Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000059.1 Hibiscus syriacus cultivar Beakdansim tig00000091_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71994

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10149--10177
11
2.6
11
100
0
58
27
31
10
31
1.90
14590--15165
134
4.3
134
78
8
508
30
21
16
30
1.96
15150--16477
134
9.9
134
84
2
1510
30
21
17
29
1.96
15150--16474
401
3.3
397
85
3
1633
30
21
17
29
1.96
19273--19327
3
19.0
3
92
7
96
65
0
0
34
0.93
19542--19716
89
2.0
89
88
2
262
27
19
18
34
1.95
19695--19814
50
2.4
50
95
0
213
28
26
14
30
1.95
32531--32592
13
5.2
12
79
15
67
58
0
1
40
1.08
32536--32593
3
18.7
3
83
13
73
60
0
0
39
0.97
32536--32598
16
3.9
15
85
12
72
58
0
0
41
0.98
32543--32599
13
4.2
13
93
4
87
59
0
0
40
0.97
33960--34327
131
2.8
130
86
2
470
33
11
14
41
1.81
40216--40293
33
2.4
33
80
8
97
52
7
17
21
1.70
48725--48759
18
1.9
18
94
0
61
17
22
34
25
1.96
49574--49618
22
2.1
22
95
4
83
22
24
28
24
1.99
49648--49682
12
2.9
12
91
0
52
20
14
22
42
1.88
55818--55851
17
2.0
17
94
0
59
17
2
0
79
0.86
56708--56739
16
1.9
17
93
6
57
34
0
0
65
0.93
57958--58002
18
2.6
17
93
6
74
33
6
31
28
1.83
58566--58654
38
2.4
37
84
7
126
38
38
10
13
1.78
61076--61395
169
1.9
169
84
3
430
21
35
17
25
1.95
61477--61517
22
2.0
22
90
9
68
34
0
17
48
1.47
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61518--61549
12
2.7
12
95
0
55
50
0
0
50
1.00
61519--61560
12
3.1
14
80
16
52
52
0
0
47
1.00
63202--63247
24
1.9
24
81
0
56
39
2
10
47
1.51
64647--64676
3
10.0
3
92
0
51
3
33
0
63
1.11

Tables:   1

The End!