genome.fa.s5896.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005896.1 Hibiscus syriacus cultivar Beakdansim tig00013847_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65753

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5837--5937	9	10.2	10	71	13	59	51	0	1	45	1.19
5837--5937	20	5.1	19	70	16	71	51	0	1	45	1.19
5837--5936	42	2.5	39	82	11	114	52	1	2	45	1.19
5931--5996	27	2.4	27	80	14	73	50	0	1	48	1.10
5944--6020	27	2.9	27	73	11	68	53	1	1	44	1.17
9055--9100	24	1.9	24	90	0	74	39	2	2	56	1.24
12151--12180	16	1.9	15	93	6	51	43	10	26	20	1.83
12283--12330	18	2.7	18	77	9	53	43	0	2	54	1.12
12306--12390	36	2.3	37	79	18	106	50	2	0	47	1.14
12303--12386	35	2.6	31	73	26	84	47	2	0	50	1.14
14019--14047	14	2.1	14	100	0	58	34	13	13	37	1.85
13918--14092	89	2.0	89	97	0	332	36	8	13	42	1.73
17145--17191	14	3.3	14	76	23	53	27	0	23	48	1.51
22950--23014	2	32.5	2	96	0	121	50	1	0	47	1.10
24129--24165	20	1.9	19	89	10	58	45	10	24	18	1.81
26496--26547	23	2.3	23	86	0	68	40	7	17	34	1.78
26511--26568	23	2.6	23	81	13	59	43	10	13	32	1.78
53765--53816	16	3.2	16	69	0	50	51	9	5	32	1.58
57325--57965	81	7.9	81	93	0	1032	29	15	28	26	1.96
57287--57965	243	2.8	243	94	1	1159	28	15	28	27	1.96
61428--62847	78	18.3	78	76	6	947	28	16	22	32	1.96
61482--62847	233	5.9	231	75	7	922	28	16	22	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63007--63049	16	2.7	16	100	0	86	37	11	18	32	1.87
63130--63190	23	2.7	22	75	5	68	32	22	11	32	1.90
65385--65722	77	4.4	77	77	5	283	27	16	25	30	1.96

Tables:   1

The End!