genome.fa.s5901.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005901.1 Hibiscus syriacus cultivar Beakdansim tig00013863_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86270

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6589--6649	23	2.8	22	75	9	63	21	11	13	54	1.70
8156--8197	21	2.0	21	81	9	50	23	14	30	30	1.94
15809--15897	31	2.9	31	88	1	135	31	8	5	53	1.55
16379--16431	26	2.0	27	88	3	81	41	1	0	56	1.10
16379--16560	56	3.2	56	75	17	169	40	4	0	54	1.24
16405--16515	31	3.6	31	81	10	113	39	3	0	55	1.23
16492--16560	29	2.5	27	78	15	70	42	5	0	52	1.25
17093--17172	21	3.8	21	69	12	56	35	22	21	21	1.96
17221--17406	40	4.6	41	88	1	268	39	23	17	19	1.92
17221--17391	20	8.4	20	77	4	173	38	23	18	19	1.93
17221--17436	80	2.7	81	84	4	240	39	22	17	20	1.92
17972--18064	20	4.6	21	81	10	106	50	18	18	12	1.78
17972--18066	40	2.4	40	82	7	122	50	17	18	12	1.77
18094--18175	33	2.5	33	91	0	146	10	20	19	48	1.79
18242--18296	25	2.2	24	78	15	58	20	9	18	52	1.71
19865--20244	94	4.1	94	92	1	602	22	11	18	47	1.81
20306--20424	19	6.4	19	76	11	113	47	18	19	14	1.82
20823--20889	21	3.2	21	64	6	55	25	35	19	19	1.95
22241--22276	14	2.6	13	91	8	54	36	0	22	41	1.54
22383--22478	19	5.3	19	86	12	123	46	20	18	13	1.83
22383--22478	33	2.7	36	87	10	128	46	20	18	13	1.83
22383--22496	19	6.3	19	87	10	109	44	21	19	14	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22492--22630	19	7.7	19	70	18	100	14	20	19	46	1.84
22496--22643	33	4.3	33	77	11	152	14	20	19	45	1.85
22529--22601	20	3.7	20	83	5	87	16	19	20	43	1.88
24982--25044	6	10.5	6	85	0	81	3	25	0	71	1.01
24982--25044	9	7.0	9	85	0	81	3	25	0	71	1.01
24982--25044	15	4.2	15	93	0	99	3	25	0	71	1.01
25219--25272	24	2.2	24	93	0	90	40	20	18	20	1.91
26132--26222	21	4.4	21	79	9	107	17	16	27	38	1.91
26130--26222	41	2.3	41	88	0	141	17	17	26	38	1.91
26231--26285	20	2.7	21	89	10	80	12	16	23	47	1.81
26781--26870	45	2.0	45	97	0	171	36	6	11	45	1.66
26791--26862	23	3.2	23	64	18	60	34	8	9	47	1.67
27432--27470	7	5.6	7	84	9	53	43	2	0	53	1.14
27432--27470	13	3.0	13	82	10	53	43	2	0	53	1.14
27430--27478	24	2.0	24	84	7	64	44	6	0	48	1.27
28596--28644	25	2.0	24	88	7	73	24	6	0	69	1.11
28911--28960	19	2.6	19	84	6	66	18	22	4	56	1.58
29145--29178	17	2.0	17	88	11	52	23	5	0	70	1.09
37800--37847	21	2.3	21	79	17	55	72	0	22	4	1.01
38591--39272	94	7.1	94	85	4	959	34	24	17	23	1.96
38586--39272	193	3.6	193	99	0	1347	34	24	17	22	1.96
39309--39350	20	2.1	20	100	0	84	26	23	16	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39579--39617	7	5.6	7	84	9	53	43	2	0	53	1.14
39577--39625	24	2.0	24	84	7	64	44	6	0	48	1.27
39579--39617	13	3.0	13	82	10	53	43	2	0	53	1.14
40765--40813	25	2.0	24	88	7	73	24	6	0	69	1.11
41080--41129	19	2.6	19	84	6	66	18	22	4	56	1.58
41311--41344	17	2.0	17	88	11	52	23	5	0	70	1.09
45399--45429	2	15.5	2	100	0	62	48	0	0	51	1.00
49494--49716	124	1.8	123	87	4	333	36	18	21	24	1.95
60063--60130	31	2.2	32	82	10	79	30	4	13	51	1.60
64102--64171	35	2.0	35	83	5	88	25	22	5	45	1.74
64410--64445	2	18.0	2	100	0	72	50	0	0	50	1.00
65081--65188	54	2.0	54	90	3	173	38	8	20	32	1.82
69106--69254	67	2.2	67	81	2	174	27	18	14	39	1.90
84614--84731	57	2.1	57	79	14	124	36	11	14	38	1.81

Tables:   1

The End!