Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005907.1 Hibiscus syriacus cultivar Beakdansim tig00013876_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64288

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3299--3329
2
15.5
2
100
0
62
48
0
0
51
1.00
18729--18905
94
1.9
93
90
3
284
35
5
9
50
1.56
26309--26440
67
2.0
67
93
0
228
41
18
17
22
1.90
28339--28414
31
2.4
31
77
2
80
27
31
25
15
1.96
28291--28414
63
2.0
62
81
12
146
26
29
26
17
1.98
29284--29317
7
4.9
7
96
0
59
32
29
23
14
1.94
29283--29321
7
5.6
7
93
0
51
33
28
23
15
1.95
29312--29353
22
1.9
22
95
0
75
11
23
45
19
1.83
29350--29448
9
10.3
9
77
10
90
29
28
26
16
1.97
29356--29449
19
4.8
19
82
8
109
29
28
25
15
1.96
29375--29449
29
2.5
31
91
8
129
29
28
26
16
1.96
35677--35751
31
2.4
31
79
2
87
30
32
22
14
1.94
35628--35751
63
2.0
63
82
9
155
28
29
25
16
1.97
36621--36658
7
5.4
7
100
0
76
26
28
28
15
1.96
36648--36690
22
2.0
22
100
0
86
9
23
48
18
1.76
36687--36785
9
10.3
9
73
12
81
30
28
26
15
1.96
36693--36786
19
4.8
19
77
13
86
30
28
24
15
1.96
38069--38100
17
1.9
16
93
6
55
62
9
0
28
1.26
41980--42023
13
3.0
15
77
16
56
34
29
0
36
1.58
43253--43299
19
2.5
20
86
10
64
40
0
0
59
0.97
43279--43377
32
3.3
31
79
12
116
49
1
1
48
1.14
44093--44119
14
1.9
14
100
0
54
48
0
7
44
1.31
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44135--44175
14
2.7
16
74
11
50
46
0
0
53
1.00
44418--44462
2
24.0
2
82
13
60
46
0
2
51
1.13
46074--46111
8
5.0
8
87
9
53
39
0
7
52
1.31
46203--46234
13
2.4
14
90
10
50
15
6
0
78
0.95
57553--58221
105
6.4
105
95
0
1214
31
25
18
23
1.98
59692--59790
16
5.8
16
68
25
51
22
7
1
69
1.18
62126--62186
19
3.2
19
88
6
88
44
9
22
22
1.82

Tables:   1

The End!