genome.fa.s5899.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005899.1 Hibiscus syriacus cultivar Beakdansim tig00013857_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72961

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3240--3657	75	5.8	73	80	7	435	32	15	13	38	1.86
3275--3657	73	5.3	73	80	8	390	32	15	12	39	1.85
3274--3641	142	2.5	147	79	6	419	32	15	12	39	1.85
9341--9419	41	1.9	41	92	0	131	34	6	26	32	1.82
9345--9430	19	4.3	20	81	11	104	38	5	25	30	1.79
9406--9580	94	1.9	93	98	1	341	41	12	16	29	1.85
9843--9963	21	6.0	21	78	13	112	33	20	24	21	1.97
9843--9914	37	1.9	37	91	0	117	34	13	26	25	1.93
10014--10062	20	2.5	20	96	0	89	24	20	30	24	1.98
10077--10122	19	2.4	19	85	3	56	21	17	30	30	1.96
10088--10124	19	1.9	19	94	0	65	21	16	29	32	1.95
12241--12297	25	2.3	25	100	0	114	40	14	14	31	1.85
16846--16876	4	8.0	4	92	7	55	77	22	0	0	0.77
18812--18878	33	2.0	34	91	2	109	34	23	7	34	1.83
19600--19624	2	12.5	2	100	0	50	52	0	0	48	1.00
20180--20252	37	2.1	36	87	10	107	34	20	13	31	1.92
20626--20670	17	2.6	17	96	0	81	60	0	8	31	1.28
25163--25251	20	4.4	20	85	4	117	32	21	19	26	1.97
26073--26126	24	2.2	24	93	0	90	24	18	16	40	1.90
26301--26327	6	4.5	6	100	0	54	81	0	18	0	0.69
26325--26357	14	2.5	13	86	13	50	48	24	21	6	1.72
26332--26358	14	1.9	14	100	0	54	44	29	18	7	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28391--28427	18	2.1	18	89	0	56	56	21	2	18	1.54
28487--28756	140	1.9	140	96	0	504	28	12	15	42	1.84
28727--28897	20	8.9	20	80	7	192	30	20	20	28	1.98
28755--28935	74	2.4	74	84	3	222	33	20	19	25	1.97
28732--28913	94	1.9	94	85	1	249	33	20	19	25	1.97
31142--31187	20	2.4	19	89	7	67	39	28	17	15	1.90
31231--31298	20	3.4	20	89	0	100	20	20	23	35	1.96
31446--31495	18	2.8	18	93	0	91	42	4	20	34	1.70
33226--33301	20	3.8	20	80	3	100	51	19	15	13	1.76
33935--34051	20	5.8	20	88	0	144	24	21	23	29	1.99
33914--34051	40	3.4	41	82	4	147	25	22	22	29	1.99
36551--36583	14	2.4	14	94	0	57	33	6	30	30	1.82
37969--38010	20	2.0	22	86	9	61	28	7	26	38	1.82
38405--38445	22	1.9	22	85	5	57	41	4	17	36	1.71
50409--50452	20	2.1	22	87	8	65	36	29	0	34	1.58
50441--50511	2	37.0	2	88	8	112	47	1	0	50	1.09
50808--50888	17	5.1	17	67	27	61	23	6	22	48	1.73
50821--50873	14	3.6	14	72	22	54	26	5	22	45	1.74
50808--50888	31	2.6	31	98	0	153	23	6	22	48	1.73
51892--51937	21	2.1	22	84	4	58	58	0	10	30	1.32
52117--52191	21	3.4	22	74	15	66	58	8	5	28	1.48
52087--52207	45	2.8	45	81	6	133	57	6	9	26	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52046--52335	43	6.7	43	72	10	182	55	5	12	26	1.58
52046--52288	42	5.7	43	72	10	174	55	5	13	26	1.59
52029--52365	43	7.8	42	73	10	152	56	5	11	26	1.58
54185--54215	15	2.1	15	93	0	53	54	0	0	45	0.99
58029--58122	23	4.0	25	73	14	85	31	24	24	19	1.98
61340--61366	2	13.5	2	100	0	54	48	0	0	51	1.00
62107--62357	125	2.0	125	96	0	457	33	16	16	33	1.91
63690--63845	45	3.6	43	73	12	131	52	9	10	26	1.67
63690--63826	45	3.1	43	77	9	134	54	9	10	25	1.65
63940--64010	29	2.4	29	83	6	81	53	8	18	19	1.69
63697--63980	43	6.6	43	73	13	160	53	7	11	27	1.63
63960--64016	29	1.9	30	89	3	89	47	10	22	19	1.80
66617--66664	22	2.2	22	81	7	53	37	8	4	50	1.52
72127--72188	3	20.3	3	80	9	72	61	0	0	38	0.96
72346--72948	76	8.4	75	86	10	877	35	20	21	22	1.96
72617--72961	65	5.1	65	80	16	423	35	20	21	22	1.96
72754--72961	62	3.1	63	80	18	260	36	20	21	21	1.95
72390--72961	141	4.1	140	92	5	919	36	20	21	22	1.96

Tables:   1

The End!