genome.fa.s5910.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005910.1 Hibiscus syriacus cultivar Beakdansim tig00013880_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  129355

Tables:   1   

This is table  1  of  1  ( 76 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1365--1420	29	1.9	29	85	0	76	16	33	28	21	1.95
1491--1518	14	2.0	14	100	0	56	7	28	42	21	1.79
1469--1504	10	3.6	10	89	10	56	8	33	36	22	1.84
12486--12609	31	4.0	31	77	5	133	31	18	19	30	1.96
12486--12607	63	2.0	62	86	4	174	30	18	19	31	1.96
13350--13475	24	5.4	24	93	3	206	26	20	17	35	1.95
16027--16054	5	5.6	5	100	0	56	78	0	0	21	0.75
16617--16658	20	2.1	20	100	0	84	35	21	33	9	1.86
19883--19929	22	2.0	23	84	8	60	70	4	0	25	1.05
22156--22190	6	5.8	6	100	0	70	51	17	17	14	1.77
41413--41456	22	2.0	22	82	13	54	52	2	0	45	1.13
41742--41789	23	2.1	23	84	0	60	35	10	18	35	1.85
42213--42275	23	2.7	23	92	0	99	38	20	4	36	1.74
42646--42708	23	2.7	23	92	0	99	38	20	4	36	1.74
41856--42918	433	2.5	431	97	1	2001	38	12	7	41	1.71
43125--43210	39	2.2	39	93	0	145	18	13	18	48	1.80
43467--43503	18	2.1	18	89	0	56	51	10	5	32	1.60
46320--47494	183	6.4	183	98	0	2172	33	16	14	36	1.89
47501--47545	22	2.0	22	86	0	63	37	11	8	42	1.72
48960--49025	3	22.0	3	73	0	51	22	34	7	34	1.83
48964--49029	12	5.2	12	77	10	69	21	34	9	34	1.85
48979--49037	24	2.5	24	85	0	82	18	35	10	35	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48961--49037	36	2.1	36	90	0	118	20	35	9	35	1.85
48983--49037	12	4.6	12	88	0	74	18	36	10	34	1.86
48979--49040	18	3.4	18	79	0	79	17	35	9	37	1.83
48979--49040	6	10.3	6	75	0	52	17	35	9	37	1.83
50488--51770	197	6.5	196	97	1	2276	32	16	14	36	1.89
50501--51770	390	3.2	390	96	1	2287	32	16	14	36	1.90
51895--51943	19	2.6	19	90	6	73	55	10	4	30	1.52
53720--53784	33	2.0	33	90	3	105	23	47	0	29	1.52
53818--53882	21	3.1	21	80	6	69	15	29	15	40	1.88
56101--56143	20	2.3	18	85	14	61	20	16	11	51	1.75
56274--56319	20	2.3	20	89	10	76	17	17	10	54	1.70
57091--57162	30	2.4	29	86	2	90	56	0	6	36	1.26
57420--57472	21	2.5	21	79	11	63	22	24	18	33	1.97
57462--57514	20	2.7	20	84	0	70	35	20	20	22	1.96
58370--58423	24	2.2	24	93	0	90	20	18	20	40	1.91
59454--59617	20	8.1	20	79	5	186	20	18	23	37	1.94
59454--59617	41	4.0	41	92	0	260	20	18	23	37	1.94
59626--59678	20	2.7	20	78	0	61	16	15	20	47	1.83
59728--59781	20	2.7	19	75	8	63	16	18	31	33	1.93
70018--70098	6	13.5	6	97	0	144	2	16	48	33	1.59
70365--70417	22	2.4	22	78	12	63	30	7	20	41	1.80
72572--72649	26	3.0	26	78	12	81	55	1	1	42	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73980--74015	19	1.9	19	88	5	56	52	5	0	41	1.24
74587--74645	29	2.0	30	86	3	84	50	18	8	22	1.73
78140--78298	80	2.0	80	82	2	194	37	10	11	40	1.76
79939--79983	23	2.0	23	81	0	54	53	13	15	17	1.73
81237--81282	12	4.0	12	77	11	60	41	21	17	19	1.90
81237--81280	22	2.0	22	90	0	70	43	18	18	20	1.89
86008--86045	18	2.1	18	100	0	76	42	34	0	23	1.55
97923--98035	57	2.0	58	92	5	194	65	13	6	15	1.45
99486--99533	19	2.5	20	89	3	71	22	6	22	47	1.73
99555--99612	29	2.0	29	82	0	71	44	13	18	22	1.85
101192--101245	16	3.1	16	82	15	63	12	3	1	81	0.91
102140--102191	17	3.1	17	88	2	70	80	9	1	7	0.97
102378--102403	2	13.0	2	100	0	52	50	0	0	50	1.00
103735--104471	369	2.0	369	99	0	1465	39	17	16	27	1.91
105121--105146	2	13.0	2	100	0	52	50	0	0	50	1.00
106628--106915	140	2.0	140	82	6	348	39	7	7	44	1.63
112108--112137	14	2.1	15	93	6	53	80	0	20	0	0.72
116360--116392	16	2.1	16	100	0	66	57	24	12	6	1.57
116457--116531	10	7.7	10	69	21	61	57	21	12	9	1.62
116461--116525	16	4.1	16	95	0	121	56	23	12	7	1.61
117277--117332	14	4.3	14	82	17	75	51	25	14	8	1.70
117257--117331	24	3.1	24	90	3	107	54	21	12	12	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
117270--117317	10	4.4	10	78	19	51	54	22	12	10	1.68
118198--118252	22	2.5	22	90	0	92	34	12	14	38	1.84
118992--119604	76	8.4	76	88	8	950	22	21	20	35	1.96
118927--119560	141	4.4	141	95	3	1101	22	21	20	35	1.96
119273--119604	151	2.2	152	96	0	603	22	20	21	35	1.96
119763--119805	3	14.3	3	85	0	59	37	0	0	62	0.95
125764--125819	15	3.7	14	74	23	51	37	17	0	44	1.49
127917--127970	27	1.9	29	88	7	85	18	20	11	50	1.77
127923--127987	26	2.4	27	82	10	71	18	18	9	53	1.70
127988--128090	40	2.5	41	79	4	118	30	10	4	54	1.56

Tables:   1

The End!