genome.fa.s5914.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005914.1 Hibiscus syriacus cultivar Beakdansim tig00013888_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  103218

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
828--891	34	1.9	33	83	3	83	28	23	4	43	1.73
1770--1871	53	1.9	52	88	5	152	39	7	19	33	1.81
5768--5916	67	2.2	67	85	2	192	26	18	15	38	1.91
16383--16409	3	9.0	3	100	0	54	66	0	0	33	0.92
26036--26065	3	10.0	3	100	0	60	33	0	0	66	0.92
31176--31250	29	2.6	29	84	0	96	18	40	26	14	1.90
31177--31264	29	3.0	29	84	0	95	20	37	30	11	1.88
32896--32976	38	2.2	37	91	4	128	12	11	40	35	1.78
32651--33374	203	3.4	202	79	12	775	24	12	26	36	1.90
33345--33427	38	2.2	38	91	6	134	13	10	36	39	1.79
39104--39138	18	2.0	18	94	5	63	60	0	0	40	0.97
39320--39367	18	2.8	18	81	6	55	37	0	6	56	1.25
40588--40620	2	17.0	2	93	6	59	48	0	0	51	1.00
41950--41977	5	5.6	5	100	0	56	17	0	0	82	0.68
43289--43327	8	5.0	8	84	6	53	10	17	12	58	1.61
44510--44549	9	4.3	9	83	3	53	85	5	10	0	0.75
45154--45197	22	2.0	22	91	8	72	38	22	11	27	1.88
46071--46148	36	2.2	36	85	0	102	29	23	15	32	1.95
46490--46748	64	4.0	65	92	2	441	33	26	18	21	1.97
46490--46745	129	2.0	130	95	0	460	33	26	19	20	1.96
46691--46893	106	1.9	106	89	0	316	30	25	20	23	1.98
47396--47443	18	2.8	18	81	6	55	37	0	6	56	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48663--48701	2	20.0	2	94	5	71	48	0	0	51	1.00
50374--50411	16	2.5	15	84	12	51	65	0	2	31	1.06
50584--50621	15	2.6	15	83	4	51	65	0	5	28	1.14
50340--50764	210	2.0	211	93	0	726	34	5	27	32	1.81
50760--50798	18	2.2	19	86	9	55	41	5	17	35	1.72
50786--50845	20	3.0	20	75	2	59	40	11	18	30	1.86
50777--50868	40	2.3	40	77	7	98	38	10	17	33	1.85
50889--50949	20	3.0	20	74	13	54	29	11	22	36	1.90
50889--50936	20	2.4	21	79	10	55	33	12	22	31	1.91
55560--55602	22	2.0	22	100	0	86	34	13	4	46	1.65
55826--55862	20	1.9	19	89	10	58	48	10	21	18	1.78
56010--56079	37	1.9	36	85	8	97	48	4	0	47	1.21
59169--59234	23	2.9	23	72	17	64	22	16	12	48	1.79
65555--65603	21	2.3	21	100	0	98	42	6	22	28	1.77
67284--67440	78	2.0	78	93	2	271	20	12	19	47	1.81
69252--69311	30	2.0	30	96	0	111	51	11	20	16	1.75
73269--73473	92	2.2	91	81	6	227	34	24	16	24	1.95
74718--74826	55	2.0	53	91	3	173	32	6	22	38	1.80
74830--74897	33	2.1	33	94	0	118	36	8	26	27	1.86
88672--88701	15	2.0	15	93	0	51	16	20	33	30	1.94
93699--93774	31	2.5	31	88	0	116	25	7	17	50	1.72
93896--93978	27	3.2	26	77	16	75	50	1	3	44	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93893--93978	24	3.3	24	77	11	73	50	1	3	45	1.26
100283--100326	12	3.8	12	90	3	63	11	9	47	31	1.71
100281--100326	24	2.0	24	91	4	76	10	10	47	30	1.73
100815--100840	5	5.2	5	100	0	52	0	19	61	19	1.35

Tables:   1

The End!