genome.fa.s5904.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005904.1 Hibiscus syriacus cultivar Beakdansim tig00013869_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87775

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6809--6848	3	13.3	3	100	0	80	32	0	0	67	0.91
6858--6888	16	1.9	16	93	0	53	35	0	12	51	1.40
8182--8332	60	2.5	59	85	1	194	32	21	6	39	1.80
8176--8275	29	3.4	29	68	15	78	34	23	5	38	1.76
8490--8644	60	2.6	59	75	10	152	39	6	21	32	1.79
9050--9089	2	20.0	2	100	0	80	50	0	0	50	1.00
15112--15139	11	2.5	11	100	0	56	75	0	0	25	0.81
17095--17316	103	2.2	103	100	0	444	48	9	6	35	1.62
22199--22271	24	3.0	24	89	0	83	13	35	17	32	1.89
22216--22271	24	2.3	24	100	0	112	14	35	21	28	1.92
24550--24596	23	2.0	23	87	0	67	23	12	12	51	1.74
39873--39958	35	2.5	34	86	3	120	30	18	24	26	1.98
44388--44433	20	2.3	20	81	7	58	54	0	4	41	1.20
45917--45948	16	2.0	16	100	0	64	68	6	6	18	1.32
46200--46345	12	12.4	12	68	22	71	46	0	0	52	1.10
46224--46280	20	2.7	21	78	10	62	50	1	0	47	1.11
46229--46363	31	4.5	31	75	16	117	48	0	0	51	1.06
46233--46425	6	32.7	6	68	24	83	47	0	0	51	1.08
46231--46430	76	2.8	74	80	14	192	47	0	0	52	1.08
46329--46408	16	4.8	16	76	16	65	48	0	1	50	1.08
46369--46423	21	2.6	21	80	8	58	49	0	0	50	1.00
46731--47097	20	18.5	20	83	6	433	34	26	18	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46750--47097	99	3.5	99	87	5	454	34	26	18	20	1.96
47774--47820	24	2.0	24	87	8	69	25	14	21	38	1.92
50269--50530	32	7.7	33	80	13	155	45	18	20	14	1.85
50269--50574	19	17.9	17	79	17	261	45	18	21	15	1.86
50269--50574	51	5.9	54	85	11	341	45	18	21	15	1.86
50269--50590	174	1.9	171	89	5	506	44	18	21	15	1.86
50297--50574	32	8.1	35	83	15	277	44	17	21	15	1.86
50297--50574	18	16.1	18	81	15	340	44	17	21	15	1.86
50581--50682	19	5.6	19	85	12	151	14	23	17	44	1.86
50780--50819	14	2.8	14	92	3	62	40	22	0	37	1.54
52753--52809	14	3.7	14	77	20	60	45	22	21	10	1.82
52698--52831	19	7.6	19	76	16	119	45	23	19	11	1.82
52716--52809	51	1.9	47	85	8	125	45	24	20	9	1.80
52735--52826	33	2.8	33	93	1	159	46	21	20	10	1.81
52827--52955	19	7.3	19	75	17	125	8	17	28	45	1.77
52827--52918	33	2.8	33	93	3	150	7	18	28	45	1.76
52998--53462	90	5.1	92	95	3	843	46	18	12	22	1.83
52998--53462	183	2.6	182	96	2	864	46	18	12	22	1.83
55158--55247	14	5.7	14	74	23	81	42	23	25	8	1.83
55150--55264	33	3.5	33	95	0	212	45	20	24	9	1.81
55157--55269	19	6.8	18	72	23	88	43	22	24	9	1.83
55281--55335	14	3.6	14	73	21	56	9	25	23	41	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55265--55335	33	2.2	33	94	0	124	8	22	25	43	1.81
55276--55357	33	2.5	33	89	2	119	9	25	21	42	1.84
55288--55376	20	4.8	20	72	19	75	12	24	19	43	1.85
55456--55526	33	2.2	33	92	0	115	47	18	22	11	1.80
55908--56100	20	9.6	20	82	5	219	19	19	25	35	1.95
55908--56100	60	3.2	60	83	0	251	19	19	25	35	1.95
56156--56207	20	2.6	20	96	0	95	21	13	26	38	1.90
56460--56492	14	2.4	14	90	10	50	42	6	12	39	1.67
56858--56915	27	2.2	26	84	12	73	53	1	0	44	1.10
56866--56907	14	2.9	15	76	20	52	57	0	0	42	0.99
57538--57644	45	2.3	46	87	4	155	27	22	20	29	1.98
62040--62098	23	2.7	21	82	15	75	30	20	22	27	1.98
64793--64954	84	1.9	83	85	6	220	30	24	18	25	1.98
64858--64909	19	2.7	19	100	0	104	30	30	21	17	1.96
67191--67292	20	5.1	19	88	8	141	15	26	38	19	1.92
67191--67292	39	2.5	39	90	4	150	15	26	38	19	1.92
68689--68735	19	2.4	20	82	3	60	27	12	6	53	1.63
68714--68759	23	2.0	24	83	12	60	36	8	6	47	1.60
68773--68820	23	2.1	23	100	0	96	16	18	20	43	1.88
70036--70098	20	3.1	20	90	4	99	15	28	38	17	1.91
77783--77837	12	4.6	12	75	22	53	69	9	7	14	1.36
86464--86500	19	2.0	19	89	5	58	13	0	35	51	1.41

Tables:   1

The End!