Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01005908.1 Hibiscus syriacus cultivar Beakdansim tig00013878_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33
Found at i:445 original size:21 final size:21
Alignment explanation
Indices: 379--445 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
369 GTGAATCGGG
*
379 CTCTTGAATGGTGGGA-GGGA
1 CTCTTGAACGGTGGGAGGGGA
* * ** * *
399 CCTCTTCAACGATGACAGTGGC
1 -CTCTTGAACGGTGGGAGGGGA
421 CTCTTGAACGGTGGGAGGGGA
1 CTCTTGAACGGTGGGAGGGGA
442 CTCT
1 CTCT
446 CGAGGAATGA
Statistics
Matches: 32, Mismatches: 13, Indels: 2
0.68 0.28 0.04
Matches are distributed among these distances:
21 30 0.94
22 2 0.06
ACGTcount: A:0.19, C:0.21, G:0.36, T:0.24
Consensus pattern (21 bp):
CTCTTGAACGGTGGGAGGGGA
Found at i:464 original size:42 final size:41
Alignment explanation
Indices: 379--501 Score: 113
Period size: 42 Copynumber: 2.9 Consensus size: 41
369 GTGAATCGGG
* * * * *
379 CTCTTGAATGGTGGGA-GGGACCTCTTCAACGATGACAGTGGC
1 CTCTTGAACGGTGGGAGGGGA-CTC-TCGAGGATGATAGGGGC
421 CTCTTGAACGGTGGGAGGGGACTCTCGAGGAATGATAGGGGC
1 CTCTTGAACGGTGGGAGGGGACTCTCGAGG-ATGATAGGGGC
* * * * *
463 CTCTTCAACGATAGGAGTGGACTCTTGAGGGATGATAGG
1 CTCTTGAACGGTGGGAGGGGACTCTCGA-GGATGATAGG
502 CGAGTCGGGC
Statistics
Matches: 68, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
41 4 0.06
42 58 0.85
43 6 0.09
ACGTcount: A:0.23, C:0.18, G:0.37, T:0.23
Consensus pattern (41 bp):
CTCTTGAACGGTGGGAGGGGACTCTCGAGGATGATAGGGGC
Found at i:2551 original size:33 final size:33
Alignment explanation
Indices: 2494--2628 Score: 155
Period size: 33 Copynumber: 4.0 Consensus size: 33
2484 ACGAGATAAT
* * *
2494 GAGAATTGCAACGCGGAAATGACTATCGCAATGA
1 GAGAATCGCAACGC-GAAATGACAATCGCAACGA
* *
2528 GAGAATCGCAACGCGAAATGACTATCGCGACGA
1 GAGAATCGCAACGCGAAATGACAATCGCAACGA
*
2561 GAGAATCGCAACGCGAAATGAAAATCGCAACGCGAA
1 GAGAATCGCAACGCGAAATGACAATCGCAA--CG-A
*
2597 TGAAAATCGCAACGCGAAATGA-AATCGCAACG
1 -GAGAATCGCAACGCGAAATGACAATCGCAACG
2629 CGAAATGAAA
Statistics
Matches: 90, Mismatches: 7, Indels: 8
0.86 0.07 0.08
Matches are distributed among these distances:
33 44 0.49
34 15 0.17
35 2 0.02
36 9 0.10
37 20 0.22
ACGTcount: A:0.41, C:0.21, G:0.25, T:0.13
Consensus pattern (33 bp):
GAGAATCGCAACGCGAAATGACAATCGCAACGA
Found at i:2600 original size:18 final size:19
Alignment explanation
Indices: 2469--2650 Score: 154
Period size: 19 Copynumber: 10.1 Consensus size: 19
2459 TCTTTTGGTT
*
2469 GAAATGAAAATCGCAACGA
1 GAAATGAAAATCGCAACGC
* *
2488 GATAATGAGAATTGCAACGC
1 GA-AATGAAAATCGCAACGC
** *
2508 GGAAATGACTATCGCAA--T
1 -GAAATGAAAATCGCAACGC
*
2526 G--A-GAGAATCGCAACGC
1 GAAATGAAAATCGCAACGC
** *
2542 GAAATGACTATCGCGA--C
1 GAAATGAAAATCGCAACGC
*
2559 G--A-GAGAATCGCAACGC
1 GAAATGAAAATCGCAACGC
2575 GAAATGAAAATCGCAACGC
1 GAAATGAAAATCGCAACGC
2594 G-AATGAAAATCGCAACGC
1 GAAATGAAAATCGCAACGC
2612 GAAATG-AAATCGCAACGC
1 GAAATGAAAATCGCAACGC
*
2630 GAAATGAAAATCGCAATGC
1 GAAATGAAAATCGCAACGC
2649 GA
1 GA
2651 TTTTGGTTTC
Statistics
Matches: 131, Mismatches: 18, Indels: 28
0.74 0.10 0.16
Matches are distributed among these distances:
14 17 0.13
15 2 0.02
16 3 0.02
17 3 0.02
18 38 0.29
19 41 0.31
20 25 0.19
21 2 0.02
ACGTcount: A:0.43, C:0.20, G:0.24, T:0.13
Consensus pattern (19 bp):
GAAATGAAAATCGCAACGC
Found at i:2679 original size:19 final size:19
Alignment explanation
Indices: 2646--2712 Score: 80
Period size: 19 Copynumber: 3.5 Consensus size: 19
2636 AAAATCGCAA
**
2646 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTTATTTCGCGT
2665 TGCGATTTTTATTTCGCGT
1 TGCGATTTTTATTTCGCGT
** *
2684 TGCGATAGTTATTTCCGCTT
1 TGCGATTTTTATTT-CGCGT
2704 TGCGATTTT
1 TGCGATTTT
2713 CATTCTCGAA
Statistics
Matches: 40, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
19 29 0.73
20 11 0.28
ACGTcount: A:0.10, C:0.16, G:0.24, T:0.49
Consensus pattern (19 bp):
TGCGATTTTTATTTCGCGT
Found at i:3319 original size:20 final size:20
Alignment explanation
Indices: 3226--3319 Score: 89
Period size: 20 Copynumber: 4.7 Consensus size: 20
3216 CGCTAAGTAA
*
3226 ATCGCGTTGCGAAAGTCAGT
1 ATCGCGTTGCGATAGTCAGT
* *
3246 ATCGCGTTGCGAAAGTAAGT
1 ATCGCGTTGCGATAGTCAGT
* ** * *
3266 ATCTCGTTGCGATTTTTTATT
1 ATCGCGTTGCGA-TAGTCAGT
*
3287 ATCGCATTGCGATAGTCAGT
1 ATCGCGTTGCGATAGTCAGT
*
3307 ATCGCATTGCGAT
1 ATCGCGTTGCGAT
3320 TTTCCCAATT
Statistics
Matches: 60, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
20 47 0.78
21 13 0.22
ACGTcount: A:0.23, C:0.18, G:0.24, T:0.34
Consensus pattern (20 bp):
ATCGCGTTGCGATAGTCAGT
Found at i:3338 original size:41 final size:41
Alignment explanation
Indices: 3247--3378 Score: 124
Period size: 41 Copynumber: 3.2 Consensus size: 41
3237 AAAGTCAGTA
* * * ** *
3247 TCGCGTTGCGAAAGTAAGTATCTCGTTGCGATTTT-TTATT
1 TCGCGTTGCGATAGTAAGTATCGCATTGCGATTTTCCCAAT
* *
3287 ATCGCATTGCGATAGTCAGTATCGCATTGCGATTTTCCCAAT
1 -TCGCGTTGCGATAGTAAGTATCGCATTGCGATTTTCCCAAT
* ** *
3329 TCGCGTTGCGAT-TTACTTATTCGCATTGCGAATTTCCCAAT
1 TCGCGTTGCGATAGTAAGTA-TCGCATTGCGATTTTCCCAAT
3370 TCGCGTTGC
1 TCGCGTTGC
3379 AATTTACTTA
Statistics
Matches: 75, Mismatches: 14, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
40 3 0.04
41 70 0.93
42 2 0.03
ACGTcount: A:0.20, C:0.22, G:0.20, T:0.38
Consensus pattern (41 bp):
TCGCGTTGCGATAGTAAGTATCGCATTGCGATTTTCCCAAT
Found at i:3352 original size:20 final size:20
Alignment explanation
Indices: 3308--3400 Score: 87
Period size: 20 Copynumber: 4.5 Consensus size: 20
3298 ATAGTCAGTA
* **
3308 TCGCATTGCGATTTTCCCAAT
1 TCGCATTGCGA-TTTACTTAT
*
3329 TCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTACTTAT
* **
3349 TCGCATTGCGAATTTCCCAAT
1 TCGCATTGCG-ATTTACTTAT
* *
3370 TCGCGTTGCAATTTACTTAT
1 TCGCATTGCGATTTACTTAT
3390 TCGCATTGCGA
1 TCGCATTGCGA
3401 ATTGGGAAAA
Statistics
Matches: 56, Mismatches: 15, Indels: 3
0.76 0.20 0.04
Matches are distributed among these distances:
20 31 0.55
21 25 0.45
ACGTcount: A:0.19, C:0.25, G:0.17, T:0.39
Consensus pattern (20 bp):
TCGCATTGCGATTTACTTAT
Found at i:3384 original size:41 final size:41
Alignment explanation
Indices: 3308--3403 Score: 174
Period size: 41 Copynumber: 2.3 Consensus size: 41
3298 ATAGTCAGTA
* *
3308 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
1 TCGCATTGCGAATTTCCCAATTCGCGTTGCAATTTACTTAT
3349 TCGCATTGCGAATTTCCCAATTCGCGTTGCAATTTACTTAT
1 TCGCATTGCGAATTTCCCAATTCGCGTTGCAATTTACTTAT
3390 TCGCATTGCGAATT
1 TCGCATTGCGAATT
3404 GGGAAAATCG
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 53 1.00
ACGTcount: A:0.20, C:0.24, G:0.17, T:0.40
Consensus pattern (41 bp):
TCGCATTGCGAATTTCCCAATTCGCGTTGCAATTTACTTAT
Found at i:9355 original size:16 final size:17
Alignment explanation
Indices: 9326--9359 Score: 61
Period size: 16 Copynumber: 2.1 Consensus size: 17
9316 ATCGCCGACT
9326 GAAATTTCACTATTCAC
1 GAAATTTCACTATTCAC
9343 GAAATTT-ACTATTCAC
1 GAAATTTCACTATTCAC
9359 G
1 G
9360 TGAATAGTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.59
17 7 0.41
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (17 bp):
GAAATTTCACTATTCAC
Found at i:10040 original size:18 final size:19
Alignment explanation
Indices: 10005--10041 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
9995 CACGGAATGT
10005 AAGATTACCAGTGGGAATAA
1 AAGATTACCAG-GGGAATAA
10025 AAGATTACCA-GGGAATA
1 AAGATTACCAGGGGAATA
10042 GGATTACTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 7 0.41
20 10 0.59
ACGTcount: A:0.46, C:0.11, G:0.24, T:0.19
Consensus pattern (19 bp):
AAGATTACCAGGGGAATAA
Found at i:11098 original size:12 final size:12
Alignment explanation
Indices: 11081--11105 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
11071 GTGTGGAAAA
11081 GCAGGCAGGTAG
1 GCAGGCAGGTAG
11093 GCAGGCAGGTAG
1 GCAGGCAGGTAG
11105 G
1 G
11106 GCCGTTGAGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.16, G:0.52, T:0.08
Consensus pattern (12 bp):
GCAGGCAGGTAG
Found at i:11649 original size:2 final size:2
Alignment explanation
Indices: 11642--11686 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
11632 CTTTACAACT
11642 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
11684 TA T
1 TA T
11687 TGCAAACGTG
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:15691 original size:3 final size:3
Alignment explanation
Indices: 15683--15709 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
15673 ATAACAACCC
15683 CAT CAT CAT CAT CAT CAT CAT CAT CAT
1 CAT CAT CAT CAT CAT CAT CAT CAT CAT
15710 TTACATTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33
Consensus pattern (3 bp):
CAT
Found at i:19839 original size:21 final size:21
Alignment explanation
Indices: 19813--19867 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
19803 ACGACCTACC
* *
19813 AGGTCGTCATGTAGTCCCCAA
1 AGGTCGCCATGCAGTCCCCAA
*
19834 AGGTCGCCATACAGTCCCCAA
1 AGGTCGCCATGCAGTCCCCAA
*
19855 AAGTCGCCATGCA
1 AGGTCGCCATGCA
19868 ATCTAGAATA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.27, C:0.33, G:0.22, T:0.18
Consensus pattern (21 bp):
AGGTCGCCATGCAGTCCCCAA
Found at i:21927 original size:18 final size:18
Alignment explanation
Indices: 21904--21953 Score: 100
Period size: 18 Copynumber: 2.8 Consensus size: 18
21894 AAAGTCAATC
21904 TTTGATTTTGAAAACTGT
1 TTTGATTTTGAAAACTGT
21922 TTTGATTTTGAAAACTGT
1 TTTGATTTTGAAAACTGT
21940 TTTGATTTTGAAAA
1 TTTGATTTTGAAAA
21954 ATAAGCGCAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.30, C:0.04, G:0.16, T:0.50
Consensus pattern (18 bp):
TTTGATTTTGAAAACTGT
Found at i:23951 original size:13 final size:13
Alignment explanation
Indices: 23933--23960 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
23923 GGTTGCTTGG
23933 ATCTCGCTTGAGT
1 ATCTCGCTTGAGT
23946 ATCTCGCTTGAGT
1 ATCTCGCTTGAGT
23959 AT
1 AT
23961 GGGGATGCTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.18, C:0.21, G:0.21, T:0.39
Consensus pattern (13 bp):
ATCTCGCTTGAGT
Found at i:34355 original size:31 final size:31
Alignment explanation
Indices: 34320--34393 Score: 94
Period size: 31 Copynumber: 2.4 Consensus size: 31
34310 TGACCTGAAC
* *
34320 CGAAACAAACTGGCCCGATACCAACCCGACT
1 CGAAACAAACCGGCCCGAAACCAACCCGACT
* * *
34351 CGAAACCAACCGGTCCGAAACTAACCCGACT
1 CGAAACAAACCGGCCCGAAACCAACCCGACT
*
34382 CGAAACCAACCG
1 CGAAACAAACCG
34394 ATCCGATATT
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.36, C:0.39, G:0.16, T:0.08
Consensus pattern (31 bp):
CGAAACAAACCGGCCCGAAACCAACCCGACT
Found at i:34371 original size:15 final size:15
Alignment explanation
Indices: 34318--34393 Score: 62
Period size: 15 Copynumber: 4.9 Consensus size: 15
34308 GTTGACCTGA
* *
34318 ACCGAAACAAACTGG
1 ACCGAAACCAACCGG
* * *
34333 CCCGATACCAACCCG
1 ACCGAAACCAACCGG
34348 ACTCGAAACCAACCGG
1 AC-CGAAACCAACCGG
* * *
34364 TCCGAAACTAACCCG
1 ACCGAAACCAACCGG
34379 ACTCGAAACCAACCG
1 AC-CGAAACCAACCG
34394 ATCCGATATT
Statistics
Matches: 45, Mismatches: 14, Indels: 3
0.73 0.23 0.05
Matches are distributed among these distances:
15 23 0.51
16 22 0.49
ACGTcount: A:0.37, C:0.39, G:0.16, T:0.08
Consensus pattern (15 bp):
ACCGAAACCAACCGG
Found at i:34394 original size:15 final size:16
Alignment explanation
Indices: 34339--34392 Score: 74
Period size: 16 Copynumber: 3.4 Consensus size: 16
34329 CTGGCCCGAT
34339 ACCAACCCGACTCGAA
1 ACCAACCCGACTCGAA
* *
34355 ACCAACCGGTC-CGAA
1 ACCAACCCGACTCGAA
*
34370 ACTAACCCGACTCGAA
1 ACCAACCCGACTCGAA
34386 ACCAACC
1 ACCAACC
34393 GATCCGATAT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
15 12 0.39
16 19 0.61
ACGTcount: A:0.37, C:0.43, G:0.13, T:0.07
Consensus pattern (16 bp):
ACCAACCCGACTCGAA
Found at i:34399 original size:31 final size:31
Alignment explanation
Indices: 34342--34424 Score: 112
Period size: 31 Copynumber: 2.6 Consensus size: 31
34332 GCCCGATACC
*
34342 AACCCGACTCGAAACCAACCGGTCCGAAACT
1 AACCCGACTCGAAACCAACCGATCCGAAACT
* *
34373 AACCCGACTCGAAACCAACCGATCCGATATT
1 AACCCGACTCGAAACCAACCGATCCGAAACT
* *
34404 AATCTGACTCGAAAACCAACC
1 AACCCGACTCG-AAACCAACC
34425 AATCTGATTT
Statistics
Matches: 46, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
31 37 0.80
32 9 0.20
ACGTcount: A:0.37, C:0.36, G:0.13, T:0.13
Consensus pattern (31 bp):
AACCCGACTCGAAACCAACCGATCCGAAACT
Found at i:34956 original size:75 final size:74
Alignment explanation
Indices: 34830--34978 Score: 244
Period size: 75 Copynumber: 2.0 Consensus size: 74
34820 CTCTCTAGAG
* * *
34830 GGCCAAATGCATACCCATTATTTTGGATAAGTTATTAAATATAGTTTAATATATCAAGGGGAAAG
1 GGCCAAATGCATAACCATTATTTTGAATAAGTTATTAAATATAGTTCAATATATCAA-GGGAAAG
34895 AGAAGAAATT
65 AGAAGAAATT
* *
34905 GGCCAAGTGCATAACCATTATTTTGAATAAGTTATTAAATATAGTTCAATATATTAAGGGAAAGA
1 GGCCAAATGCATAACCATTATTTTGAATAAGTTATTAAATATAGTTCAATATATCAAGGGAAAGA
34970 GAAGAAATT
66 GAAGAAATT
34979 AAGAATTTTT
Statistics
Matches: 69, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
74 17 0.25
75 52 0.75
ACGTcount: A:0.42, C:0.09, G:0.18, T:0.31
Consensus pattern (74 bp):
GGCCAAATGCATAACCATTATTTTGAATAAGTTATTAAATATAGTTCAATATATCAAGGGAAAGA
GAAGAAATT
Found at i:38809 original size:60 final size:60
Alignment explanation
Indices: 38646--38811 Score: 233
Period size: 60 Copynumber: 2.8 Consensus size: 60
38636 AATTGATCTT
* * *** * *
38646 CGACTATAAGATATTATTTTATTAAGTTATTTAATTATTAAAAATTATAAAACGATCATC
1 CGACTATAAGAAATTACTTTATTAAGTCCCTTAACTATTAAAAGTTATAAAACGATCATC
* *
38706 CGACTATAAGAAATTACTTTATTAAGTCCCTTAACTATTAAAAGTTATAAAATGATCCTC
1 CGACTATAAGAAATTACTTTATTAAGTCCCTTAACTATTAAAAGTTATAAAACGATCATC
* *
38766 CGACTATAAGTAATTGCTTTATTAAGTCCCTTAACTATTAAAAGTT
1 CGACTATAAGAAATTACTTTATTAAGTCCCTTAACTATTAAAAGTT
38812 CACATCGACT
Statistics
Matches: 95, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
60 95 1.00
ACGTcount: A:0.40, C:0.13, G:0.08, T:0.39
Consensus pattern (60 bp):
CGACTATAAGAAATTACTTTATTAAGTCCCTTAACTATTAAAAGTTATAAAACGATCATC
Found at i:40218 original size:19 final size:19
Alignment explanation
Indices: 40194--40287 Score: 102
Period size: 20 Copynumber: 4.8 Consensus size: 19
40184 AATGACCAAT
40194 AAAATCGCAACGCGAAATA-
1 AAAATCGCAACGCGAAA-AG
**
40213 AAAATCGCAACGCGATTTAG
1 AAAATCGCAACGCGA-AAAG
*
40233 AAAATCGCAACGTTGAAAAG
1 AAAATCGCAACG-CGAAAAG
40253 AAAATCGCAACG-GTCAAAAG
1 AAAATCGCAACGCG--AAAAG
40273 AAAATCGCAACGCGA
1 AAAATCGCAACGCGA
40288 TTCAGAAAAT
Statistics
Matches: 64, Mismatches: 5, Indels: 12
0.79 0.06 0.15
Matches are distributed among these distances:
18 1 0.02
19 17 0.27
20 43 0.67
21 3 0.05
ACGTcount: A:0.48, C:0.20, G:0.19, T:0.13
Consensus pattern (19 bp):
AAAATCGCAACGCGAAAAG
Found at i:40404 original size:6 final size:6
Alignment explanation
Indices: 40393--40461 Score: 138
Period size: 6 Copynumber: 11.5 Consensus size: 6
40383 GACACGTATT
40393 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG
1 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG
40441 ACCACG ACCACG ACCACG ACC
1 ACCACG ACCACG ACCACG ACC
40462 CGAGACGGCG
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 63 1.00
ACGTcount: A:0.33, C:0.51, G:0.16, T:0.00
Consensus pattern (6 bp):
ACCACG
Found at i:40963 original size:6 final size:6
Alignment explanation
Indices: 40952--41080 Score: 258
Period size: 6 Copynumber: 21.5 Consensus size: 6
40942 TCTCGTCTCG
40952 GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT
1 GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT
41000 GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT
1 GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT
41048 GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGT
1 GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGT
41081 AATACGTGTC
Statistics
Matches: 123, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 123 1.00
ACGTcount: A:0.00, C:0.16, G:0.50, T:0.33
Consensus pattern (6 bp):
GGTCGT
Found at i:41201 original size:20 final size:20
Alignment explanation
Indices: 41176--41541 Score: 407
Period size: 20 Copynumber: 18.2 Consensus size: 20
41166 GAATTTACTC
41176 ATTTTCTTAATCGCGTTGCG
1 ATTTTCTTAATCGCGTTGCG
41196 ATTTTCTTAATCGCGTTGCG
1 ATTTTCTTAATCGCGTTGCG
41216 ATTTTCTTAATCGCGTTGCG
1 ATTTTCTTAATCGCGTTGCG
41236 A--TTCTTGGAATCGCGTTGCG
1 ATTTTCTT--AATCGCGTTGCG
41256 ATTTTCTTAATCGCGTTGCG
1 ATTTTCTTAATCGCGTTGCG
*
41276 ATTTTCTGAATCGCGTTGCG
1 ATTTTCTTAATCGCGTTGCG
41296 A--TTCTTGGAATCGCGTTGCG
1 ATTTTCTT--AATCGCGTTGCG
41316 A--TTCTTGGAATCGCGTTGCG
1 ATTTTCTT--AATCGCGTTGCG
41336 ATTTTCTTAATCGCGTTGCG
1 ATTTTCTTAATCGCGTTGCG
*
41356 ATTTTCTGAATCGCGTTGCG
1 ATTTTCTTAATCGCGTTGCG
41376 A--TTCTTGGAATCGCGTTGCG
1 ATTTTCTT--AATCGCGTTGCG
41396 ATTTTCTTAATCGCGTTGCG
1 ATTTTCTTAATCGCGTTGCG
* *
41416 ATTCTCTTAATCGCATTGCG
1 ATTTTCTTAATCGCGTTGCG
***
41436 ATTCTTGGAATATCGCGTTGCG
1 ATT-TTCTTA-ATCGCGTTGCG
*
41458 ATTTTCTT--TTGACCGTTGCG
1 ATTTTCTTAATCG--CGTTGCG
* *
41478 ATTTTCTT-TTCAACGTTGCG
1 ATTTTCTTAATC-GCGTTGCG
*
41498 ATTTTCTAAATCGCGTTGCG
1 ATTTTCTTAATCGCGTTGCG
*
41518 A-TTT-TTATTTCGCGTTGCG
1 ATTTTCTTA-ATCGCGTTGCG
41537 ATTTT
1 ATTTT
41542 GTTGGTCATT
Statistics
Matches: 303, Mismatches: 22, Indels: 42
0.83 0.06 0.11
Matches are distributed among these distances:
18 17 0.06
19 14 0.05
20 237 0.78
21 7 0.02
22 28 0.09
ACGTcount: A:0.15, C:0.20, G:0.22, T:0.43
Consensus pattern (20 bp):
ATTTTCTTAATCGCGTTGCG
Found at i:44752 original size:32 final size:31
Alignment explanation
Indices: 44713--44772 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
44703 TGTTATGAAA
44713 TAATAATTTTAACATTATAATAATATAAATTT
1 TAATAATTTTAAC-TTATAATAATATAAATTT
* * *
44745 TAATAATTTTATCTTATATTAATTTAAA
1 TAATAATTTTAACTTATAATAATATAAA
44773 AAATTTAATA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
31 13 0.52
32 12 0.48
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (31 bp):
TAATAATTTTAACTTATAATAATATAAATTT
Found at i:44785 original size:33 final size:32
Alignment explanation
Indices: 44713--44785 Score: 85
Period size: 33 Copynumber: 2.2 Consensus size: 32
44703 TGTTATGAAA
* *
44713 TAATAATTTTAACATTATAATAATATAAATTT
1 TAATAATTTTAACATTATAATAATAAAAAATT
* *
44745 TAATAATTTTATC-TTATATTAATTTAAAAAATT
1 TAATAATTTTAACATTATAATAA--TAAAAAATT
44778 TAATAATT
1 TAATAATT
44786 ATTTTGTAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
31 8 0.23
32 12 0.34
33 15 0.43
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.49
Consensus pattern (32 bp):
TAATAATTTTAACATTATAATAATAAAAAATT
Found at i:50306 original size:25 final size:25
Alignment explanation
Indices: 50277--50331 Score: 110
Period size: 25 Copynumber: 2.2 Consensus size: 25
50267 ATTTTATATT
50277 TATTTTAAATTTATATAAAAAATTA
1 TATTTTAAATTTATATAAAAAATTA
50302 TATTTTAAATTTATATAAAAAATTA
1 TATTTTAAATTTATATAAAAAATTA
50327 TATTT
1 TATTT
50332 AATGAAAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (25 bp):
TATTTTAAATTTATATAAAAAATTA
Found at i:50324 original size:13 final size:12
Alignment explanation
Indices: 50287--50329 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
50277 TATTTTAAAT
50287 TTATATAAAAAA
1 TTATATAAAAAA
** *
50299 TTATATTTTAAAT
1 TTATA-TAAAAAA
50312 TTATATAAAAAA
1 TTATATAAAAAA
50324 TTATAT
1 TTATAT
50330 TTAATGAAAA
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
12 15 0.62
13 9 0.38
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (12 bp):
TTATATAAAAAA
Found at i:59412 original size:24 final size:23
Alignment explanation
Indices: 59369--59414 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 23
59359 CCCATAAGAA
59369 TAAAAAAAAGACTATTACTCTTCT
1 TAAAAAAAAGACTA-TACTCTTCT
59393 TAAAAATAAAGACTCA-ACTCTT
1 TAAAAA-AAAGACT-ATACTCTT
59415 GTGGCTAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
24 12 0.60
25 7 0.35
26 1 0.05
ACGTcount: A:0.48, C:0.17, G:0.04, T:0.30
Consensus pattern (23 bp):
TAAAAAAAAGACTATACTCTTCT
Found at i:66280 original size:34 final size:32
Alignment explanation
Indices: 66227--66296 Score: 104
Period size: 34 Copynumber: 2.1 Consensus size: 32
66217 ACCTTACAAC
*
66227 TCCCTAGTTTTTCCGGGCTAAACTAGAACATT
1 TCCCTAGTTTTACCGGGCTAAACTAGAACATT
*
66259 TCCCTAGCTTTTACACGGGCTAAGCTAGAACATT
1 TCCCTAG-TTTTAC-CGGGCTAAACTAGAACATT
66293 TCCC
1 TCCC
66297 CTTTACAAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
32 7 0.21
33 5 0.15
34 22 0.65
ACGTcount: A:0.24, C:0.29, G:0.16, T:0.31
Consensus pattern (32 bp):
TCCCTAGTTTTACCGGGCTAAACTAGAACATT
Found at i:66607 original size:21 final size:21
Alignment explanation
Indices: 66581--66622 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
66571 CCAGAATGGG
*
66581 GGGAATCGGTACCCCTTCATA
1 GGGAATCGATACCCCTTCATA
66602 GGGAATCGATACCCCTTCATA
1 GGGAATCGATACCCCTTCATA
66623 ATATTCAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (21 bp):
GGGAATCGATACCCCTTCATA
Found at i:66751 original size:19 final size:19
Alignment explanation
Indices: 66727--66793 Score: 89
Period size: 19 Copynumber: 3.5 Consensus size: 19
66717 GAGCCTTGGG
*
66727 TTACTGTTCAAACAGTGAT
1 TTACTGTTCAAACAGTAAT
*
66746 TTACTGTTCAAATAGTAAT
1 TTACTGTTCAAACAGTAAT
* *
66765 TTACTGTTCAAATAGTAAA
1 TTACTGTTCAAACAGTAAT
*
66784 TTACTATTCA
1 TTACTGTTCA
66794 TAAAAACATT
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 44 1.00
ACGTcount: A:0.36, C:0.13, G:0.10, T:0.40
Consensus pattern (19 bp):
TTACTGTTCAAACAGTAAT
Found at i:66891 original size:29 final size:31
Alignment explanation
Indices: 66859--66918 Score: 97
Period size: 29 Copynumber: 2.0 Consensus size: 31
66849 AAATTTTGAA
*
66859 TAAATTCAATT-AAGTCCAAATA-CATTTTG
1 TAAATTCAATTCAAGTCCAAAAACCATTTTG
66888 TAAATTCAATTCAAGTCCAAAAACCATTTTG
1 TAAATTCAATTCAAGTCCAAAAACCATTTTG
66919 CCTTAAATTG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
29 11 0.39
30 10 0.36
31 7 0.25
ACGTcount: A:0.42, C:0.17, G:0.07, T:0.35
Consensus pattern (31 bp):
TAAATTCAATTCAAGTCCAAAAACCATTTTG
Found at i:69528 original size:29 final size:29
Alignment explanation
Indices: 69485--69567 Score: 130
Period size: 29 Copynumber: 2.8 Consensus size: 29
69475 CTCACCTAAC
*
69485 TAAATTGATGTAAGCAATGACATCATTACT
1 TAAA-TGATGTAAGCAATGACATCATTAAT
*
69515 TAAATGATGTAAGCAATGACATCTTTAAT
1 TAAATGATGTAAGCAATGACATCATTAAT
*
69544 TAAATGATGTAAGTAATGACATCA
1 TAAATGATGTAAGCAATGACATCA
69568 ATTTAGTTTG
Statistics
Matches: 49, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
29 45 0.92
30 4 0.08
ACGTcount: A:0.42, C:0.11, G:0.14, T:0.33
Consensus pattern (29 bp):
TAAATGATGTAAGCAATGACATCATTAAT
Found at i:74296 original size:29 final size:29
Alignment explanation
Indices: 74253--74335 Score: 130
Period size: 29 Copynumber: 2.8 Consensus size: 29
74243 CTCACCTAAC
*
74253 TAAATTGATGTAAGCAATGACATCATTACT
1 TAAA-TGATGTAAGCAATGACATCATTAAT
*
74283 TAAATGATGTAAGCAATGACATCTTTAAT
1 TAAATGATGTAAGCAATGACATCATTAAT
*
74312 TAAATGATGTAAGTAATGACATCA
1 TAAATGATGTAAGCAATGACATCA
74336 ATTTAGTTTG
Statistics
Matches: 49, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
29 45 0.92
30 4 0.08
ACGTcount: A:0.42, C:0.11, G:0.14, T:0.33
Consensus pattern (29 bp):
TAAATGATGTAAGCAATGACATCATTAAT
Found at i:77024 original size:7 final size:7
Alignment explanation
Indices: 77012--77060 Score: 80
Period size: 7 Copynumber: 6.9 Consensus size: 7
77002 GAATATCTCC
77012 AATATAT
1 AATATAT
77019 AATATAT
1 AATATAT
77026 AATATAT
1 AATATAT
*
77033 GATATAT
1 AATATAT
77040 AATATAT
1 AATATAT
77047 AATAATAT
1 AAT-ATAT
77055 AATATA
1 AATATA
77061 GAAAGAAGAT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
7 32 0.82
8 7 0.18
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (7 bp):
AATATAT
Found at i:78009 original size:208 final size:208
Alignment explanation
Indices: 77646--78036 Score: 683
Period size: 208 Copynumber: 1.9 Consensus size: 208
77636 TAATTAAGTG
* *
77646 ATTTAATTGATAAAATTAAAAGATTGATAGTCAAATTTGAATCTCTCATGTAATTAAGTGGGCAT
1 ATTTAATTGATAAAATTAAAAGATTGATAGTCAAATTTGAATCTCTAATGTAATTAAGTGAGCAT
* * *
77711 GAGTATAATTTATTTAATGTTTTTTAATATTATAGCAAGTAATAGATTTTATTTTACTAAAATAT
66 GAGTATAATTTATCTAATATTTTTTAATATTATAGCAAGTAATAGATTTTATTTTACTAAAATAA
*
77776 ATTATACTTTTCATCAAATAATATTTTAATTTAAATTAGTAATTCAATTTAATATTAATTAATTG
131 ATTATACTTTTCATCAAATAATATTTTAATTTAAATTAATAATTCAATTTAATATTAATTAATTG
77841 ATTTGATAGTCAA
196 ATTTGATAGTCAA
* * *
77854 ATTTGATTGATAAAATTAAAATATTGATAGTCAAATTTGAATCTCTAATGTAATTAAGTGATCAT
1 ATTTAATTGATAAAATTAAAAGATTGATAGTCAAATTTGAATCTCTAATGTAATTAAGTGAGCAT
* *
77919 GAGTATATTTTATCTAATATTTTTTAATATTATAGCAAGTAATGGATTTTATTTTACTAAAATAA
66 GAGTATAATTTATCTAATATTTTTTAATATTATAGCAAGTAATAGATTTTATTTTACTAAAATAA
77984 ATTATACTTTTCATCAAATAATATTTTAATTTAAATTAATAATTCAATTTAAT
131 ATTATACTTTTCATCAAATAATATTTTAATTTAAATTAATAATTCAATTTAAT
78037 TTCTTAAGAA
Statistics
Matches: 172, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
208 172 1.00
ACGTcount: A:0.40, C:0.06, G:0.09, T:0.45
Consensus pattern (208 bp):
ATTTAATTGATAAAATTAAAAGATTGATAGTCAAATTTGAATCTCTAATGTAATTAAGTGAGCAT
GAGTATAATTTATCTAATATTTTTTAATATTATAGCAAGTAATAGATTTTATTTTACTAAAATAA
ATTATACTTTTCATCAAATAATATTTTAATTTAAATTAATAATTCAATTTAATATTAATTAATTG
ATTTGATAGTCAA
Found at i:79543 original size:21 final size:21
Alignment explanation
Indices: 79499--79543 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
79489 TAGCCAGGGG
* *
79499 AATAAAATTTTAAATTACTCA
1 AATAAAATTATAAATTACTAA
* *
79520 AATATAATTATAAATTATTAA
1 AATAAAATTATAAATTACTAA
79541 AAT
1 AAT
79544 TTTATAATTA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (21 bp):
AATAAAATTATAAATTACTAA
Found at i:79589 original size:14 final size:13
Alignment explanation
Indices: 79537--79589 Score: 61
Period size: 14 Copynumber: 3.8 Consensus size: 13
79527 TTATAAATTA
*
79537 TTAAAATTTTATAA
1 TTAAAATTTTAT-T
79551 TTAAAATTTTATT
1 TTAAAATTTTATT
*
79564 TTAAATAATTTACTT
1 TTAAA-ATTTTA-TT
79579 TTAAAATTTTA
1 TTAAAATTTTA
79590 ATTAATTTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
13 5 0.15
14 22 0.65
15 7 0.21
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (13 bp):
TTAAAATTTTATT
Found at i:84405 original size:24 final size:24
Alignment explanation
Indices: 84378--84426 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
84368 TAAATATAAT
*
84378 CGTCCTCCATAAATACCGTCTAAC
1 CGTCCTCCATAAATACCGTCCAAC
84402 CGTCCTCCATAAATACCGTCCAAC
1 CGTCCTCCATAAATACCGTCCAAC
84426 C
1 C
84427 ATCCGTTCCC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.29, C:0.41, G:0.08, T:0.22
Consensus pattern (24 bp):
CGTCCTCCATAAATACCGTCCAAC
Found at i:86357 original size:21 final size:21
Alignment explanation
Indices: 86331--86410 Score: 81
Period size: 21 Copynumber: 3.8 Consensus size: 21
86321 TATTCCACAA
*
86331 CCATTTTAGATGCCACCGCAG
1 CCATTTCAGATGCCACCGCAG
* *
86352 CCATTTCAGATGGCACTGCAG
1 CCATTTCAGATGCCACCGCAG
** **
86373 TCGTTTTC-GATGCCACCAAAG
1 -CCATTTCAGATGCCACCGCAG
86394 CCATTTCAGATGCCACC
1 CCATTTCAGATGCCACC
86411 ACCACAGGGT
Statistics
Matches: 46, Mismatches: 11, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
20 5 0.11
21 36 0.78
22 5 0.11
ACGTcount: A:0.24, C:0.33, G:0.19, T:0.25
Consensus pattern (21 bp):
CCATTTCAGATGCCACCGCAG
Found at i:86885 original size:23 final size:19
Alignment explanation
Indices: 86835--86882 Score: 87
Period size: 19 Copynumber: 2.5 Consensus size: 19
86825 TTTCTTAATG
86835 TTTTTATTTAATTATAGAC
1 TTTTTATTTAATTATAGAC
*
86854 TTTTTATTTAATTATGGAC
1 TTTTTATTTAATTATAGAC
86873 TTTTTATTTA
1 TTTTTATTTA
86883 TTTTGTTTCT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.27, C:0.04, G:0.06, T:0.62
Consensus pattern (19 bp):
TTTTTATTTAATTATAGAC
Found at i:87591 original size:13 final size:13
Alignment explanation
Indices: 87573--87598 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
87563 TCTACTTAGC
87573 TTGATAGAAGGAA
1 TTGATAGAAGGAA
87586 TTGATAGAAGGAA
1 TTGATAGAAGGAA
87599 AAGTGTGAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.31, T:0.23
Consensus pattern (13 bp):
TTGATAGAAGGAA
Found at i:87955 original size:27 final size:27
Alignment explanation
Indices: 87917--87975 Score: 109
Period size: 27 Copynumber: 2.2 Consensus size: 27
87907 CCACGTTTTG
*
87917 TTAAAAATGATGTTAATTCGATAATAT
1 TTAAAAAAGATGTTAATTCGATAATAT
87944 TTAAAAAAGATGTTAATTCGATAATAT
1 TTAAAAAAGATGTTAATTCGATAATAT
87971 TTAAA
1 TTAAA
87976 GAAGGGGGCC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.47, C:0.03, G:0.10, T:0.39
Consensus pattern (27 bp):
TTAAAAAAGATGTTAATTCGATAATAT
Found at i:89222 original size:17 final size:17
Alignment explanation
Indices: 89200--89241 Score: 84
Period size: 17 Copynumber: 2.5 Consensus size: 17
89190 TTTAAGAAAT
89200 GGATGAAAGCAAATCAA
1 GGATGAAAGCAAATCAA
89217 GGATGAAAGCAAATCAA
1 GGATGAAAGCAAATCAA
89234 GGATGAAA
1 GGATGAAA
89242 AAAAAAAAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.52, C:0.10, G:0.26, T:0.12
Consensus pattern (17 bp):
GGATGAAAGCAAATCAA
Found at i:92950 original size:37 final size:36
Alignment explanation
Indices: 92875--92950 Score: 100
Period size: 36 Copynumber: 2.1 Consensus size: 36
92865 TTTTTATATT
*
92875 TTTAATTTTGTAAAAAAATTATATAAATATTATGAA
1 TTTAATTTTGTAAAAAAATTATATAAATATTATCAA
* *
92911 TTTAATTTTTTAAAGAAAA-TATATAAATATTTTACAA
1 TTTAATTTTGTAAA-AAAATTATATAAATATTAT-CAA
92948 TTT
1 TTT
92951 GTAATATTAT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
36 26 0.74
37 9 0.26
ACGTcount: A:0.47, C:0.01, G:0.04, T:0.47
Consensus pattern (36 bp):
TTTAATTTTGTAAAAAAATTATATAAATATTATCAA
Done.