGATAAGGGTGGAATAGGTGGATTGATTAGAGA
TGGCAGT
Found at i:27851 original size:31 final size:31
Alignment explanation
Indices: 27784--27843 Score: 97
Period size: 29 Copynumber: 2.0 Consensus size: 31
27774 CAATTTAAGG
*
27784 CAAAATGGTTTTTGGACTTGAATTGAATTTA
1 CAAAATGGTATTTGGACTTGAATTGAATTTA
27815 CAAAAT-GTATTTGGACTT-AATTGAATTTA
1 CAAAATGGTATTTGGACTTGAATTGAATTTA
27844 TTCAAAATTT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
29 11 0.39
30 11 0.39
31 6 0.21
ACGTcount: A:0.35, C:0.07, G:0.17, T:0.42
Consensus pattern (31 bp):
CAAAATGGTATTTGGACTTGAATTGAATTTA
Found at i:27935 original size:19 final size:19
Alignment explanation
Indices: 27908--27973 Score: 89
Period size: 19 Copynumber: 3.5 Consensus size: 19
27898 AATGGTTTTA
* *
27908 TGAATAGTAATTTACTATT
1 TGAACAGTAAATTACTATT
27927 TGAACAGTAAATTACTATT
1 TGAACAGTAAATTACTATT
*
27946 TGAGA-AGTAAATCACTATT
1 TGA-ACAGTAAATTACTATT
27965 TGAACAGTA
1 TGAACAGTA
27974 TCCCGAGGCT
Statistics
Matches: 42, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
18 1 0.02
19 40 0.95
20 1 0.02
ACGTcount: A:0.41, C:0.09, G:0.14, T:0.36
Consensus pattern (19 bp):
TGAACAGTAAATTACTATT
Found at i:28106 original size:21 final size:22
Alignment explanation
Indices: 28080--28122 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
28070 ATTTGAATAT
*
28080 TATGAA-GGGGTATCGATTCCC
1 TATGAAGGGGGTACCGATTCCC
28101 TATGAAGGGGGTACCGATTCCC
1 TATGAAGGGGGTACCGATTCCC
28123 CCCATTCTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 6 0.30
22 14 0.70
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (22 bp):
TATGAAGGGGGTACCGATTCCC
Found at i:29319 original size:31 final size:31
Alignment explanation
Indices: 29281--29405 Score: 198
Period size: 31 Copynumber: 4.0 Consensus size: 31
29271 CCCGAAGGAC
* *
29281 CAGTCCATA-GATTCCGAAGAACCTAGGTAAT
1 CAGTCCATATG-TTCCGAAGAACATAGGTAAA
* *
29312 CAGTCCATATGTCCCGAAGGACATAGGTAAA
1 CAGTCCATATGTTCCGAAGAACATAGGTAAA
29343 CAGTCCATATGTTCCGAAGAACATAGGTAAA
1 CAGTCCATATGTTCCGAAGAACATAGGTAAA
29374 CAGTCCATATGTTCCGAAGAACATAGGTAAA
1 CAGTCCATATGTTCCGAAGAACATAGGTAAA
29405 C
1 C
29406 CCTCGACCCT
Statistics
Matches: 87, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
31 86 0.99
32 1 0.01
ACGTcount: A:0.37, C:0.22, G:0.20, T:0.22
Consensus pattern (31 bp):
CAGTCCATATGTTCCGAAGAACATAGGTAAA
Found at i:29607 original size:23 final size:24
Alignment explanation
Indices: 29581--29627 Score: 78
Period size: 23 Copynumber: 2.0 Consensus size: 24
29571 ATATACTTGT
*
29581 TTTCACATATATA-TTTCATATCA
1 TTTCACATATACACTTTCATATCA
29604 TTTCACATATACACTTTCATATCA
1 TTTCACATATACACTTTCATATCA
29628 CAGGCCATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 12 0.55
24 10 0.45
ACGTcount: A:0.34, C:0.21, G:0.00, T:0.45
Consensus pattern (24 bp):
TTTCACATATACACTTTCATATCA
Found at i:30167 original size:21 final size:21
Alignment explanation
Indices: 30137--30180 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
30127 ATTCTGCCGT
* *
30137 TTGAAGGGGTATCGGTTCCCC
1 TTGAAGGGGTACCGATTCCCC
*
30158 TTGAATGGGTACCGATTCCCC
1 TTGAAGGGGTACCGATTCCCC
30179 TT
1 TT
30181 ACCCAGAAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.16, C:0.25, G:0.27, T:0.32
Consensus pattern (21 bp):
TTGAAGGGGTACCGATTCCCC
Found at i:33206 original size:31 final size:31
Alignment explanation
Indices: 33168--33292 Score: 198
Period size: 31 Copynumber: 4.0 Consensus size: 31
33158 CCCGAAGGAC
* *
33168 CAGTCCATA-GATTCCGAAGAACCTAGGTAAT
1 CAGTCCATATG-TTCCGAAGAACATAGGTAAA
* *
33199 CAGTCCATATGTCCCGAAGGACATAGGTAAA
1 CAGTCCATATGTTCCGAAGAACATAGGTAAA
33230 CAGTCCATATGTTCCGAAGAACATAGGTAAA
1 CAGTCCATATGTTCCGAAGAACATAGGTAAA
33261 CAGTCCATATGTTCCGAAGAACATAGGTAAA
1 CAGTCCATATGTTCCGAAGAACATAGGTAAA
33292 C
1 C
33293 CCTCGACCCT
Statistics
Matches: 87, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
31 86 0.99
32 1 0.01
ACGTcount: A:0.37, C:0.22, G:0.20, T:0.22
Consensus pattern (31 bp):
CAGTCCATATGTTCCGAAGAACATAGGTAAA
Found at i:33496 original size:23 final size:24
Alignment explanation
Indices: 33470--33516 Score: 78
Period size: 23 Copynumber: 2.0 Consensus size: 24
33460 ATATACTTGT
*
33470 TTTCACATATATA-TTTCATATCA
1 TTTCACATATACACTTTCATATCA
33493 TTTCACATATACACTTTCATATCA
1 TTTCACATATACACTTTCATATCA
33517 CAGGCCATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 12 0.55
24 10 0.45
ACGTcount: A:0.34, C:0.21, G:0.00, T:0.45
Consensus pattern (24 bp):
TTTCACATATACACTTTCATATCA
Found at i:34058 original size:21 final size:21
Alignment explanation
Indices: 34028--34071 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
34018 ATTCTGCCGT
* *
34028 TTGAAGGGGTATCGGTTCCCC
1 TTGAAGGGGTACCGATTCCCC
*
34049 TTGAATGGGTACCGATTCCCC
1 TTGAAGGGGTACCGATTCCCC
34070 TT
1 TT
34072 ACCCAGAAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.16, C:0.25, G:0.27, T:0.32
Consensus pattern (21 bp):
TTGAAGGGGTACCGATTCCCC
Found at i:35965 original size:2 final size:2
Alignment explanation
Indices: 35958--35998 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
35948 TACCAACTTC
35958 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
35999 CTTAATAAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:39696 original size:2 final size:2
Alignment explanation
Indices: 39691--39726 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
39681 ACTTTTTTAA
39691 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
39727 TAAATCTGAC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:49233 original size:35 final size:35
Alignment explanation
Indices: 49187--49266 Score: 126
Period size: 35 Copynumber: 2.3 Consensus size: 35
49177 AACACAATCA
49187 TCAATTACATTCTAAACCTCAAAATT-CAAAATACT
1 TCAATTACATTCTAAACCTC-AAATTCCAAAATACT
**
49222 TCAATTACATTCTAAACCTCAAATTCCAAAATGTT
1 TCAATTACATTCTAAACCTCAAATTCCAAAATACT
49257 TCAATTACAT
1 TCAATTACAT
49267 GCCCAACCCC
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
34 5 0.12
35 37 0.88
ACGTcount: A:0.42, C:0.23, G:0.01, T:0.34
Consensus pattern (35 bp):
TCAATTACATTCTAAACCTCAAATTCCAAAATACT
Found at i:49280 original size:35 final size:35
Alignment explanation
Indices: 49187--49282 Score: 95
Period size: 35 Copynumber: 2.7 Consensus size: 35
49177 AACACAATCA
* * *
49187 TCAATTACATTCTAAACCTCAAAATT-CAAAATACT
1 TCAATTACATGCCAAACC-CCAAATTCCAAAATACT
* * * **
49222 TCAATTACATTCTAAACCTCAAATTCCAAAATGTT
1 TCAATTACATGCCAAACCCCAAATTCCAAAATACT
*
49257 TCAATTACATGCCCAACCCCAAATTC
1 TCAATTACATGCCAAACCCCAAATTC
49283 ATAATCCATT
Statistics
Matches: 52, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
34 5 0.10
35 47 0.90
ACGTcount: A:0.41, C:0.27, G:0.02, T:0.30
Consensus pattern (35 bp):
TCAATTACATGCCAAACCCCAAATTCCAAAATACT
Found at i:49705 original size:148 final size:142
Alignment explanation
Indices: 49437--49723 Score: 448
Period size: 148 Copynumber: 2.0 Consensus size: 142
49427 AAATACTCAA
* * ** *
49437 TTCAGTTTATAAAATAGTTGACTCTAATTTTTTTTATTTGAGTTTATAAAATTTAAATAAAGTTG
1 TTCAGTTTATAAAATAATTGACTCAAATTTTTTCGATTTGAGTTTATAAAATTTAAATAAAATTG
* *
49502 AATTGAATTTTCGAGTTTCTGTTTAAATTTAATTATAAATATTTATCATATTATAATATTATTTG
66 AATTGAATTTTCGAGTTTCTGTTTAAATTTAATTATAAATATTTATAATACTATAATATTATTTG
49567 ATTCCAATTCAG
131 ATTCCAATTCAG
49579 TTCAGTTTATAAAATAATTGACTCGAAATTTTTTCGATTTGAGTTTATAAAATTTAAATCAAGTC
1 TTCAGTTTATAAAATAATTGACTC-AAATTTTTTCGATTTGAGTTTATAAAATTTAAAT-AA---
49644 GAATTGAATTGAATTTTCGAGTTTCTGTTTAAATTTAATTATAAATATTTATAATACTATAATAT
61 -AATTGAATTGAATTTTCGAGTTTCTGTTTAAATTTAATTATAAATATTTATAATACTATAATAT
*
49709 TATTTGATTCTAATT
125 TATTTGATTCCAATT
49724 TAAATAGTTT
Statistics
Matches: 131, Mismatches: 8, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
142 23 0.18
143 31 0.24
144 2 0.02
148 75 0.57
ACGTcount: A:0.36, C:0.07, G:0.09, T:0.48
Consensus pattern (142 bp):
TTCAGTTTATAAAATAATTGACTCAAATTTTTTCGATTTGAGTTTATAAAATTTAAATAAAATTG
AATTGAATTTTCGAGTTTCTGTTTAAATTTAATTATAAATATTTATAATACTATAATATTATTTG
ATTCCAATTCAG
Found at i:50244 original size:35 final size:35
Alignment explanation
Indices: 50205--50300 Score: 115
Period size: 35 Copynumber: 2.7 Consensus size: 35
50195 AATGGATTAT
* *
50205 GAATTTGAGGTTGGGCATGTAATTGAAGTATTTTG
1 GAATTTGAGGTTGAGAATGTAATTGAAGTATTTTG
* *
50240 GAATTTGAGGTTTAGAATGTAATTGTAGTATTTT-
1 GAATTTGAGGTTGAGAATGTAATTGAAGTATTTTG
*
50274 GAACTTTTG-GGTTTAGAATGTAATTGA
1 GAA--TTTGAGGTTGAGAATGTAATTGA
50301 TGATTGTGTT
Statistics
Matches: 54, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
34 3 0.06
35 47 0.87
36 4 0.07
ACGTcount: A:0.28, C:0.02, G:0.27, T:0.43
Consensus pattern (35 bp):
GAATTTGAGGTTGAGAATGTAATTGAAGTATTTTG
Found at i:51708 original size:19 final size:19
Alignment explanation
Indices: 51670--51708 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
51660 TATGGAATGT
*
51670 AAGATTATCAGTGAAAATA
1 AAGATTATCAGGGAAAATA
*
51689 AAGATTATCAGGGAATATA
1 AAGATTATCAGGGAAAATA
51708 A
1 A
51709 TTACTGAGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.51, C:0.05, G:0.18, T:0.26
Consensus pattern (19 bp):
AAGATTATCAGGGAAAATA
Found at i:53695 original size:2 final size:2
Alignment explanation
Indices: 53688--53712 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
53678 AAATATACCG
53688 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
53713 ACTTAAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:53780 original size:33 final size:32
Alignment explanation
Indices: 53738--53801 Score: 101
Period size: 33 Copynumber: 2.0 Consensus size: 32
53728 GTTCGTTTGG
* *
53738 TTCTAGAAAATAGTTTTTATTTTTTATTTTTTA
1 TTCTAGAAAATAGTTTTCA-TTTTCATTTTTTA
53771 TTCTAGAAAATAGTTTTCATTTTCATTTTTT
1 TTCTAGAAAATAGTTTTCATTTTCATTTTTT
53802 TTTGAAATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 11 0.38
33 18 0.62
ACGTcount: A:0.27, C:0.06, G:0.06, T:0.61
Consensus pattern (32 bp):
TTCTAGAAAATAGTTTTCATTTTCATTTTTTA
Found at i:54290 original size:20 final size:20
Alignment explanation
Indices: 54267--54306 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
54257 CCTTCACGAC
*
54267 ACTTACATGACAGTTTACAA
1 ACTTACATGACAATTTACAA
54287 ACTTACATGACAATTTACAA
1 ACTTACATGACAATTTACAA
54307 TATTGGTGTG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.42, C:0.20, G:0.07, T:0.30
Consensus pattern (20 bp):
ACTTACATGACAATTTACAA
Found at i:54456 original size:14 final size:14
Alignment explanation
Indices: 54437--54467 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
54427 AAAATTATTT
54437 AAATTAAAAATATA
1 AAATTAAAAATATA
54451 AAATTAAAAATATA
1 AAATTAAAAATATA
54465 AAA
1 AAA
54468 AATTATTAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (14 bp):
AAATTAAAAATATA
Found at i:55119 original size:24 final size:24
Alignment explanation
Indices: 55070--55119 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 24
55060 ATTTAACTTG
* * * *
55070 TTTAGCATTTATAAACATGTTTTT
1 TTTAACATTCATAAACATATTCTT
55094 TTTAACATTCATAAACATATTCTT
1 TTTAACATTCATAAACATATTCTT
55118 TT
1 TT
55120 GACGTTCACT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.32, C:0.12, G:0.04, T:0.52
Consensus pattern (24 bp):
TTTAACATTCATAAACATATTCTT
Found at i:61912 original size:11 final size:11
Alignment explanation
Indices: 61867--61904 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
61857 CCGAAAAAAC
*
61867 ATATATTTA-T
1 ATATATATATT
61877 ATATTATATATT
1 ATA-TATATATT
61889 ATATATATATT
1 ATATATATATT
61900 ATATA
1 ATATA
61905 AGTATTATTA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
10 3 0.12
11 18 0.72
12 4 0.16
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (11 bp):
ATATATATATT
Found at i:66572 original size:84 final size:84
Alignment explanation
Indices: 66378--66669 Score: 333
Period size: 84 Copynumber: 3.5 Consensus size: 84
66368 TTTAAAACAA
** * * *** *
66378 ATCATTTGCAGTATAGCTTAAGTCGAGAAGGGCTATCTG-C--C-AAAGACCCCCGAGTTCGATT
1 ATCATTTGCAACATAACTTAAGTCGAGAAGGGTTATCTGCCAACAAAAGACCTTTGAGTTCGACT
* * *
66439 ACACTCAGCTTCGAGGGCAC
66 ACGCTCAGC-TCAACGGCAC
* *
66459 ATCATTTGCATCATAACTTAAGTCGAGAAGGGTTATCTGCCAACCAAAGACCTTTGAGTTCGACT
1 ATCATTTGCAACATAACTTAAGTCGAGAAGGGTTATCTGCCAACAAAAGACCTTTGAGTTCGACT
*
66524 ACGCTCAGCTCCAA-GGCAT
66 ACGCTCAGCT-CAACGGCAC
* * * * *
66543 GTCATTTGCAACACAACTTAAGTCTAGAAGGGTTGTCTGCCAACAAAATACCTTTGAGTTCGACT
1 ATCATTTGCAACATAACTTAAGTCGAGAAGGGTTATCTGCCAACAAAAGACCTTTGAGTTCGACT
66608 ACGCTCAGCTCAACGGCAC
66 ACGCTCAGCTCAACGGCAC
* * *
66627 ATCATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCCAA
1 ATCATTTGCAACATAACTTAAGTCGAGAAGGGTTATCTGCCAA
66670 AGATCCCGAG
Statistics
Matches: 179, Mismatches: 26, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
81 35 0.20
82 1 0.01
83 3 0.02
84 114 0.64
85 26 0.15
ACGTcount: A:0.29, C:0.25, G:0.21, T:0.25
Consensus pattern (84 bp):
ATCATTTGCAACATAACTTAAGTCGAGAAGGGTTATCTGCCAACAAAAGACCTTTGAGTTCGACT
ACGCTCAGCTCAACGGCAC
Found at i:66809 original size:15 final size:15
Alignment explanation
Indices: 66789--66845 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
66779 AAATTTCGTC
66789 TCCCTTGAGACAGTT
1 TCCCTTGAGACAGTT
* *
66804 TCCCTTGAAACAAATTGTC
1 TCCCTTGAGAC--A--GTT
66823 TCCCTTGAGACAGTT
1 TCCCTTGAGACAGTT
*
66838 TCTCTTGA
1 TCCCTTGA
66846 AATATAAACA
Statistics
Matches: 33, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
15 19 0.58
17 2 0.06
19 12 0.36
ACGTcount: A:0.23, C:0.26, G:0.16, T:0.35
Consensus pattern (15 bp):
TCCCTTGAGACAGTT
Found at i:66912 original size:36 final size:35
Alignment explanation
Indices: 66865--66949 Score: 107
Period size: 35 Copynumber: 2.4 Consensus size: 35
66855 ATCGAAAACA
* ** * *
66865 TTTCCCTTGAAATGAATTTTGTCTCTCTTGAGATAG
1 TTTCCCTTGAAA-CAAAATTGTCTCCCTTGAGACAG
66901 TTTCCCTTGAAACAAAATTGTCTCCCTTGAGACAG
1 TTTCCCTTGAAACAAAATTGTCTCCCTTGAGACAG
*
66936 TTTCTCTTGAAACA
1 TTTCCCTTGAAACA
66950 TAACATTGAA
Statistics
Matches: 43, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
35 31 0.72
36 12 0.28
ACGTcount: A:0.26, C:0.21, G:0.14, T:0.39
Consensus pattern (35 bp):
TTTCCCTTGAAACAAAATTGTCTCCCTTGAGACAG
Found at i:66955 original size:99 final size:100
Alignment explanation
Indices: 66780--67038 Score: 418
Period size: 99 Copynumber: 2.6 Consensus size: 100
66770 TCTTAAAACA
* * *
66780 AATTTCGTCTCCCTTGAGACAGTTTCCCTTGAAAC-AAATTGTCTCCCTTGAGACAGTTTCTCTT
1 AATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATTGTCTCCCTTGAGACAGTTTCTCTT
*
66844 GAAATATAAACATCGAAAACATTTCCCTTGAAATG
66 GAAACATAAACATCGAAAACATTTCCCTTGAAATG
66879 AATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATTGTCTCCCTTGAGACAGTTTCTCTT
1 AATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATTGTCTCCCTTGAGACAGTTTCTCTT
*
66944 GAAACAT-AACATTGAAAACATTTCCCTTGAAATG
66 GAAACATAAACATCGAAAACATTTCCCTTGAAATG
* *
66978 AATTTTGTCTCTCTT--GATAGTTTCCCTTGAAACAAAGTTCGTCTCCCTTGAGACAATTTCT
1 AATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATT-GTCTCCCTTGAGACAGTTTCT
67039 TTTTGAACTA
Statistics
Matches: 151, Mismatches: 7, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
97 23 0.15
98 20 0.13
99 73 0.48
100 35 0.23
ACGTcount: A:0.29, C:0.22, G:0.13, T:0.36
Consensus pattern (100 bp):
AATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATTGTCTCCCTTGAGACAGTTTCTCTT
GAAACATAAACATCGAAAACATTTCCCTTGAAATG
Found at i:67022 original size:34 final size:34
Alignment explanation
Indices: 66964--67028 Score: 85
Period size: 34 Copynumber: 1.9 Consensus size: 34
66954 ATTGAAAACA
** * * *
66964 TTTCCCTTGAAATGAATTTTGTCTCTCTTGATAG
1 TTTCCCTTGAAACAAAGTTCGTCTCCCTTGATAG
66998 TTTCCCTTGAAACAAAGTTCGTCTCCCTTGA
1 TTTCCCTTGAAACAAAGTTCGTCTCCCTTGA
67029 GACAATTTCT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
34 26 1.00
ACGTcount: A:0.22, C:0.23, G:0.14, T:0.42
Consensus pattern (34 bp):
TTTCCCTTGAAACAAAGTTCGTCTCCCTTGATAG
Found at i:67295 original size:106 final size:106
Alignment explanation
Indices: 67099--67958 Score: 1272
Period size: 106 Copynumber: 8.4 Consensus size: 106
67089 AATTTGCTCG
* * *
67099 AGAGTCAATTTC-ACTTCACAACGAA-GATATTGGACTCCAGACGACGCATGTTCAACTTCACGA
1 AGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGA
*
67162 CGAAGGGACCGCTGGTCGTCAACAAACAACTTCTCAATTTC
66 CGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTTC
* *
67203 AGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACGACGCATGTTCAACTTCACGA
1 AGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGA
*
67268 CGAAGGGACCGCTGGTCGTCAACAAACAACTTCTCAATTTC
66 CGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTTC
* *
67309 AGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCATGTTCAACTTCACGA
1 AGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGA
*
67374 CGAA-GGACCGCTGGTTGTCAACAAACAACTTCTCAATTTT
66 CGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTTC
67414 AGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGA
1 AGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGA
*
67479 CGAAGGGACCGCTGGTTGTCAATAAACAACTTCTCAATTTC
66 CGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTTC
*
67520 AGAGCCAATTTCAACTTCACAATGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGA
1 AGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGA
*
67585 CGAAGGGACCGCTGGTTGTCAATAAACAACTTCTCAATTTC
66 CGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTTC
* *
67626 AGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACTCAAGTTCAACTTCACGA
1 AGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGA
*
67691 CGAAGGGACCGCTGGTTGT---CAAACAA----ACAATTTC
66 CGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTTC
*
67725 ----CCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGA
1 AGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGA
67786 CGAAGGGACCGCTGGTTGTCAAC--A-AA-----CAATTTC
66 CGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTTC
* * *
67819 ----CCAATTTCAATTTCACAACGAAGGACATTGGACTCCAGACAACGCAAGTTCAACTTCACAA
1 AGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGA
* * * *
67880 CGAAGGGACCGCTGGTTGTCAATAAACAA-TTTTCCAGTTC
66 CGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTTC
**
67920 TAGAGCCAATTTCAACTTCACGGCGGAA-GATATTGGACT
1 -AGAGCCAATTTCAACTTCACAAC-GAAGGATATTGGACT
67959 TGGAACAATT
Statistics
Matches: 710, Mismatches: 27, Indels: 36
0.92 0.03 0.05
Matches are distributed among these distances:
94 86 0.12
95 81 0.11
96 2 0.00
97 2 0.00
98 1 0.00
99 7 0.01
101 5 0.01
103 6 0.01
104 11 0.02
105 114 0.16
106 392 0.55
107 3 0.00
ACGTcount: A:0.33, C:0.26, G:0.18, T:0.23
Consensus pattern (106 bp):
AGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGA
CGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTTC
Found at i:67475 original size:211 final size:211
Alignment explanation
Indices: 67099--67958 Score: 1277
Period size: 211 Copynumber: 4.2 Consensus size: 211
67089 AATTTGCTCG
* * * *
67099 AGAGTCAATTTC-ACTTCACAACGAA-GATATTGGACTCCAGACGACGCATGTTCAACTTCACGA
1 AGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGA
*
67162 CGAAGGGACCGCTGGTCGTCAACAAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACG
66 CGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACG
* * *
67227 AAGGATATTGGACTCCAGACGACGCATGTTCAACTTCACGACGAAGGGACCGCTGGTCGTCAACA
131 AAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACA
67292 AACAACTTCTCAATTTC
196 AACAA-TTCTCAATTTC
*
67309 AGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCATGTTCAACTTCACGA
1 AGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGA
*
67374 CGAA-GGACCGCTGGTTGTCAACAAACAACTTCTCAATTTTAGAGCCAATTTCAACTTCACAACG
66 CGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACG
*
67438 AAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATA
131 AAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACA
67503 AACAACTTCTCAATTTC
196 AACAA-TTCTCAATTTC
**
67520 AGAGCCAATTTCAACTTCACAATGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGA
1 AGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGA
* *
67585 CGAAGGGACCGCTGGTTGTCAATAAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAGCG
66 CGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACG
*
67650 AAGGATATTGGACTCCAGACAACTCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGT---CA
131 AAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACA
*
67712 AACAA---ACAATTTC
196 AACAATTCTCAATTTC
67725 ----CCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGA
1 AGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGA
*
67786 CGAAGGGACCGCTGGTTGTCAAC--A-AA-----CAATTTC----CCAATTTCAATTTCACAACG
66 CGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACG
* * *
67839 AAGGACATTGGACTCCAGACAACGCAAGTTCAACTTCACAACGAAGGGACCGCTGGTTGTCAATA
131 AAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACA
* * *
67904 AACAATTTTCCAGTTC
196 AACAATTCTCAATTTC
*
67920 TAGAGCCAATTTCAACTTCACGGCGGAA-GATATTGGACT
1 -AGAGCCAATTTCAACTTCACAGC-GAAGGATATTGGACT
67959 TGGAACAATT
Statistics
Matches: 604, Mismatches: 31, Indels: 40
0.89 0.05 0.06
Matches are distributed among these distances:
189 75 0.12
192 6 0.01
193 7 0.01
195 5 0.01
198 2 0.00
199 1 0.00
200 29 0.05
201 84 0.14
205 7 0.01
209 6 0.01
210 11 0.02
211 214 0.35
212 157 0.26
ACGTcount: A:0.33, C:0.26, G:0.18, T:0.23
Consensus pattern (211 bp):
AGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGA
CGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACG
AAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACA
AACAATTCTCAATTTC
Found at i:67696 original size:43 final size:43
Alignment explanation
Indices: 67630--67885 Score: 129
Period size: 43 Copynumber: 5.6 Consensus size: 43
67620 AATTTCAGAG
*
67630 CCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAAC
1 CCAAGTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAAC
* *** ** *
67673 TCAAGTTCAACTTCAC-GACGAAGGGACCGCTGGTTGTCAAACAAACAATTTC
1 CCAAGTTCAACTTCACAG-CGAA-GGA-TATTGG-ACTC---CAGACAA---C
*
67725 CCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAAC
1 CCAAGTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAAC
* *** ** *
67768 GCAAGTTCAACTTCAC-GACGAAGGGACCGCTGGTTGTCAACAAACAATTTC
1 CCAAGTTCAACTTCACAG-CGAA-GGA-TATTGG-ACTC--CAGACAA---C
* * * *
67819 CCAATTTCAATTTCACAACGAAGGACATTGGACTCCAGACAAC
1 CCAAGTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAAC
* *
67862 GCAAGTTCAACTTCACAACGAAGG
1 CCAAGTTCAACTTCACAGCGAAGG
67886 GACCGCTGGT
Statistics
Matches: 156, Mismatches: 36, Indels: 42
0.67 0.15 0.18
Matches are distributed among these distances:
42 2 0.01
43 59 0.38
44 6 0.04
45 6 0.04
46 16 0.10
48 8 0.05
49 12 0.08
50 6 0.04
51 21 0.13
52 19 0.12
53 1 0.01
ACGTcount: A:0.34, C:0.27, G:0.18, T:0.21
Consensus pattern (43 bp):
CCAAGTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAAC
Found at i:70818 original size:2 final size:2
Alignment explanation
Indices: 70813--70845 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
70803 TATTAATTTT
70813 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
70846 TAGATTTTTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:71189 original size:34 final size:34
Alignment explanation
Indices: 71126--71190 Score: 80
Period size: 34 Copynumber: 1.9 Consensus size: 34
71116 ACTAAAAATA
* *
71126 AAAAAATAATTATTAAATTAAATATATTGAACAT
1 AAAAAATAATTAATAAATTAAATAAATTGAACAT
71160 AAAAAATAA-TAATAAA-TAAATTACAATTGAA
1 AAAAAATAATTAATAAATTAAA-TA-AATTGAA
71191 TAATAATCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
32 4 0.15
33 8 0.30
34 15 0.56
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.31
Consensus pattern (34 bp):
AAAAAATAATTAATAAATTAAATAAATTGAACAT
Found at i:73125 original size:119 final size:120
Alignment explanation
Indices: 72915--73215 Score: 395
Period size: 119 Copynumber: 2.5 Consensus size: 120
72905 AGATAAGTTA
* *
72915 TTCTCATTATGAACTTCTTCTT-CTCTT-AGATGGGTTCTTCTCATTATGAACTCCTTT-TGGAA
1 TTCTCATTATGAACTTTTTCTTCCTCTTCAGATGAGTTCTTCTCATTATGAACT-CTTTCTGG--
* *
72977 ATATTGGTGTCGATCTATCTCTTTCTATGATAAAATCGAGCAAAAGGTTGAATAA-ATC
63 A-ATTGGTGTCGATCTATCTCCTTCTATGATAAAATCGAGCAAAAGGTTGAACAAGATC
73035 TTCTCATTAT-AAGCTTTTTCTTCCTCTTCAGATGAGTTCTTCTCATTATGAACTCTTTCTGTG-
1 TTCTCATTATGAA-CTTTTTCTTCCTCTTCAGATGAGTTCTTCTCATTATGAACTCTTTCTG-GA
* * *
73098 ATTGGTG-CTGATCTATCTCCTTGTATGATAGAATCGAGCAAAAGGTTGAACAAGTTC
64 ATTGGTGTC-GATCTATCTCCTTCTATGATAAAATCGAGCAAAAGGTTGAACAAGATC
*
73155 TTCT-ATTATGAA-TTTCTTCTTCCTTTTCAGATGAGTTCTTCTCATTATGAACTCTTTCTGG
1 TTCTCATTATGAACTTT-TTCTTCCTCTTCAGATGAGTTCTTCTCATTATGAACTCTTTCTGG
73216 CAATGTTGAA
Statistics
Matches: 164, Mismatches: 8, Indels: 20
0.85 0.04 0.10
Matches are distributed among these distances:
118 5 0.03
119 97 0.59
120 26 0.16
121 9 0.05
122 26 0.16
123 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.15, T:0.43
Consensus pattern (120 bp):
TTCTCATTATGAACTTTTTCTTCCTCTTCAGATGAGTTCTTCTCATTATGAACTCTTTCTGGAAT
TGGTGTCGATCTATCTCCTTCTATGATAAAATCGAGCAAAAGGTTGAACAAGATC
Found at i:73610 original size:253 final size:254
Alignment explanation
Indices: 73155--73627 Score: 819
Period size: 253 Copynumber: 1.9 Consensus size: 254
73145 GAACAAGTTC
* *
73155 TTCTATTATGAATTTCTTCTTCCTTTTCAGATGAGTTCTTCTCATTATGAACTCTTTCTGGCAAT
1 TTCTATTATGAACTTCTTCTTCCTTTTCAGATGAGTTCTTCTAATTATGAACTCTTTCTGGCAAT
*
73220 GTTGAATCATCAAGTAATAGATTCAAATCTTTGCTAATCTTTGGGGTTCTTGTTAAATAATCACA
66 GTTGAATCATCAAGTAATAGATTCAAATCTTTGCTAATCTTTGAGGTTCTTGTTAAATAATCACA
73285 TTGATAAAATGAATGAAAATGCCCCTATTTTTGTAAATGTCTAAATATGATGCATGAATGTTAAG
131 TTGATAAAATGAATGAAAATGCCCCTATTTTTGTAAATGTCTAAATATGATGCATGAATGTTAAG
73350 TTCATATTTATTTGACTTCAATATGGACAAACCTATCTTCCTTTACTTAGTCAAAATCAT
196 TTCATATTTA-TTGACTTCAATATGGACAAACCTATCTTCCTTTACTTAGTCAAAATCAT
73410 TTCTCATTATGAACTTCTTCTTCCTTTTCAGATGAGTTCTTCTAATT-TGAACTCTTT-TGGCAA
1 TTCT-ATTATGAACTTCTTCTTCCTTTTCAGATGAGTTCTTCTAATTATGAACTCTTTCTGGCAA
* * *
73473 -GTTGAATCATCAAGTGATAGATTCAAATCTTTTCTAATCTTTTAGGTTCTTGTTAAATAATCAA
65 TGTTGAATCATCAAGTAATAGATTCAAATCTTTGCTAATCTTTGAGGTTCTTGTTAAATAATC-A
* *
73537 CATTGATAAAATGAATGGAAATG-CCCTATTTTTTTAAATGTCTAAATATGATGCATGAATGTTA
129 CATTGATAAAATGAATGAAAATGCCCCTATTTTTGTAAATGTCTAAATATGATGCATGAATGTTA
73601 AGTTCATATTTATTGACTTCAATATGG
194 AGTTCATATTTATTGACTTCAATATGG
Statistics
Matches: 208, Mismatches: 8, Indels: 7
0.93 0.04 0.03
Matches are distributed among these distances:
252 15 0.07
253 110 0.53
254 29 0.14
255 14 0.07
256 40 0.19
ACGTcount: A:0.30, C:0.15, G:0.13, T:0.42
Consensus pattern (254 bp):
TTCTATTATGAACTTCTTCTTCCTTTTCAGATGAGTTCTTCTAATTATGAACTCTTTCTGGCAAT
GTTGAATCATCAAGTAATAGATTCAAATCTTTGCTAATCTTTGAGGTTCTTGTTAAATAATCACA
TTGATAAAATGAATGAAAATGCCCCTATTTTTGTAAATGTCTAAATATGATGCATGAATGTTAAG
TTCATATTTATTGACTTCAATATGGACAAACCTATCTTCCTTTACTTAGTCAAAATCAT
Done.