Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005911.1 Hibiscus syriacus cultivar Beakdansim tig00013881_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  123103

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8222--8264
10
4.2
10
81
3
50
69
2
2
25
1.12
17948--17979
2
17.0
2
87
12
50
46
0
0
53
1.00
19647--19677
4
7.8
4
100
0
62
51
22
0
25
1.48
21129--21161
13
2.5
13
95
5
57
6
0
9
84
0.76
21176--21234
20
2.8
20
77
7
64
15
16
18
49
1.80
23635--23685
17
3.1
17
85
2
77
47
0
9
43
1.36
23885--23924
7
5.4
8
80
17
50
57
0
7
35
1.27
23885--23924
15
2.7
15
88
7
55
57
0
7
35
1.27
23523--24131
2
313.5
2
66
18
155
43
3
9
42
1.55
25816--25879
18
3.4
18
91
4
92
62
3
1
32
1.20
27482--27524
20
2.2
20
100
0
86
41
13
16
27
1.86
29512--29538
13
2.1
13
100
0
54
7
22
14
55
1.64
29846--29953
42
2.6
42
86
4
148
33
20
20
25
1.97
29935--30312
90
4.2
90
89
1
553
34
19
17
28
1.95
30321--30420
42
2.4
42
89
3
148
34
20
21
25
1.97
30321--30444
42
3.0
42
85
2
142
33
21
20
25
1.97
30485--30818
43
7.8
43
91
0
524
27
30
14
27
1.95
32375--32569
52
3.8
51
84
4
232
23
23
16
37
1.93
33711--33805
17
5.8
16
76
16
70
8
14
1
75
1.08
33728--33804
17
4.6
16
79
12
84
3
15
1
79
0.95
33715--33786
23
2.9
24
79
8
83
8
12
1
77
1.04
33712--33813
50
2.0
50
88
7
154
6
15
0
76
1.05
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33730--33813
17
4.9
17
82
10
75
4
16
1
77
1.00
40030--40074
16
2.8
16
96
0
81
55
0
0
44
0.99
43701--43786
32
2.7
32
77
16
97
29
19
15
36
1.92
47712--47890
34
5.4
33
66
18
95
46
5
6
41
1.50
52634--52861
96
2.4
96
100
0
456
25
19
31
23
1.98
52861--52891
2
15.5
2
100
0
62
51
0
0
48
1.00
52988--53064
30
2.6
29
93
2
127
19
20
41
18
1.90
53205--53306
50
2.0
50
98
0
195
26
1
14
56
1.49
54005--54032
2
14.0
2
100
0
56
50
0
0
50
1.00
54152--54221
24
2.8
24
76
23
74
35
0
0
64
0.94
54183--54215
16
2.0
17
88
5
50
39
0
0
60
0.97
61918--61967
24
2.0
24
84
3
64
46
0
2
52
1.12
64896--64938
3
14.3
3
100
0
86
65
0
0
34
0.93
66541--66671
29
4.7
29
88
5
198
32
6
25
36
1.80
66540--66671
56
2.4
57
91
5
207
32
6
25
36
1.80
73983--74039
29
2.0
29
85
0
78
29
7
22
40
1.80
73984--74058
29
2.6
29
77
6
73
30
6
21
41
1.79
75013--75064
23
2.3
23
93
0
95
32
32
25
9
1.88
77929--77974
24
1.9
24
81
0
56
69
0
4
26
1.07
95181--95325
10
13.8
10
67
23
50
73
0
19
7
1.07
95176--95243
32
2.1
32
84
10
86
75
0
16
8
1.05
95202--95316
25
4.7
23
72
18
90
73
0
19
7
1.08
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
95153--95221
7
10.3
7
75
20
51
73
0
14
11
1.09
96263--96287
8
3.1
8
100
0
50
40
12
12
36
1.79
96612--96687
37
2.1
37
92
5
127
36
18
21
23
1.95
96698--97012
55
5.7
55
84
4
352
25
17
26
30
1.97
96698--96998
165
1.8
165
84
7
414
25
16
25
32
1.96
100282--100312
15
2.1
15
100
0
62
38
12
0
48
1.42
100455--100537
41
2.0
41
86
4
114
45
15
7
31
1.73
107712--107742
4
7.8
4
92
0
53
0
45
0
54
0.99
122662--122690
7
4.3
7
95
4
51
44
0
10
44
1.38
122662--122694
13
2.5
13
86
13
50
45
0
9
45
1.35

Tables:   1

The End!