Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01005900.1 Hibiscus syriacus cultivar Beakdansim tig00013862_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64837
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.31
Found at i:4446 original size:21 final size:20
Alignment explanation
Indices: 4416--4455 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
4406 CCTTTCTCAA
4416 AGAAGATTTGGGAGGATTTAT
1 AGAAGATTT-GGAGGATTTAT
* *
4437 AGAAGCTTTGTAGGATTTA
1 AGAAGATTTGGAGGATTTA
4456 GAGGGTTGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.33, C:0.03, G:0.30, T:0.35
Consensus pattern (20 bp):
AGAAGATTTGGAGGATTTAT
Found at i:5147 original size:9 final size:9
Alignment explanation
Indices: 5133--5168 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
5123 CTTTTAAAAT
5133 ATATTTAAA
1 ATATTTAAA
5142 ATATTTAAA
1 ATATTTAAA
*
5151 AT-TTAAAA
1 ATATTTAAA
5159 ATATTTAAA
1 ATATTTAAA
5168 A
1 A
5169 AACATATACA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
8 7 0.29
9 17 0.71
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (9 bp):
ATATTTAAA
Found at i:5156 original size:16 final size:17
Alignment explanation
Indices: 5135--5168 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
5125 TTTAAAATAT
5135 ATTT-AAAATATTTAAA
1 ATTTAAAAATATTTAAA
5151 ATTTAAAAATATTTAAA
1 ATTTAAAAATATTTAAA
5168 A
1 A
5169 AACATATACA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.24
17 13 0.76
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
ATTTAAAAATATTTAAA
Found at i:17710 original size:24 final size:22
Alignment explanation
Indices: 17668--17716 Score: 62
Period size: 24 Copynumber: 2.1 Consensus size: 22
17658 TTTAAATAAT
*
17668 ATTTGAAAAATTGAAAAATGTG
1 ATTTGAAAAATTGAAAAATATG
*
17690 ATTTGTAAAAATTAGACAAATATG
1 ATTTG-AAAAATT-GAAAAATATG
17714 ATT
1 ATT
17717 AGATTTAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 5 0.22
23 7 0.30
24 11 0.48
ACGTcount: A:0.49, C:0.02, G:0.14, T:0.35
Consensus pattern (22 bp):
ATTTGAAAAATTGAAAAATATG
Found at i:17827 original size:44 final size:44
Alignment explanation
Indices: 17779--18041 Score: 253
Period size: 44 Copynumber: 6.0 Consensus size: 44
17769 AATTTATGAA
* * *
17779 ATTGAAAATACTTAGAGACCTTAATTATAAAGGTAGAAATTGAG
1 ATTGAAAAAACTTAGGGACCTCAATTATAAAGGTAGAAATTGAG
* ** * *
17823 ATTGAAAAAA-ATAGGGGTCTCAATTATAAAGGTA-TAATTGGG
1 ATTGAAAAAACTTAGGGACCTCAATTATAAAGGTAGAAATTGAG
* * * * *
17865 ATTTAAAAAACATAGGGGCCTCAATTATAAAAGTAAAAATTGAG
1 ATTGAAAAAACTTAGGGACCTCAATTATAAAGGTAGAAATTGAG
* * *
17909 ATTGAAAAAACTTAGGGACCTTAATTATAAAGATAGAAAGTGAG
1 ATTGAAAAAACTTAGGGACCTCAATTATAAAGGTAGAAATTGAG
* * * * * *
17953 ATTAAAAAATATTTAAGGACCTCAATTATAAAGTTAAAAATGTGGG
1 ATTGAAAAA-ACTTAGGGACCTCAATTATAAAGGTAGAAAT-TGAG
* * * *
17999 ATT-AAAAAAATTAGGGGCTTCAATTATAAAGATAGAAATTGAG
1 ATTGAAAAAACTTAGGGACCTCAATTATAAAGGTAGAAATTGAG
18042 GTTTGTTGAC
Statistics
Matches: 179, Mismatches: 36, Indels: 9
0.80 0.16 0.04
Matches are distributed among these distances:
42 15 0.08
43 44 0.25
44 84 0.47
45 30 0.17
46 6 0.03
ACGTcount: A:0.47, C:0.06, G:0.19, T:0.28
Consensus pattern (44 bp):
ATTGAAAAAACTTAGGGACCTCAATTATAAAGGTAGAAATTGAG
Found at i:22821 original size:44 final size:44
Alignment explanation
Indices: 22743--22967 Score: 168
Period size: 41 Copynumber: 5.2 Consensus size: 44
22733 GAAAAGGTAG
* * *
22743 AAAATGAGATTGAAAAAAAATTAAGGGCCACAATTATAAAGTTAAAA
1 AAAATGAGATT---AAAAAATTAAGGACCTCAATTATAAAGGTAAAA
22790 AAAATGAGATTAAAAAATTAAGGACCTCAATTATAAAGGT--AA
1 AAAATGAGATTAAAAAATTAAGGACCTCAATTATAAAGGTAAAA
* * *
22832 AAAAT--GATTAAGAAAATT-AGATACTTCAATTATAAA-G-ATAA
1 AAAATGAGATTAA-AAAATTAAG-GACCTCAATTATAAAGGTAAAA
* * *
22873 AAAGTGAGATTGAATAAAATT-AGGACTTCACTTATAAAGGTAAAA
1 AAAATGAGATT-AA-AAAATTAAGGACCTCAATTATAAAGGTAAAA
* * * * *
22918 ATAA-GA-TTTAAAAAATTAA-GAGCCT-AAATATAAAGATGAAA
1 AAAATGAGATTAAAAAATTAAGGA-CCTCAATTATAAAGGTAAAA
22959 AAAATGAGA
1 AAAATGAGA
22968 CCCTAATTAC
Statistics
Matches: 145, Mismatches: 20, Indels: 30
0.74 0.10 0.15
Matches are distributed among these distances:
40 9 0.06
41 48 0.33
42 14 0.10
43 19 0.13
44 39 0.27
45 5 0.03
47 11 0.08
ACGTcount: A:0.56, C:0.06, G:0.14, T:0.24
Consensus pattern (44 bp):
AAAATGAGATTAAAAAATTAAGGACCTCAATTATAAAGGTAAAA
Found at i:22848 original size:41 final size:41
Alignment explanation
Indices: 22757--22937 Score: 163
Period size: 44 Copynumber: 4.3 Consensus size: 41
22747 TGAGATTGAA
* * *
22757 AAAAAATTAAGGGCCACAATTATAAAGTTAAAAAAAATGAGATT
1 AAAAAATTAAGGACCTCAATTATAAAGGT--AAAAAAT-AGATT
22801 AAAAAATTAAGGACCTCAATTATAAAGGTAAAAAAT-GATT
1 AAAAAATTAAGGACCTCAATTATAAAGGTAAAAAATAGATT
* * * *
22841 AAGAAAATT-AGATACTTCAATTATAAAGATAAAAAGTGAGATT
1 AA-AAAATTAAG-GACCTCAATTATAAAGGTAAAAAAT-AGATT
* *
22884 GAATAAAATT-AGGACTTCACTTATAAAGGT-AAAAATAAGATTT
1 -AA-AAAATTAAGGACCTCAATTATAAAGGTAAAAAAT-AGA-TT
22927 AAAAAATTAAG
1 AAAAAATTAAG
22938 AGCCTAAATA
Statistics
Matches: 117, Mismatches: 13, Indels: 16
0.80 0.09 0.11
Matches are distributed among these distances:
40 8 0.07
41 33 0.28
42 19 0.16
43 21 0.18
44 36 0.31
ACGTcount: A:0.55, C:0.06, G:0.13, T:0.26
Consensus pattern (41 bp):
AAAAAATTAAGGACCTCAATTATAAAGGTAAAAAATAGATT
Found at i:22863 original size:85 final size:85
Alignment explanation
Indices: 22773--22935 Score: 217
Period size: 85 Copynumber: 1.9 Consensus size: 85
22763 TTAAGGGCCA
22773 CAATTATAAAGTTAAAAAAAATGAGATT-AA-AAAATTAAGGACCTCAATTATAAAGGTAAAAA-
1 CAATTATAAAG--AAAAAAAATGAGATTGAATAAAATT-AGGACCTCAATTATAAAGGTAAAAAT
*
22835 ATGA-TTAAGAAAATTAGATACTT
63 AAGATTTAA-AAAATTAGATACTT
* * * *
22858 CAATTATAAAGATAAAAAGTGAGATTGAATAAAATTAGGACTTCACTTATAAAGGTAAAAATAAG
1 CAATTATAAAGAAAAAAAATGAGATTGAATAAAATTAGGACCTCAATTATAAAGGTAAAAATAAG
22923 ATTTAAAAAATTA
66 ATTTAAAAAATTA
22936 AGAGCCTAAA
Statistics
Matches: 69, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
83 13 0.19
84 25 0.36
85 27 0.39
86 4 0.06
ACGTcount: A:0.55, C:0.06, G:0.12, T:0.28
Consensus pattern (85 bp):
CAATTATAAAGAAAAAAAATGAGATTGAATAAAATTAGGACCTCAATTATAAAGGTAAAAATAAG
ATTTAAAAAATTAGATACTT
Found at i:22951 original size:84 final size:81
Alignment explanation
Indices: 22757--22967 Score: 203
Period size: 84 Copynumber: 2.5 Consensus size: 81
22747 TGAGATTGAA
* *
22757 AAAAAATTAAGGGCC-ACAATTATAAAGTTAAAAAAAATGAGATTAAAAAATTAAGGACCTCAAT
1 AAAAAATTAAGAGCCTA-AA-TATAAAG--ATAAAAAATGAGATTAAAAAATTAAGGACCTCAAT
*
22821 TATAAAGGTAAAAAATGATT
62 TATAAAGGTAAAAAAAGATT
* * * * * *
22841 AAGAAAATT-AGATACTTCAATTATAAAGATAAAAAGTGAGATTGAATAAAATT-AGGACTTCAC
1 AA-AAAATTAAGA-GCCT-AAATATAAAGATAAAAAATGAGATT-AA-AAAATTAAGGACCTCAA
22904 TTATAAAGGTAAAAATAAGATTT
61 TTATAAAGGTAAAAA-AAGA-TT
22927 AAAAAATTAAGAGCCTAAATATAAAGATGAAAAAAATGAGA
1 AAAAAATTAAGAGCCTAAATATAAAGAT--AAAAAATGAGA
22968 CCCTAATTAC
Statistics
Matches: 103, Mismatches: 13, Indels: 20
0.76 0.10 0.15
Matches are distributed among these distances:
83 13 0.13
84 40 0.39
85 31 0.30
86 18 0.17
87 1 0.01
ACGTcount: A:0.55, C:0.06, G:0.14, T:0.25
Consensus pattern (81 bp):
AAAAAATTAAGAGCCTAAATATAAAGATAAAAAATGAGATTAAAAAATTAAGGACCTCAATTATA
AAGGTAAAAAAAGATT
Found at i:22959 original size:29 final size:29
Alignment explanation
Indices: 22927--22992 Score: 80
Period size: 29 Copynumber: 2.3 Consensus size: 29
22917 AATAAGATTT
* *
22927 AAAAAATTAAGAGCCTAAATATAAAGATGA
1 AAAAAATTAAGACCCTAAATACAAAGAT-A
* *
22957 AAAAAA-TGAGACCCTAATTACAAAGATA
1 AAAAAATTAAGACCCTAAATACAAAGATA
22985 AAAAAATT
1 AAAAAATT
22993 GGAGGCCCGG
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
28 7 0.23
29 18 0.58
30 6 0.19
ACGTcount: A:0.61, C:0.09, G:0.11, T:0.20
Consensus pattern (29 bp):
AAAAAATTAAGACCCTAAATACAAAGATA
Found at i:29488 original size:28 final size:28
Alignment explanation
Indices: 29456--29514 Score: 93
Period size: 28 Copynumber: 2.1 Consensus size: 28
29446 ACATATTTAA
29456 AAGT-AATCAATAAAACAAATATAGTAGC
1 AAGTAAAT-AATAAAACAAATATAGTAGC
*
29484 AAGTAAATAATAAAACAAATATATTAGC
1 AAGTAAATAATAAAACAAATATAGTAGC
29512 AAG
1 AAG
29515 GAAAGATACA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
28 26 0.90
29 3 0.10
ACGTcount: A:0.59, C:0.08, G:0.10, T:0.22
Consensus pattern (28 bp):
AAGTAAATAATAAAACAAATATAGTAGC
Found at i:37305 original size:41 final size:41
Alignment explanation
Indices: 37259--37343 Score: 152
Period size: 41 Copynumber: 2.1 Consensus size: 41
37249 TAATTTGAGA
*
37259 AAATAAAAAATAGAGATAAAGAGGATACAAAATTTATGTGG
1 AAATAAAAAATAGAGATAAAGAGGACACAAAATTTATGTGG
*
37300 AAATAAAAAATAGAGATAAAGATGACACAAAATTTATGTGG
1 AAATAAAAAATAGAGATAAAGAGGACACAAAATTTATGTGG
37341 AAA
1 AAA
37344 ACCCCTACAT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.58, C:0.04, G:0.18, T:0.21
Consensus pattern (41 bp):
AAATAAAAAATAGAGATAAAGAGGACACAAAATTTATGTGG
Found at i:45661 original size:28 final size:28
Alignment explanation
Indices: 45605--45664 Score: 77
Period size: 28 Copynumber: 2.1 Consensus size: 28
45595 GTTTTTCATT
* *
45605 TTATAAAAAGTGAAACAAATTGCAGTAA
1 TTATAAAAAGTGAAACAAATCGCAATAA
*
45633 TTATAAAAAGTGCAACAAA-CGACAATAA
1 TTATAAAAAGTGAAACAAATCG-CAATAA
45661 TTAT
1 TTAT
45665 GTTATTATTT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
27 1 0.04
28 27 0.96
ACGTcount: A:0.53, C:0.10, G:0.12, T:0.25
Consensus pattern (28 bp):
TTATAAAAAGTGAAACAAATCGCAATAA
Found at i:46809 original size:8 final size:8
Alignment explanation
Indices: 46798--46832 Score: 61
Period size: 8 Copynumber: 4.4 Consensus size: 8
46788 AGAAAATAAA
*
46798 AAATATTT
1 AAATGTTT
46806 AAATGTTT
1 AAATGTTT
46814 AAATGTTT
1 AAATGTTT
46822 AAATGTTT
1 AAATGTTT
46830 AAA
1 AAA
46833 ATCATATTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 26 1.00
ACGTcount: A:0.46, C:0.00, G:0.09, T:0.46
Consensus pattern (8 bp):
AAATGTTT
Found at i:48102 original size:21 final size:22
Alignment explanation
Indices: 48064--48107 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
48054 TAATTAGTTT
* * *
48064 TTTATTTACATATTATTT-TGA
1 TTTATTTAAAAATAATTTATGA
48085 TTTATTTAAAAATAATTTATGA
1 TTTATTTAAAAATAATTTATGA
48107 T
1 T
48108 GTTTTAATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.36, C:0.02, G:0.05, T:0.57
Consensus pattern (22 bp):
TTTATTTAAAAATAATTTATGA
Found at i:49592 original size:16 final size:16
Alignment explanation
Indices: 49562--49591 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
49552 ATATTTACAT
49562 TTTATTTTTATTTTTA
1 TTTATTTTTATTTTTA
49578 TTTA-TTTTATTTTT
1 TTTATTTTTATTTTT
49592 TGTGTCAGGC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (16 bp):
TTTATTTTTATTTTTA
Found at i:50713 original size:21 final size:20
Alignment explanation
Indices: 50678--50721 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
50668 TACTTCGTTT
*
50678 TTATTTTTATTTTAATAATA
1 TTATTATTATTTTAATAATA
50698 TTATTATTATTTT--TAATA
1 TTATTATTATTTTAATAATA
50716 TTATTA
1 TTATTA
50722 CTATATATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 11 0.48
20 12 0.52
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (20 bp):
TTATTATTATTTTAATAATA
Found at i:50932 original size:13 final size:13
Alignment explanation
Indices: 50910--50943 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
50900 TTCTTCATTG
*
50910 ATTATTTTTTAAT
1 ATTATATTTTAAT
50923 ATTATATTTTAAT
1 ATTATATTTTAAT
50936 ATATATAT
1 AT-TATAT
50944 ATATATATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (13 bp):
ATTATATTTTAAT
Found at i:50941 original size:2 final size:2
Alignment explanation
Indices: 50934--50968 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
50924 TTATATTTTA
*
50934 AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
50969 CTTATAATAG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (2 bp):
AT
Found at i:52140 original size:10 final size:10
Alignment explanation
Indices: 52125--52159 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
52115 TTCATTTACC
52125 ATTTATTTTT
1 ATTTATTTTT
52135 ATTTATTTTT
1 ATTTATTTTT
* *
52145 ATCTATTTCT
1 ATTTATTTTT
52155 ATTTA
1 ATTTA
52160 CTAACGTTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.23, C:0.06, G:0.00, T:0.71
Consensus pattern (10 bp):
ATTTATTTTT
Found at i:61558 original size:1 final size:1
Alignment explanation
Indices: 61552--61599 Score: 69
Period size: 1 Copynumber: 48.0 Consensus size: 1
61542 TCCTAAGTTG
* * *
61552 AAAAAAAAAAAAAAAAAAAACAAAAAACAAAAAAAAAAAAAACAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
61600 CGCTTAGGGT
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
1 41 1.00
ACGTcount: A:0.94, C:0.06, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:62561 original size:105 final size:105
Alignment explanation
Indices: 62375--63274 Score: 1419
Period size: 105 Copynumber: 8.7 Consensus size: 105
62365 AGGTTTTACC
62375 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGTAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGTAAGTTCAACTTCACG
*
62440 ACGAAGGGACCGCTGGTTGTCAACAAATATTTCTCAATTT
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAATTT
*
62480 CAGGGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGTAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGTAAGTTCAACTTCACG
*
62545 ACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTT
66 ACGAAGGGACCGCTGGTTGTCAACAAAC-ATTTCTCAATTT
*
62586 CTGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGTAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGTAAGTTCAACTTCACG
*
62651 ACGAAGGGACCGCTGGTTGTCAACGAACATTTCTCAATTT
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAATTT
*
62691 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCTAGACAACGTAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGTAAGTTCAACTTCACG
*
62756 ACGAAGGGACCGCTGGTTGTCAACGAACATTTCTCAATTT
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAATTT
*
62796 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCTAGACAACGTAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGTAAGTTCAACTTCACG
* * *
62861 ACGAAAGGACCGATGGTTGTCAACGAACATTTCTCAATTT
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAATTT
62901 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGTAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGTAAGTTCAACTTCACG
*
62966 ACGAAGGGACCGCTGGTTGTCAACGAACATTTCTCAATTT
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAATTT
* * *
63006 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTTCAGACAATGCAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGTAAGTTCAACTTCACG
* * * *
63071 ACGAAGGGACCGCTGCTTGTCAAC-AACAACTTCCCAATCT
66 ACGAAGGGACCGCTGGTTGTCAACAAAC-ATTTCTCAATTT
* * *
63111 CAGAGCC-A----AACTTCACAACGAAGAATATTGGACTTCAGACAACGCAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGTAAGTTCAACTTCACG
* * * *
63171 ACGAAGGGACCGCTGCTTGTCAAC-AACAACTTCCCAATCT
66 ACGAAGGGACCGCTGGTTGTCAACAAAC-ATTTCTCAATTT
* * * *
63211 CAGAGCC-A----AACTTCACAACGAAGAATATTGGACTCTAGACAACGCAAGTCCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGTAAGTTCAACTTCACG
63271 ACGA
66 ACGA
63275 TGGATATCCA
Statistics
Matches: 767, Mismatches: 26, Indels: 9
0.96 0.03 0.01
Matches are distributed among these distances:
100 151 0.20
104 4 0.01
105 511 0.67
106 101 0.13
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (105 bp):
CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGTAAGTTCAACTTCACG
ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAATTT
Done.