genome.fa.s5903.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005903.1 Hibiscus syriacus cultivar Beakdansim tig00013868_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  145609

Tables:   1   

This is table  1  of  1  ( 64 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
770--838	20	3.7	20	72	18	67	21	21	21	34	1.97
4909--4969	18	3.4	18	72	4	70	27	8	24	39	1.84
4908--4977	35	2.0	35	97	2	133	25	11	24	38	1.89
7570--7602	15	2.1	16	88	5	50	24	18	6	51	1.68
23216--23333	36	3.2	35	81	9	128	23	25	22	28	1.99
27089--27216	43	3.0	43	91	0	220	28	14	14	42	1.85
27616--27718	23	4.4	23	79	2	100	12	8	19	59	1.59
29702--29800	52	1.9	52	85	0	135	30	8	12	49	1.69
31142--31179	18	2.1	18	100	0	76	47	5	5	42	1.48
36369--36398	6	5.0	6	100	0	60	0	16	50	33	1.46
36485--36733	21	11.9	20	72	13	175	35	22	20	21	1.96
36488--36708	42	5.3	42	93	1	374	36	23	19	20	1.95
36488--36733	84	3.0	83	88	4	363	35	22	20	21	1.96
44261--44304	20	2.2	19	84	15	54	63	4	4	27	1.33
47217--47248	15	2.2	15	94	5	57	50	0	0	50	1.00
51177--51216	21	1.9	21	94	0	71	30	15	7	47	1.72
51211--51308	32	3.0	33	91	4	155	32	7	15	44	1.73
51294--51348	13	4.2	13	75	13	58	34	3	12	49	1.59
51544--51600	21	2.7	21	91	0	96	19	26	26	28	1.99
51766--51820	15	3.6	15	82	4	74	30	12	12	43	1.80
51768--51817	17	3.1	17	80	11	61	34	10	12	44	1.75
51910--51941	16	2.0	17	88	11	50	43	21	21	12	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55123--55154	2	16.0	2	100	0	64	50	0	0	50	1.00
56143--57223	545	2.0	545	99	0	2135	37	13	16	31	1.88
63922--63957	2	18.0	2	100	0	72	50	0	0	50	1.00
68541--68617	11	7.0	11	80	0	82	19	6	16	57	1.61
68543--68628	33	2.6	33	79	0	100	18	6	16	58	1.60
68548--68611	22	2.9	22	92	0	101	20	7	15	56	1.64
70574--70624	24	2.1	25	88	3	77	13	27	17	41	1.87
74316--74363	21	2.3	21	100	0	96	43	20	10	25	1.83
74327--74374	21	2.3	21	88	0	69	50	25	10	14	1.74
75858--75940	24	3.5	24	80	3	96	49	15	14	20	1.79
75847--75952	48	2.2	48	83	8	128	49	15	16	19	1.80
78815--78872	23	2.5	23	86	5	73	22	27	24	25	2.00
83801--83856	25	2.2	26	83	3	69	42	1	14	41	1.56
90394--90438	18	2.6	17	86	6	56	37	8	24	28	1.86
91020--91096	37	2.1	37	97	0	145	37	37	10	14	1.80
91273--91349	38	2.1	37	90	7	120	38	33	10	16	1.83
90967--91562	257	2.4	246	86	7	813	36	27	11	25	1.90
91318--91774	207	2.2	206	84	9	584	38	24	12	25	1.90
96167--96211	23	2.0	23	86	0	63	26	28	24	20	1.99
96190--96494	149	2.0	149	99	0	601	34	21	16	27	1.95
96816--96854	19	2.1	19	85	4	53	41	20	0	38	1.53
96880--96926	16	3.0	16	75	15	53	42	17	6	34	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96961--96998	2	19.0	2	100	0	76	50	0	0	50	1.00
98019--98063	21	2.1	21	87	0	63	15	24	28	31	1.96
100339--100375	6	6.2	6	100	0	74	0	16	48	35	1.46
101287--101379	46	2.0	46	97	0	177	34	20	4	40	1.72
101531--101567	19	1.9	19	89	10	58	64	0	0	35	0.94
101921--101951	16	1.9	16	100	0	62	58	22	12	6	1.58
101983--102083	10	9.1	10	71	19	58	59	17	11	10	1.60
101993--102083	23	3.9	23	76	8	94	59	17	12	10	1.61
101985--102091	23	4.6	23	70	13	67	59	19	11	9	1.58
102357--102398	14	3.0	14	85	0	57	54	19	14	11	1.70
104612--104657	2	23.5	2	86	4	67	0	45	0	54	0.99
107983--108023	20	2.0	20	90	0	64	36	17	9	36	1.82
116458--116501	23	1.9	23	95	0	79	27	22	20	29	1.99
121577--121618	14	3.2	14	74	19	54	38	0	4	57	1.20
121578--121620	13	3.4	13	78	15	54	41	0	4	53	1.21
124206--124251	20	2.3	20	84	0	65	32	10	17	39	1.84
126424--126636	103	2.1	103	94	0	372	25	13	23	37	1.91
131441--131813	187	2.0	185	94	1	656	29	22	17	29	1.97
132794--132859	14	4.6	14	76	10	62	46	27	0	25	1.53
132857--132894	14	2.7	14	88	8	51	34	0	23	42	1.55

Tables:   1

The End!