genome.fa.s5905.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005905.1 Hibiscus syriacus cultivar Beakdansim tig00013871_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  131366

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5616--5647	17	1.9	16	93	6	55	65	0	0	34	0.93
8956--9025	36	1.9	37	82	5	90	21	2	5	70	1.22
16121--16185	8	7.9	8	75	13	60	80	4	1	13	0.95
16112--16189	21	3.7	21	74	19	65	78	5	1	15	0.99
16215--16312	51	1.9	50	81	6	117	59	5	12	23	1.53
19245--19304	30	2.0	30	93	0	102	41	16	10	31	1.81
21466--21509	21	2.1	21	91	0	70	27	20	22	29	1.99
21916--22003	19	4.3	19	74	17	77	29	27	5	37	1.80
28196--28253	3	19.7	3	75	10	57	32	1	3	62	1.22
30368--30403	4	8.8	4	87	6	54	27	0	0	72	0.85
30756--30785	7	4.3	7	95	0	51	30	0	3	66	1.07
31209--31249	18	2.3	18	91	8	66	21	2	0	75	0.92
31208--31257	18	2.8	18	75	19	52	24	2	0	74	0.93
32834--32887	14	3.8	14	82	4	63	24	14	9	51	1.71
35864--35899	2	18.0	2	100	0	72	50	0	0	50	1.00
38449--38672	114	2.0	113	91	2	360	34	14	19	31	1.92
41135--41189	22	2.5	22	87	0	83	32	12	16	38	1.86
41589--42359	113	6.8	113	90	2	1088	38	14	18	28	1.90
42302--42399	39	2.5	40	94	1	171	48	8	24	18	1.75
42334--42399	20	3.3	20	66	29	59	51	7	25	15	1.69
42079--42625	264	2.1	264	87	2	776	39	14	19	26	1.90
42191--42513	152	2.1	152	88	3	472	41	13	18	26	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42336--42754	225	1.9	222	88	3	644	38	14	20	27	1.91
41847--42748	489	1.8	487	91	1	1495	38	14	19	27	1.90
42342--42754	113	3.7	113	90	2	622	37	14	19	27	1.91
44004--44060	27	2.0	29	87	12	84	29	5	0	64	1.15
44893--44934	15	2.7	16	82	14	52	33	4	4	57	1.41
48461--48885	64	6.6	64	91	0	645	35	21	12	30	1.91
48911--49123	66	3.4	66	67	18	182	37	25	13	23	1.92
48911--49128	121	1.8	121	92	0	373	36	26	14	23	1.93
49187--49420	85	2.8	85	84	4	294	33	19	19	27	1.96
50155--50237	3	27.7	3	90	4	132	32	1	2	63	1.15
53248--53287	20	2.0	20	90	4	64	37	0	7	55	1.29
53480--53549	36	2.0	36	91	2	115	22	35	24	17	1.95
56721--56758	19	2.0	20	89	5	60	42	0	0	57	0.98
59920--59961	22	2.0	22	85	4	59	47	7	0	45	1.30
62329--62360	15	2.1	15	94	0	55	46	6	3	43	1.44
64048--64124	39	2.0	38	82	5	93	46	5	1	46	1.33
73912--73995	44	1.9	44	90	0	132	38	10	20	30	1.87
74006--74060	23	2.3	24	84	9	69	58	12	7	21	1.59
76406--76569	88	1.9	87	82	5	204	37	12	14	36	1.83
82446--82517	3	24.0	3	95	0	117	34	2	0	62	1.10
84507--84539	16	2.1	16	100	0	66	27	0	18	54	1.44
87509--87533	9	2.8	9	100	0	50	12	8	32	48	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88008--88066	3	18.7	3	86	10	82	66	0	1	32	1.02
88268--88497	43	5.4	43	74	11	161	23	18	31	25	1.97
88214--88549	129	2.6	130	94	1	568	23	18	31	26	1.98
88215--88539	46	7.4	45	71	15	189	24	18	30	26	1.98
89018--89375	63	5.6	62	71	16	202	40	12	17	29	1.86
89597--89753	68	2.3	68	94	3	273	43	12	12	31	1.79
89725--89781	27	2.1	27	90	6	89	43	15	8	31	1.78
89866--89954	29	3.1	29	88	8	128	44	12	12	30	1.79
89871--89968	28	3.4	27	79	13	99	47	14	12	25	1.78
90345--90636	156	1.9	157	86	2	426	39	10	16	32	1.84
91026--91053	14	2.0	14	100	0	56	21	0	28	50	1.49
92225--92262	11	3.4	11	89	7	58	5	13	10	71	1.30
92879--92972	46	2.1	45	83	2	116	36	9	26	27	1.88
95404--95465	32	2.0	32	96	3	117	61	9	14	14	1.57
98820--98844	9	2.8	9	100	0	50	12	8	32	48	1.69
99319--99371	3	16.7	3	84	11	70	66	0	1	32	1.03
103531--103585	19	2.9	19	80	0	65	30	18	30	20	1.96
104780--104824	21	2.0	22	84	16	58	60	0	4	35	1.17
104780--104851	23	3.1	22	79	15	58	59	0	2	37	1.12
112409--112486	31	2.5	31	78	15	97	23	8	14	53	1.68
121247--121293	24	2.0	24	86	0	67	46	2	0	51	1.13
122989--123045	30	1.9	30	85	7	80	22	14	24	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
128760--128809	24	2.1	24	85	7	66	28	2	12	58	1.45

Tables:   1

The End!