genome.fa.s5906.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005906.1 Hibiscus syriacus cultivar Beakdansim tig00013872_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93446

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2749--2792	19	2.3	19	88	0	61	54	15	18	11	1.70
4307--4348	13	3.2	13	80	9	50	19	38	26	16	1.92
6862--6890	2	15.0	2	92	7	51	51	0	0	48	1.00
14422--14607	93	2.0	93	94	0	327	32	12	10	44	1.77
15432--15823	186	2.1	187	91	2	641	44	8	3	43	1.52
15731--15825	40	2.3	41	77	8	104	42	1	1	55	1.13
16140--16218	39	2.0	40	85	12	108	35	0	0	64	0.94
16194--16316	40	2.9	41	74	17	110	48	0	0	49	1.12
16279--16311	9	3.8	9	84	8	50	36	0	0	63	0.95
18440--18511	24	3.0	24	81	0	90	50	16	12	20	1.78
18438--18548	48	2.3	48	81	9	120	48	15	12	23	1.79
18441--18546	24	4.4	24	69	15	76	48	16	12	23	1.79
20983--21012	10	3.0	10	95	0	51	23	20	20	36	1.95
21025--21059	18	1.9	18	94	0	61	17	17	48	17	1.81
23110--23177	24	2.8	24	84	0	82	52	16	11	19	1.73
23127--23204	24	3.2	24	83	0	84	46	16	14	23	1.83
26203--26246	22	2.0	23	81	4	54	29	9	43	18	1.80
27984--28021	20	1.9	20	88	0	58	28	0	23	47	1.52
35268--35530	55	4.8	54	73	10	194	26	23	17	31	1.97
35297--35484	56	3.4	55	75	13	172	22	25	19	32	1.97
35906--37255	37	36.2	37	75	10	976	22	18	22	35	1.96
35875--37212	153	9.0	152	73	13	783	23	18	22	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35906--37138	190	6.6	188	80	8	1142	23	18	22	35	1.96
36055--37211	110	10.4	112	77	9	479	23	18	22	35	1.96
36055--37245	299	4.0	298	79	10	1167	23	18	22	35	1.96
36292--37245	263	3.7	261	87	4	1249	22	18	22	35	1.95
36062--37247	72	16.0	72	76	10	807	22	18	22	35	1.96
38478--38524	2	24.0	2	95	4	87	48	0	0	51	1.00
40877--40948	21	3.4	21	90	5	101	16	15	22	45	1.84
48133--48523	185	2.1	186	92	1	653	44	8	3	43	1.52
48840--48911	36	1.9	38	81	15	89	34	0	0	65	0.93
48971--49003	9	3.8	9	84	8	50	36	0	0	63	0.95
51132--51203	24	3.0	24	87	0	108	50	16	15	18	1.79
51134--51203	12	5.8	12	73	6	61	50	17	15	17	1.79
51139--51226	24	3.7	24	83	6	99	46	15	14	22	1.83
55756--55827	24	3.0	24	85	0	99	50	16	13	19	1.79
55771--55827	12	4.8	12	72	8	53	47	17	15	19	1.83
55771--55850	24	3.3	24	83	0	88	46	16	15	22	1.84
58010--58053	22	2.0	23	81	4	54	29	6	43	20	1.78
58737--58808	21	3.4	21	90	5	101	16	15	22	45	1.84
65994--66384	185	2.1	186	92	1	653	44	8	3	43	1.52
66752--66874	40	2.9	41	74	17	110	48	0	0	49	1.12
66837--66869	9	3.8	9	84	8	50	36	0	0	63	0.95
68989--69060	24	3.0	24	87	0	108	50	16	15	18	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68991--69060	12	5.8	12	73	6	61	50	17	15	17	1.79
68996--69083	24	3.7	24	83	6	99	46	15	14	22	1.83
71526--71555	10	3.0	10	95	0	51	23	20	20	36	1.95
73625--73696	24	3.0	24	85	0	99	50	16	13	19	1.79
73640--73696	12	4.8	12	72	8	53	47	17	15	19	1.83
73640--73719	24	3.3	24	83	0	88	46	16	15	22	1.84
75879--75922	22	2.0	23	81	4	54	29	6	43	20	1.78
77659--77696	20	1.9	20	88	0	58	28	0	23	47	1.52
84931--85193	55	4.8	54	73	10	194	26	23	17	31	1.97
84960--85147	56	3.4	55	75	13	172	22	25	19	32	1.97
85568--86916	37	36.2	37	75	10	958	23	18	22	35	1.96
85558--86874	153	8.8	150	74	12	814	23	18	22	35	1.96
85568--86800	190	6.6	188	79	8	1124	23	18	22	35	1.96
85717--86906	299	4.0	298	79	10	1158	23	18	22	35	1.96
85724--86908	72	16.0	72	76	10	807	23	18	22	35	1.96
88137--88176	2	21.0	2	90	10	66	47	0	0	52	1.00
90433--90500	20	3.4	20	88	6	93	16	16	22	45	1.85
90433--90500	21	3.4	21	88	6	88	16	16	22	45	1.85

Tables:   1

The End!