Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005913.1 Hibiscus syriacus cultivar Beakdansim tig00013885_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67475

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4960--5008
26
1.9
26
95
4
91
55
6
2
36
1.37
10672--11024
117
2.9
120
90
5
552
37
4
7
49
1.53
11002--11030
13
2.1
14
93
6
51
48
0
3
48
1.18
10672--11088
117
3.5
118
86
7
513
36
4
7
51
1.51
11716--11791
2
38.0
2
100
0
152
50
0
0
50
1.00
15311--15343
2
17.0
2
93
6
59
51
0
0
48
1.00
16162--16225
32
2.0
32
84
3
85
46
3
4
45
1.39
23152--23216
30
2.2
30
84
13
82
61
3
4
30
1.31
25878--25914
17
2.2
17
90
4
58
16
35
21
27
1.94
26101--26175
22
3.0
25
72
20
68
66
0
4
29
1.09
35556--35615
26
2.2
27
88
5
86
63
1
0
35
1.05
35592--35634
18
2.6
16
82
10
52
67
2
0
30
1.03
35592--35640
16
2.8
18
81
9
57
63
4
0
32
1.13
36730--36764
18
1.9
18
88
0
52
51
0
2
45
1.16
36814--36881
29
2.3
29
87
5
93
60
1
1
36
1.15
39031--39079
22
2.2
22
88
0
71
51
0
2
46
1.12
39333--39386
27
2.0
27
85
7
74
57
0
0
42
0.98
39510--39549
20
2.0
20
85
0
53
35
17
7
40
1.78
39523--39582
15
4.1
15
82
4
86
30
18
8
43
1.79
41568--41664
30
3.2
30
78
12
92
54
3
0
42
1.16
44119--44675
137
4.0
138
93
3
944
28
12
22
36
1.91
44120--44671
275
2.0
275
93
3
941
28
12
22
36
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44696--45069
190
2.0
189
90
4
592
34
14
21
29
1.93
59885--59909
12
2.1
12
100
0
50
40
8
8
44
1.63
59795--59977
38
4.9
38
75
16
147
43
5
7
43
1.56
62375--62419
19
2.4
19
92
3
74
11
13
8
66
1.44
65735--66586
85
10.4
81
81
6
781
29
25
21
23
1.99
65865--66613
246
3.0
250
82
6
721
30
25
20
24
1.99
67134--67275
34
4.1
34
78
12
148
42
4
8
43
1.56
67310--67394
35
2.4
35
82
5
100
45
0
5
48
1.26

Tables:   1

The End!