genome.fa.s5895.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005895.1 Hibiscus syriacus cultivar Beakdansim tig00013838_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  128328

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16683--16731	3	16.3	3	89	0	53	59	2	36	2	1.21
17475--17509	17	2.1	17	94	0	61	65	8	20	5	1.40
17665--17711	23	2.0	23	100	0	94	36	21	12	29	1.91
27937--27979	19	2.3	19	87	0	59	18	25	20	34	1.96
28474--28714	124	1.9	118	87	11	340	57	8	13	19	1.62
28474--28728	131	2.0	124	93	5	438	57	8	14	19	1.63
32761--33147	183	2.1	184	92	2	647	45	8	3	42	1.52
33274--33302	15	1.9	15	100	0	58	17	6	27	48	1.72
34063--34156	49	1.9	49	95	0	170	43	9	8	38	1.68
54853--54944	34	2.7	34	98	0	175	27	33	21	17	1.96
55959--56513	43	12.7	44	73	15	255	47	7	20	25	1.75
56511--56536	13	2.0	13	100	0	52	76	0	7	15	0.99
62956--63256	41	7.3	41	75	5	223	28	20	17	33	1.95
62956--63248	83	3.5	83	77	5	263	29	20	17	33	1.95
63003--63240	84	2.9	83	78	6	223	28	21	16	33	1.95
63011--63273	125	2.1	126	83	4	336	27	22	18	32	1.97
63322--63362	21	2.0	21	95	0	73	29	41	4	24	1.75
66410--66675	43	6.2	43	85	3	358	23	23	20	32	1.98
66410--66675	128	2.1	129	88	2	392	23	23	20	32	1.98
66882--66908	14	1.9	14	100	0	54	25	22	14	37	1.93
73806--73840	2	17.5	2	100	0	70	51	0	0	48	1.00
76884--76955	21	3.0	24	86	11	87	51	0	5	43	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76897--76970	23	3.1	23	76	21	73	50	0	5	44	1.25
77707--77779	31	2.3	32	88	2	103	49	15	9	26	1.74
84402--84448	20	2.3	20	92	0	76	34	23	19	23	1.97
84439--84487	20	2.5	20	93	0	89	44	22	14	18	1.85
84507--84644	21	6.7	21	76	7	122	23	16	29	30	1.96
84507--84606	42	2.4	41	89	1	146	23	17	30	30	1.96
84572--84609	20	1.9	20	88	0	58	28	18	23	28	1.98
84507--84619	21	5.5	21	82	3	131	23	16	30	30	1.96
93271--93297	2	13.5	2	100	0	54	51	0	0	48	1.00
101671--101696	5	5.2	5	100	0	52	0	19	57	23	1.40
103342--103410	23	3.0	23	78	4	68	10	5	23	60	1.50
106876--106915	2	20.0	2	100	0	80	50	0	0	50	1.00
118934--119035	43	2.4	43	94	0	177	52	8	20	17	1.71
119264--119376	42	2.7	42	94	0	190	46	18	16	18	1.85
119998--120028	13	2.3	14	94	5	55	64	0	0	35	0.94
120410--120450	2	21.0	2	95	5	75	48	0	0	51	1.00
120413--120451	19	2.1	19	100	0	78	46	0	0	53	1.00
120509--120567	26	2.2	26	81	6	64	20	0	18	61	1.35
122586--122704	42	2.8	44	83	12	165	48	10	21	19	1.79
122586--122712	41	3.0	41	88	7	175	48	11	22	18	1.79
125011--125126	58	2.0	58	96	0	214	33	14	18	33	1.91

Tables:   1

The End!